RLG00000013950

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003163
Physical Location & Seq
Forward (+)
44676448 .. 44677978
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013950

Sequence Viewer

Length: 597 bp
ATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTCTGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCGCACAACTAGGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

9.31

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 6 - 58 4.9e-10 Fcf1
UTP23_sensor PF24779 143 - 160 1.8e-06 UTP23 sensor motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 17, 534, 583
AgsI TTSAA 4 cut(s) 44, 392, 487, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 47, 230
AspLEI GCGC 3 cut(s) 223, 240, 402
AspS9I GGNCC 3 cut(s) 8, 20, 449
AvaII GGWCC 3 cut(s) 8, 20, 449
BanI GGYRCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 34, 217
BccI CCATC 2 cut(s) 232, 584
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 2 cut(s) 224, 241
BisI GCNGC 2 cut(s) 48, 231
BlsI GCNGC 2 cut(s) 49, 232
Bme18I GGWCC 3 cut(s) 8, 20, 449
BmgT120I GGNCC 3 cut(s) 8, 20, 449
BmiI GGNNCC 3 cut(s) 22, 222, 450
BmsI GCATC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpuEI CTTGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 534, 583
Bse1I ACTGG 2 cut(s) 241, 528
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 17, 534, 583
BseMII CTCAG 2 cut(s) 173, 188
BseNI ACTGG 2 cut(s) 241, 528
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 34, 217
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 2 cut(s) 6, 164
BslI CCNNNNNNNGG 3 cut(s) 17, 534, 583
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 6, 164
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 76, 169, 364, 557
BspACI CCGC 1 cut(s) 550
BspCNI CTCAG 2 cut(s) 172, 189
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 22, 222, 450
BspT107I GGYRCC 1 cut(s) 220
BsrI ACTGG 2 cut(s) 241, 528
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 76, 169, 364, 557
BssNAI GTATAC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 221
Bst1107I GTATAC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 548
BstACI GRCGYC 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 165, 272, 384
BstDEI CTNAG 2 cut(s) 159, 197
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 2 cut(s) 224, 241
BstHHI GCGC 3 cut(s) 223, 240, 402
BstKTI GATC 4 cut(s) 79, 172, 367, 560
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 76, 169, 364, 557
BstMWI GCNNNNNNNGC 3 cut(s) 95, 220, 227
BstV1I GCAGC 2 cut(s) 34, 217
BstZ17I GTATAC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 165, 272, 384
CciI TCATGA 1 cut(s) 79
CfoI GCGC 3 cut(s) 223, 240, 402
Cfr13I GGNCC 3 cut(s) 8, 20, 449
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 4 cut(s) 80, 91, 112, 465
CviJI RGCY 7 cut(s) 15, 47, 57, 89, 167, 386, 472
CviKI_1 RGCY 7 cut(s) 15, 47, 57, 89, 167, 386, 472
DdeI CTNAG 2 cut(s) 159, 197
DinI GGCGCC 1 cut(s) 222
DpnI GATC 4 cut(s) 78, 171, 366, 559
DpnII GATC 4 cut(s) 76, 169, 364, 557
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco47I GGWCC 3 cut(s) 8, 20, 449
Eco57I CTGAAG 1 cut(s) 279
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
FaeI CATG 4 cut(s) 83, 94, 115, 468
FaiI YATR 9 cut(s) 81, 92, 113, 190, 276, 278, 294, 466, 533
FaqI GGGAC 2 cut(s) 6, 164
FatI CATG 4 cut(s) 79, 90, 111, 464
FauNDI CATATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 48, 231
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 48, 231
FspBI CTAG 1 cut(s) 408
GlaI GCGC 3 cut(s) 222, 239, 401
GluI GCNGC 2 cut(s) 48, 231
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 2 cut(s) 224, 241
HhaI GCGC 3 cut(s) 223, 240, 402
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 4 cut(s) 83, 94, 115, 468
Hin6I GCGC 3 cut(s) 221, 238, 400
HinP1I GCGC 3 cut(s) 221, 238, 400
HinfI GANTC 4 cut(s) 35, 319, 335, 497
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 7 cut(s) 12, 34, 139, 198, 259, 343, 369
Hpy188III TCNNGA 2 cut(s) 41, 80
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 499, 577
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 4, 68, 108, 274, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 220, 227
HpyF3I CTNAG 2 cut(s) 159, 197
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 4 cut(s) 83, 94, 115, 468
HspAI GCGC 3 cut(s) 221, 238, 400
KasI GGCGCC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 169, 364, 557
LpnPI CCDG 8 cut(s) 149, 195, 248, 254, 368, 507, 541, 591
Lsp1109I GCAGC 2 cut(s) 34, 217
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 408
MalI GATC 4 cut(s) 78, 171, 366, 559
MboI GATC 4 cut(s) 76, 169, 364, 557
MboII GAAGA 4 cut(s) 272, 359, 533, 565
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 133
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 282, 306
MnlI CCTC 9 cut(s) 26, 34, 68, 76, 211, 303, 349, 432, 528
MseI TTAA 2 cut(s) 429, 595
MwoI GCNNNNNNNGC 3 cut(s) 95, 220, 227
NarI GGCGCC 1 cut(s) 221
NdeI CATATG 1 cut(s) 276
NdeII GATC 4 cut(s) 76, 169, 364, 557
NlaIII CATG 4 cut(s) 83, 94, 115, 468
NlaIV GGNNCC 3 cut(s) 22, 222, 450
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 3 cut(s) 319, 335, 497
PkrI GCNGC 2 cut(s) 49, 232
PleI GAGTC 1 cut(s) 43
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 22, 222, 450
PspPI GGNCC 3 cut(s) 8, 20, 449
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 429, 595
SatI GCNGC 2 cut(s) 48, 231
Sau3AI GATC 4 cut(s) 76, 169, 364, 557
Sau96I GGNCC 3 cut(s) 8, 20, 449
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 144
SetI ASST 2 cut(s) 49, 74
SfaNI GCATC 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 222
SinI GGWCC 3 cut(s) 8, 20, 449
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 550
SspDI GGCGCC 1 cut(s) 220
SspMI CTAG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 8
TaqII GACCGA 1 cut(s) 8
TasI AATT 1 cut(s) 133
TfiI GAWTC 3 cut(s) 319, 335, 497
Tru1I TTAA 2 cut(s) 429, 595
Tru9I TTAA 2 cut(s) 429, 595
TseI GCWGC 2 cut(s) 47, 230
TspDTI ATGAA 3 cut(s) 360, 453, 534
TspGWI ACGGA 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 8, 20, 449
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.