RLG00000013990

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003163
Physical Location & Seq
Reverse (-)
45267241 .. 45268783
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013990

Sequence Viewer

Length: 606 bp
ATGCACGGTCCGAGCCTTGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGACAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTCTGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATGTGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATGTGTTGGAAAATGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACTCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGACTCAAGGAAGAATGATGAAGATACTGGTATGAGGAGTAGAAAGAAGCGGAAGAGATCTCGGAAAGGCAAAAACCTTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

9.24

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 6 - 58 5.1e-10 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 221
AfiI CCNNNNNNNGG 2 cut(s) 17, 592
AgsI TTSAA 3 cut(s) 44, 392, 502
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 47, 230
AspLEI GCGC 3 cut(s) 223, 240, 402
AspS9I GGNCC 3 cut(s) 8, 20, 464
AvaII GGWCC 3 cut(s) 8, 20, 464
BanI GGYRCC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 34, 217
BccI CCATC 2 cut(s) 232, 593
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 408
BfoI RGCGCY 2 cut(s) 224, 241
BglII AGATCT 1 cut(s) 566
BisI GCNGC 2 cut(s) 48, 231
BlsI GCNGC 2 cut(s) 49, 232
Bme18I GGWCC 3 cut(s) 8, 20, 464
BmgT120I GGNCC 3 cut(s) 8, 20, 464
BmiI GGNNCC 3 cut(s) 22, 222, 465
BmsI GCATC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpuEI CTTGAG 2 cut(s) 236, 499
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 592
Bse1I ACTGG 2 cut(s) 241, 541
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 17, 592
BseMII CTCAG 2 cut(s) 173, 188
BseNI ACTGG 2 cut(s) 241, 541
BseRI GAGGAG 1 cut(s) 559
BseXI GCAGC 2 cut(s) 34, 217
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 401
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 2 cut(s) 6, 164
BslI CCNNNNNNNGG 2 cut(s) 17, 592
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 6, 164
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 76, 169, 364, 566
BspACI CCGC 1 cut(s) 559
BspCNI CTCAG 2 cut(s) 172, 189
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 22, 222, 465
BspT107I GGYRCC 1 cut(s) 220
BsrI ACTGG 2 cut(s) 241, 541
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 76, 169, 364, 566
BssNAI GTATAC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 557
BstACI GRCGYC 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 165, 272, 384
BstDEI CTNAG 2 cut(s) 159, 197
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 2 cut(s) 224, 241
BstHHI GCGC 3 cut(s) 223, 240, 402
BstKTI GATC 4 cut(s) 79, 172, 367, 569
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 76, 169, 364, 566
BstMWI GCNNNNNNNGC 3 cut(s) 95, 220, 227
BstNSI RCATGY 1 cut(s) 278
BstV1I GCAGC 2 cut(s) 34, 217
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BstZ17I GTATAC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 165, 272, 384
CciI TCATGA 1 cut(s) 79
CfoI GCGC 3 cut(s) 223, 240, 402
Cfr13I GGNCC 3 cut(s) 8, 20, 464
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 5 cut(s) 80, 91, 112, 275, 480
CviJI RGCY 7 cut(s) 15, 47, 57, 89, 167, 386, 487
CviKI_1 RGCY 7 cut(s) 15, 47, 57, 89, 167, 386, 487
DdeI CTNAG 2 cut(s) 159, 197
DinI GGCGCC 1 cut(s) 222
DpnI GATC 4 cut(s) 78, 171, 366, 568
DpnII GATC 4 cut(s) 76, 169, 364, 566
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 8, 20, 464
Eco57I CTGAAG 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 16
EgeI GGCGCC 1 cut(s) 222
EheI GGCGCC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 5 cut(s) 83, 94, 115, 278, 483
FaiI YATR 8 cut(s) 81, 92, 113, 190, 276, 294, 481, 542
FaqI GGGAC 2 cut(s) 6, 164
FatI CATG 5 cut(s) 79, 90, 111, 274, 479
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 48, 231
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 48, 231
FspBI CTAG 1 cut(s) 408
GlaI GCGC 3 cut(s) 222, 239, 401
GluI GCNGC 2 cut(s) 48, 231
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 2 cut(s) 224, 241
HhaI GCGC 3 cut(s) 223, 240, 402
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 5 cut(s) 83, 94, 115, 278, 483
Hin6I GCGC 3 cut(s) 221, 238, 400
HinP1I GCGC 3 cut(s) 221, 238, 400
HinfI GANTC 3 cut(s) 35, 335, 512
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 8 cut(s) 12, 34, 139, 198, 259, 343, 369, 573
Hpy188III TCNNGA 2 cut(s) 41, 80
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 4, 68, 108, 274, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 220, 227
HpyF3I CTNAG 2 cut(s) 159, 197
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 5 cut(s) 83, 94, 115, 278, 483
HspAI GCGC 3 cut(s) 221, 238, 400
KasI GGCGCC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 169, 364, 566
LpnPI CCDG 7 cut(s) 149, 195, 248, 254, 368, 522, 522
Lsp1109I GCAGC 2 cut(s) 34, 217
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 277
MalI GATC 4 cut(s) 78, 171, 366, 568
MboI GATC 4 cut(s) 76, 169, 364, 566
MboII GAAGA 5 cut(s) 272, 359, 532, 542, 574
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 133, 416
Mly113I GGCGCC 1 cut(s) 221
MlyI GAGTC 2 cut(s) 44, 506
MmeI TCCRAC 2 cut(s) 282, 306
MnlI CCTC 8 cut(s) 34, 68, 76, 211, 303, 349, 447, 537
MseI TTAA 2 cut(s) 444, 604
MwoI GCNNNNNNNGC 3 cut(s) 95, 220, 227
NarI GGCGCC 1 cut(s) 221
NdeII GATC 4 cut(s) 76, 169, 364, 566
NlaIII CATG 5 cut(s) 83, 94, 115, 278, 483
NlaIV GGNNCC 3 cut(s) 22, 222, 465
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 278
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 49, 232
PleI GAGTC 2 cut(s) 43, 506
PluTI GGCGCC 1 cut(s) 224
PpsI GAGTC 2 cut(s) 43, 506
PspFI CCCAGC 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 22, 222, 465
PspPI GGNCC 3 cut(s) 8, 20, 464
PsuI RGATCY 1 cut(s) 566
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 444, 604
SatI GCNGC 2 cut(s) 48, 231
Sau3AI GATC 4 cut(s) 76, 169, 364, 566
Sau96I GGNCC 3 cut(s) 8, 20, 464
SchI GAGTC 2 cut(s) 44, 506
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 49, 74, 588
SfaNI GCATC 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 222
SinI GGWCC 3 cut(s) 8, 20, 464
SmlI CTYRAG 2 cut(s) 215, 514
SmoI CTYRAG 2 cut(s) 215, 514
Sse9I AATT 2 cut(s) 133, 416
SsiI CCGC 1 cut(s) 559
SspDI GGCGCC 1 cut(s) 220
SspMI CTAG 1 cut(s) 408
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 8
TasI AATT 2 cut(s) 133, 416
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 444, 604
Tru9I TTAA 2 cut(s) 444, 604
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 2 cut(s) 47, 230
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 360, 468, 543
VpaK11BI GGWCC 3 cut(s) 8, 20, 464
XagI CCTNNNNNAGG 1 cut(s) 590
XceI RCATGY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.