Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Reverse (-)

33748416 .. 33751372

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1264600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGAGTGAAAAGGCAGAAGCGTCACCGGAAGAGTGTGAGGTTCTACACAGCATGCTACGGCTTCAGACAGCCCTACAAGGTGCTGTGCGATGTTACTTTCGTGCATCACCTTGTCACCAATCGCATTACCCCCGCTGACAAGGCCATCTCTAATGTCCTCGGTGCCCCTGTCCTGCTCTTCACCACCAATTGCGCCATTGCCGAGTTGAAACAACATGGTCCAATGCTTGGTCCTTCGTATTCACAGTCTCTTGAAGCTGCTAATAGCCTTATTACTGCAAGGTGTGATCACGAGAGTCACGTGAGTGCTGAAGATTGTATATTGGATGTTGTTGGGCAAAGTAATTCCGAGCACTTCTTTGTTGCTACTCAGCACGTTGATCTTCGTCGGAAACTTCTCAAGATACCAGGTGTCCCTGCTATTTATGCTCTGAGGACTGCTCTTTTGCTTGAGTCCCCTTCTGATGCCCAACACCAATTTGTCAAAGCTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGCTGTTGAAGAAGAAAAAGAATATTCCGAATTCTCTTAAAATAAACGATCCTCCTGGTGAAGAAGATGGTTCTGGAGATCAGAACATGGAAGCGCAGGCTGTAGCAAAAAGGGATAGTGCTAGGATAGGATTGGGCGTGAAGGATAAAGTTCAATTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCGTGTAAAAAGAAAAAGACGAAAAAGCCAGATCTTCATTCTGCACAGGAAAGGAAGGATGGAGATGCTACTTTGAGGAGTCGTAAGAAACGGAGTAGGTCACGGAAAGGCAAAAAGACTCAGGAGGCAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

287

Amino Acids

32.11

Weight (kDa)

