Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Reverse (-)

24756993 .. 24758781

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGAGTGAAGAAGCAGAAGCGTCACAGGAAGATTGTGCGGTTCTACACAGCTTGTTATGGGTTCAGACAGCCGTATAAGGTGCTCTGTGATGTCACTTTTGTGCATCACCTGGTCACCCATCGCATCACCCCTGCTGACAAGGCCCTTTCTCATATCGTTGGTGCCCCTGTCACGCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTTCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCATGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGATCTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATGCCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

282

Amino Acids

32.08

Weight (kDa)

9.77

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	54 - 152	3e-23	Fcf1
UTP23_sensor	PF24779	227 - 244	2.9e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 457
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	40, 802
AclWI	GGATC	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	786, 835
AgsI	TTSAA	5 cut(s)	211, 257, 629, 739, 753
AjnI	CCWGG	2 cut(s)	111, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	53, 260
AluI	AGCT	2 cut(s)	53, 260
Alw21I	GWGCWC	2 cut(s)	87, 357
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	630
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	260, 467
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	3 cut(s)	460, 477, 639
AspS9I	GGNCC	3 cut(s)	145, 233, 701
AsuHPI	GGTGA	3 cut(s)	101, 109, 121
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	2 cut(s)	233, 701
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	164, 457
Bbv12I	GWGCWC	2 cut(s)	87, 357
BbvI	GCAGC	2 cut(s)	247, 454
BccI	CCATC	3 cut(s)	129, 469, 836
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	113, 411
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	645
BfoI	RGCGCY	2 cut(s)	461, 478
BisI	GCNGC	2 cut(s)	261, 468
BlsI	GCNGC	2 cut(s)	262, 469
Bme1390I	CCNGG	2 cut(s)	113, 411
Bme18I	GGWCC	2 cut(s)	233, 701
BmgT120I	GGNCC	3 cut(s)	145, 233, 701
BmiI	GGNNCC	4 cut(s)	166, 235, 459, 702
BmrFI	CCNGG	2 cut(s)	113, 411
BmsI	GCATC	5 cut(s)	115, 135, 204, 330, 766
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu14I	TTCGAA	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	786, 835
Bse1I	ACTGG	2 cut(s)	478, 780
BseBI	CCWGG	2 cut(s)	113, 411
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	786, 835
BseMII	CTCAG	3 cut(s)	195, 386, 425
BseNI	ACTGG	2 cut(s)	478, 780
BseRI	GAGGAG	1 cut(s)	802
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	247, 454
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	164, 457
BsiHKAI	GWGCWC	2 cut(s)	87, 357
BslFI	GGGAC	2 cut(s)	219, 401
BslI	CCNNNNNNNGG	2 cut(s)	786, 835
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	219, 401
BsnI	GGCC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	388
Bsp1286I	GDGCHC	3 cut(s)	87, 169, 357
Bsp143I	GATC	5 cut(s)	289, 382, 601, 622, 809
BspACI	CCGC	2 cut(s)	40, 802
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	196, 385, 426
BspHI	TCATGA	2 cut(s)	292, 402
BspLI	GGNNCC	4 cut(s)	166, 235, 459, 702
BspPI	GGATC	1 cut(s)	630
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	2 cut(s)	164, 457
BsrI	ACTGG	2 cut(s)	478, 780
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	289, 382, 601, 622, 809
BssNAI	GTATAC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	458
Bst1107I	GTATAC	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	113, 411
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	378, 509
BstDEI	CTNAG	3 cut(s)	204, 372, 434
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	2 cut(s)	461, 478
BstHHI	GCGC	3 cut(s)	460, 477, 639
BstKTI	GATC	5 cut(s)	292, 385, 604, 625, 812
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	5 cut(s)	289, 382, 601, 622, 809
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
BstNI	CCWGG	2 cut(s)	113, 411
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	111, 409
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	247, 454
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BstZ17I	GTATAC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	378, 509
CciI	TCATGA	2 cut(s)	292, 402
CfoI	GCGC	3 cut(s)	460, 477, 639
Cfr13I	GGNCC	3 cut(s)	145, 233, 701
CseI	GACGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	111
CviAII	CATG	5 cut(s)	293, 304, 325, 403, 717
CviJI	RGCY	9 cut(s)	53, 73, 146, 228, 260, 270, 302, 380, 724
