Rroxscaffold_7G00200230

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003163
Physical Location & Seq
Forward (+)
47573541 .. 47575833
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200230.1

Sequence Viewer

Length: 852 bp
ATGAGAGTGAAGAAGCAGAAGCGTCATAGGAAGATTGTGCGGTTCTACACAGCATGTTATGGGTTCAGACAGCCGTATAAGGTTCTCTGTGATGTCACTTTTGTGCACCACCTTGTCACCCATCGCATCACTCCTGCTGACAAGGCCCTTTCTCATATCCTTGGTGCCCCCGTCACGATATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGACAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAACGCCAGTTCGTCAAAACTTCTGAAGAACAACGTTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATATGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGCTGTGGAGATCAGAACTTGGAAGTGCAGGCTCTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGTAGGGTCCAAACCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

283

Amino Acids

32.21

Weight (kDa)

9.86

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 53 - 152 2.7e-24 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 457
AccI GTMKAC 1 cut(s) 426
AciI CCGC 2 cut(s) 40, 805
AclI AACGTT 1 cut(s) 505
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 230, 789, 838
AgsI TTSAA 5 cut(s) 211, 257, 629, 742, 756
AjnI CCWGG 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw21I GWGCWC 2 cut(s) 108, 357
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 104
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 260, 467
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AspLEI GCGC 2 cut(s) 460, 639
AspS9I GGNCC 4 cut(s) 145, 221, 233, 705
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 388
AvaII GGWCC 3 cut(s) 221, 233, 705
BaeGI GKGCMC 2 cut(s) 108, 169
BanI GGYRCC 2 cut(s) 164, 457
Bbv12I GWGCWC 2 cut(s) 108, 357
BbvI GCAGC 2 cut(s) 247, 454
BccI CCATC 3 cut(s) 129, 469, 839
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 645
BfoI RGCGCY 1 cut(s) 461
BisI GCNGC 2 cut(s) 261, 468
BlsI GCNGC 2 cut(s) 262, 469
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 3 cut(s) 221, 233, 705
BmgT120I GGNCC 4 cut(s) 145, 221, 233, 705
BmiI GGNNCC 4 cut(s) 166, 235, 459, 706
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 3 cut(s) 135, 204, 330
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu14I TTCGAA 1 cut(s) 388
BpuEI CTTGAG 2 cut(s) 386, 473
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 2 cut(s) 160, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 789, 838
Bse1I ACTGG 2 cut(s) 478, 783
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 160, 229
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 230, 789, 838
BseMII CTCAG 3 cut(s) 195, 386, 425
BseNI ACTGG 2 cut(s) 478, 783
BseRI GAGGAG 1 cut(s) 805
BseSI GKGCMC 2 cut(s) 108, 169
BseXI GCAGC 2 cut(s) 247, 454
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 2 cut(s) 164, 457
BsiHKAI GWGCWC 2 cut(s) 108, 357
BslFI GGGAC 2 cut(s) 219, 401
BslI CCNNNNNNNGG 3 cut(s) 230, 789, 838
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 2 cut(s) 219, 401
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 108, 169, 357
Bsp143I GATC 4 cut(s) 289, 382, 601, 812
BspACI CCGC 2 cut(s) 40, 805
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 196, 385, 426
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 4 cut(s) 166, 235, 459, 706
BspT104I TTCGAA 1 cut(s) 388
BspT107I GGYRCC 2 cut(s) 164, 457
BsrI ACTGG 2 cut(s) 478, 783
BssECI CCNNGG 2 cut(s) 160, 229
BssMI GATC 4 cut(s) 289, 382, 601, 812
BssNAI GTATAC 1 cut(s) 427
BssNI GRCGYC 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 378, 621
BstDEI CTNAG 3 cut(s) 204, 372, 434
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 2 cut(s) 460, 639
BstKTI GATC 4 cut(s) 292, 385, 604, 815
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 4 cut(s) 289, 382, 601, 812
BstMWI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 409
BstSLI GKGCMC 2 cut(s) 108, 169
BstV1I GCAGC 2 cut(s) 247, 454
BstZ17I GTATAC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 378, 621
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 460, 639
Cfr13I GGNCC 4 cut(s) 145, 221, 233, 705
CpoI CGGWCCG 1 cut(s) 221