9.91

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	53 - 152	4.3e-24	Fcf1
UTP23_sensor	PF24779	230 - 247	3.7e-09	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	3 cut(s)	49, 333, 516
AcvI	CACGTG	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	4 cut(s)	211, 257, 541, 686
AjnI	CCWGG	2 cut(s)	409, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	706, 738
AleI	CACNNNNGTG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	260, 491, 535
AluI	AGCT	3 cut(s)	260, 491, 535
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AspLEI	GCGC	2 cut(s)	197, 628
AspS9I	GGNCC	3 cut(s)	221, 233, 710
AsuHPI	GGTGA	5 cut(s)	17, 101, 109, 175, 602
AvaII	GGWCC	3 cut(s)	221, 233, 710
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	4 cut(s)	155, 593, 776, 848
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	411, 588
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	633
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	411, 588
Bme18I	GGWCC	3 cut(s)	221, 233, 710
BmgT120I	GGNCC	3 cut(s)	221, 233, 710
BmiI	GGNNCC	2 cut(s)	166, 711
BmrFI	CCNGG	2 cut(s)	411, 588
BmsI	GCATC	3 cut(s)	115, 457, 778
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	386, 473
BsaAI	YACGTR	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	411, 588
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	334, 787
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	386, 425, 857
BseRI	GAGGAG	1 cut(s)	814
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	750
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	401, 442
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	401, 442
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	169, 357
Bsp143I	GATC	5 cut(s)	289, 382, 580, 610, 754
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	385, 426, 856
BspLI	GGNNCC	2 cut(s)	166, 711
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	5 cut(s)	289, 382, 580, 610, 754
BssSI	CACGAG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	411, 588
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	2 cut(s)	26, 185
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	55, 509, 630
BstDEI	CTNAG	3 cut(s)	372, 434, 843
BstF5I	GGATG	2 cut(s)	334, 787
BstHHI	GCGC	2 cut(s)	197, 628
BstKTI	GATC	5 cut(s)	292, 385, 583, 613, 757
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	5 cut(s)	289, 382, 580, 610, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 428
BstNI	CCWGG	2 cut(s)	411, 588
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	409, 586
BstSFI	CTRYAG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	334, 787
Cac8I	GCNNGC	3 cut(s)	55, 509, 630
CfoI	GCGC	2 cut(s)	197, 628
Cfr13I	GGNCC	3 cut(s)	221, 233, 710
CseI	GACGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	409
CviAII	CATG	3 cut(s)	54, 218, 619
CviJI	RGCY	9 cut(s)	63, 73, 146, 260, 270, 491, 535, 632, 751
CviKI_1	RGCY	9 cut(s)	63, 73, 146, 260, 270, 491, 535, 632, 751
DdeI	CTNAG	3 cut(s)	372, 434, 843
DpnI	GATC	5 cut(s)	291, 384, 582, 612, 756
DpnII	GATC	5 cut(s)	289, 382, 580, 610, 754
Eam1104I	CTCTTC	2 cut(s)	26, 185
EarI	CTCTTC	2 cut(s)	26, 185
Eco47I	GGWCC	3 cut(s)	221, 233, 710
Eco57I	CTGAAG	3 cut(s)	49, 333, 516
Eco72I	CACGTG	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	562
EcoRII	CCWGG	2 cut(s)	409, 586
FaeI	CATG	3 cut(s)	57, 221, 622
FaiI	YATR	8 cut(s)	55, 219, 323, 429, 513, 515, 531, 620
FaqI	GGGAC	2 cut(s)	401, 442
FatI	CATG	3 cut(s)	53, 217, 618
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	341, 794
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	2 cut(s)	196, 627
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	2 cut(s)	197, 628
Hin1II	CATG	3 cut(s)	57, 221, 622
Hin6I	GCGC	2 cut(s)	195, 626
HinP1I	GCGC	2 cut(s)	195, 626
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	4 cut(s)	298, 455, 802, 841
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	5 cut(s)	17, 101, 109, 175, 602
Hpy188I	TCNGA	8 cut(s)	68, 352, 393, 435, 466, 496, 561, 615
Hpy188III	TCNNGA	5 cut(s)	254, 293, 403, 606, 845
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	4 cut(s)	246, 471, 667, 772
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	2 cut(s)	303, 378
HpyCH4V	TGCA	4 cut(s)	106, 281, 511, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 428
HpyF3I	CTNAG	3 cut(s)	372, 434, 843
HpySE526I	ACGT	2 cut(s)	303, 378
Hsp92II	CATG	3 cut(s)	57, 221, 622
HspAI	GCGC	2 cut(s)	195, 626
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 382, 580, 610, 754
LguI	GCTCTTC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	3 cut(s)	115, 457, 778
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	303, 378
MaeIII	GTNAC	5 cut(s)	23, 94, 115, 299, 822
MalI	GATC	5 cut(s)	291, 384, 582, 612, 756
MboI	GATC	5 cut(s)	289, 382, 580, 610, 754
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	2 cut(s)	169, 357
MluCI	AATT	5 cut(s)	190, 346, 479, 562, 686
MlyI	GAGTC	4 cut(s)	307, 464, 811, 835
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	7 cut(s)	33, 170, 429, 594, 693, 792, 841
MseI	TTAA	3 cut(s)	570, 690, 859
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	411, 588
MunI	CAATTG	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	411, 588
MwoI	GCNNNNNNNGC	2 cut(s)	143, 428
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	289, 382, 580, 610, 754
NlaIII	CATG	3 cut(s)	57, 221, 622
NlaIV	GGNNCC	2 cut(s)	166, 711
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	4 cut(s)	23, 115, 299, 822
NspI	RCATGY	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	4 cut(s)	306, 463, 810, 835
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
PpsI	GAGTC	4 cut(s)	306, 463, 810, 835
Ppu21I	YACGTR	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	409, 586
PspCI	CACGTG	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	409, 586
PspN4I	GGNNCC	2 cut(s)	166, 711
PspPI	GGNCC	3 cut(s)	221, 233, 710
PsuI	RGATCY	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	570, 690, 859
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	5 cut(s)	289, 382, 580, 610, 754
Sau96I	GGNCC	3 cut(s)	221, 233, 710
SchI	GAGTC	4 cut(s)	307, 464, 811, 835
ScrFI	CCNGG	2 cut(s)	411, 588
SduI	GDGCHC	2 cut(s)	169, 357
SexAI	ACCWGGT	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	115, 457, 778
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	3 cut(s)	221, 233, 710
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	401, 452
SmoI	CTYRAG	2 cut(s)	401, 452
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	5 cut(s)	190, 346, 479, 562, 686
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	2 cut(s)	409, 586
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	2 cut(s)	306, 381
TasI	AATT	5 cut(s)	190, 346, 479, 562, 686
Tru1I	TTAA	3 cut(s)	570, 690, 859
Tru9I	TTAA	3 cut(s)	570, 690, 859
TseFI	GTSAC	4 cut(s)	23, 115, 299, 822
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	4 cut(s)	23, 115, 299, 822
TspDTI	ATGAA	1 cut(s)	749
TspGWI	ACGGA	2 cut(s)	829, 841
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	221, 233, 710
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.