CviKI_1	RGCY	9 cut(s)	53, 73, 146, 228, 260, 270, 302, 380, 724
DdeI	CTNAG	3 cut(s)	204, 372, 434
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	5 cut(s)	291, 384, 603, 624, 811
DpnII	GATC	5 cut(s)	289, 382, 601, 622, 809
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco47I	GGWCC	2 cut(s)	233, 701
Eco57I	CTGAAG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	111, 409
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	5 cut(s)	296, 307, 328, 406, 720
FaqI	GGGAC	2 cut(s)	219, 401
FatI	CATG	5 cut(s)	292, 303, 324, 402, 716
FauNDI	CATATG	1 cut(s)	513
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	261, 468
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	261, 468
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	3 cut(s)	459, 476, 638
GluI	GCNGC	2 cut(s)	261, 468
GsaI	CCCAGC	1 cut(s)	475
HaeII	RGCGCY	2 cut(s)	461, 478
HaeIII	GGCC	1 cut(s)	146
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	3 cut(s)	460, 477, 639
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	5 cut(s)	296, 307, 328, 406, 720
Hin6I	GCGC	3 cut(s)	458, 475, 637
HinP1I	GCGC	3 cut(s)	458, 475, 637
HinfI	GANTC	5 cut(s)	248, 406, 556, 572, 749
HphI	GGTGA	3 cut(s)	101, 109, 121
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	7 cut(s)	68, 247, 352, 435, 496, 580, 606
Hpy188III	TCNNGA	4 cut(s)	254, 293, 403, 626
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	751, 829
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	6 cut(s)	106, 217, 281, 321, 511, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
HpyF3I	CTNAG	3 cut(s)	204, 372, 434
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	296, 307, 328, 406, 720
HspAI	GCGC	3 cut(s)	458, 475, 637
KasI	GGCGCC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 382, 601, 622, 809
Lsp1109I	GCAGC	2 cut(s)	247, 454
LweI	GCATC	5 cut(s)	115, 135, 204, 330, 766
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	4 cut(s)	23, 94, 115, 172
MalI	GATC	5 cut(s)	291, 384, 603, 624, 811
MboI	GATC	5 cut(s)	289, 382, 601, 622, 809
MboII	GAAGA	8 cut(s)	22, 43, 223, 377, 509, 596, 785, 817
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	3 cut(s)	87, 169, 357
MluCI	AATT	3 cut(s)	346, 396, 653
Mly113I	GGCGCC	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	519, 543
MnlI	CCTC	9 cut(s)	239, 247, 281, 289, 448, 540, 586, 684, 780
MseI	TTAA	2 cut(s)	681, 847
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	113, 411
MvaI	CCWGG	2 cut(s)	113, 411
MwoI	GCNNNNNNNGC	4 cut(s)	143, 308, 457, 464
NarI	GGCGCC	1 cut(s)	458
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	5 cut(s)	289, 382, 601, 622, 809
NlaIII	CATG	5 cut(s)	296, 307, 328, 406, 720
NlaIV	GGNNCC	4 cut(s)	166, 235, 459, 702
NmuCI	GTSAC	4 cut(s)	23, 94, 115, 172
NspV	TTCGAA	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	101
PagI	TCATGA	2 cut(s)	292, 402
PfeI	GAWTC	4 cut(s)	406, 556, 572, 749
PkrI	GCNGC	2 cut(s)	262, 469
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	2 cut(s)	111, 409
PspEI	GGTNACC	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	2 cut(s)	111, 409
PspN4I	GGNNCC	4 cut(s)	166, 235, 459, 702
PspPI	GGNCC	3 cut(s)	145, 233, 701
PsuI	RGATCY	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	681, 847
SatI	GCNGC	2 cut(s)	261, 468
Sau3AI	GATC	5 cut(s)	289, 382, 601, 622, 809
Sau96I	GGNCC	3 cut(s)	145, 233, 701
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	113, 411
SduI	GDGCHC	3 cut(s)	87, 169, 357
SetI	ASST	6 cut(s)	55, 84, 114, 262, 287, 415
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	5 cut(s)	115, 135, 204, 330, 766
SfoI	GGCGCC	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	2 cut(s)	233, 701
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	346, 396, 653
SsiI	CCGC	2 cut(s)	40, 802
SspDI	GGCGCC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	111, 409
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	224, 388
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	346, 396, 653
TfiI	GAWTC	4 cut(s)	406, 556, 572, 749
Tru1I	TTAA	2 cut(s)	681, 847
Tru9I	TTAA	2 cut(s)	681, 847
TseFI	GTSAC	4 cut(s)	23, 94, 115, 172
TseI	GCWGC	2 cut(s)	260, 467
Tsp45I	GTSAC	4 cut(s)	23, 94, 115, 172
TspDTI	ATGAA	3 cut(s)	597, 705, 786
TspGWI	ACGGA	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	233, 701
XapI	RAATTY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.