CseI GACGC 1 cut(s) 11
CspI CGGWCCG 1 cut(s) 221
CviAII CATG 5 cut(s) 54, 293, 304, 325, 720
DdeI CTNAG 3 cut(s) 204, 372, 434
DinI GGCGCC 1 cut(s) 459
DpnI GATC 4 cut(s) 291, 384, 603, 814
DpnII GATC 4 cut(s) 289, 382, 601, 812
Eam1104I CTCTTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 803
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 3 cut(s) 221, 233, 705
Eco57I CTGAAG 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 5 cut(s) 57, 296, 307, 328, 723
FaqI GGGAC 2 cut(s) 219, 401
FatI CATG 5 cut(s) 53, 292, 303, 324, 719
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 261, 468
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 261, 468
FspBI CTAG 1 cut(s) 645
GlaI GCGC 2 cut(s) 459, 638
GluI GCNGC 2 cut(s) 261, 468
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 146
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 460, 639
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 5 cut(s) 57, 296, 307, 328, 723
Hin6I GCGC 2 cut(s) 458, 637
HinP1I GCGC 2 cut(s) 458, 637
HinfI GANTC 4 cut(s) 248, 406, 572, 752
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 106, 427
Hpy188I TCNGA 8 cut(s) 68, 225, 247, 352, 435, 496, 580, 606
Hpy188III TCNNGA 5 cut(s) 175, 254, 293, 403, 626
Hpy8I GTNNAC 2 cut(s) 106, 427
HpyAV CCTTC 2 cut(s) 754, 832
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 106, 217, 281, 321, 511, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
HpyF3I CTNAG 3 cut(s) 204, 372, 434
HpySE526I ACGT 1 cut(s) 505
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 5 cut(s) 57, 296, 307, 328, 723
HspAI GCGC 2 cut(s) 458, 637
KasI GGCGCC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 4 cut(s) 289, 382, 601, 812
Lsp1109I GCAGC 2 cut(s) 247, 454
LweI GCATC 3 cut(s) 135, 204, 330
MaeI CTAG 1 cut(s) 645
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 94, 115, 172
MalI GATC 4 cut(s) 291, 384, 603, 814
MboI GATC 4 cut(s) 289, 382, 601, 812
MboII GAAGA 8 cut(s) 22, 43, 223, 377, 509, 596, 788, 820
MhlI GDGCHC 3 cut(s) 108, 169, 357
MluCI AATT 3 cut(s) 346, 396, 653
Mly113I GGCGCC 1 cut(s) 458
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 519, 543
MnlI CCTC 9 cut(s) 239, 247, 281, 289, 448, 540, 586, 684, 783
MseI TTAA 2 cut(s) 681, 850
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
NarI GGCGCC 1 cut(s) 458
NdeI CATATG 1 cut(s) 513
NdeII GATC 4 cut(s) 289, 382, 601, 812
NlaIII CATG 5 cut(s) 57, 296, 307, 328, 723
NlaIV GGNNCC 4 cut(s) 166, 235, 459, 706
NmuCI GTSAC 3 cut(s) 94, 115, 172
NspI RCATGY 1 cut(s) 57
NspV TTCGAA 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 101
PagI TCATGA 1 cut(s) 292
PfeI GAWTC 3 cut(s) 406, 572, 752
PkrI GCNGC 2 cut(s) 262, 469
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 256
Psp1406I AACGTT 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 4 cut(s) 166, 235, 459, 706
PspPI GGNCC 4 cut(s) 145, 221, 233, 705
RseI CAYNNNNRTG 1 cut(s) 101
Rsr2I CGGWCCG 1 cut(s) 221
RsrII CGGWCCG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 681, 850
SatI GCNGC 2 cut(s) 261, 468
Sau3AI GATC 4 cut(s) 289, 382, 601, 812
Sau96I GGNCC 4 cut(s) 145, 221, 233, 705
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 3 cut(s) 108, 169, 357
SetI ASST 7 cut(s) 84, 114, 262, 287, 415, 508, 702
SfaNI GCATC 3 cut(s) 135, 204, 330
SfoI GGCGCC 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 388
SinI GGWCC 3 cut(s) 221, 233, 705
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 401, 452
SmoI CTYRAG 2 cut(s) 401, 452
Sse9I AATT 3 cut(s) 346, 396, 653
SsiI CCGC 2 cut(s) 40, 805
SspDI GGCGCC 1 cut(s) 457
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 508
TaqI TCGA 1 cut(s) 388
TaqII GACCGA 1 cut(s) 221
TasI AATT 3 cut(s) 346, 396, 653
TfiI GAWTC 3 cut(s) 406, 572, 752
Tru1I TTAA 2 cut(s) 681, 850
Tru9I TTAA 2 cut(s) 681, 850
TseFI GTSAC 3 cut(s) 94, 115, 172
TseI GCWGC 2 cut(s) 260, 467
Tsp45I GTSAC 3 cut(s) 94, 115, 172
TspDTI ATGAA 3 cut(s) 597, 708, 789
TspGWI ACGGA 1 cut(s) 832
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 221, 233, 705
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.