RLG00000013963

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003163
Physical Location & Seq
Forward (+)
44775142 .. 44776697
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013963

Sequence Viewer

Length: 645 bp
ATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATGCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCAAGTTACAGTCTCTTTCTGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGGTTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGATCAATATTCCGATGCTTATGTATTCTTTTTCTTGCAAATTTGCAGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

215

Amino Acids

24.25

Weight (kDa)

9.67

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 6 - 66 4.1e-12 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 485
AciI CCGC 1 cut(s) 598
AcsI RAATTY 2 cut(s) 183, 488
AcuI CTGAAG 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 17, 582, 631
AgsI TTSAA 4 cut(s) 44, 380, 535, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 42, 204
ApeKI GCWGC 2 cut(s) 47, 218
ApoI RAATTY 2 cut(s) 183, 488
AspLEI GCGC 3 cut(s) 211, 228, 390
AspS9I GGNCC 3 cut(s) 8, 20, 497
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 3 cut(s) 8, 20, 497
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 34, 205
BccI CCATC 2 cut(s) 220, 632
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 42, 204
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 48, 219
BlsI GCNGC 2 cut(s) 49, 220
Bme18I GGWCC 3 cut(s) 8, 20, 497
BmgT120I GGNCC 3 cut(s) 8, 20, 497
BmiI GGNNCC 2 cut(s) 22, 325
BmsI GCATC 2 cut(s) 117, 453
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 582, 631
Bse1I ACTGG 2 cut(s) 229, 576
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 17, 582, 631
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 229, 576
BseRI GAGGAG 1 cut(s) 598
BseXI GCAGC 2 cut(s) 34, 205
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 17, 582, 631
BsmAI GTCTC 2 cut(s) 42, 204
BsmFI GGGAC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 5 cut(s) 76, 169, 352, 450, 605
BspACI CCGC 1 cut(s) 598
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 22, 325
BspMI ACCTGC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 175
BsrI ACTGG 2 cut(s) 229, 576
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 5 cut(s) 76, 169, 352, 450, 605
Bst4CI ACNGT 2 cut(s) 8, 198
Bst6I CTCTTC 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 165, 260, 372
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 3 cut(s) 211, 228, 390
BstKTI GATC 5 cut(s) 79, 172, 355, 453, 608
BstMAI GTCTC 2 cut(s) 42, 204
BstMBI GATC 5 cut(s) 76, 169, 352, 450, 605
BstMWI GCNNNNNNNGC 2 cut(s) 95, 215
BstV1I GCAGC 2 cut(s) 34, 205
BtsCI GGATG 1 cut(s) 121
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 3 cut(s) 165, 260, 372
CciI TCATGA 1 cut(s) 79
CfoI GCGC 3 cut(s) 211, 228, 390
Cfr13I GGNCC 3 cut(s) 8, 20, 497
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 4 cut(s) 80, 91, 112, 513
CviJI RGCY 7 cut(s) 15, 47, 57, 89, 167, 374, 520
CviKI_1 RGCY 7 cut(s) 15, 47, 57, 89, 167, 374, 520
DdeI CTNAG 1 cut(s) 159
DpnI GATC 5 cut(s) 78, 171, 354, 452, 607
DpnII GATC 5 cut(s) 76, 169, 352, 450, 605
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco47I GGWCC 3 cut(s) 8, 20, 497
Eco57I CTGAAG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 183
FaeI CATG 4 cut(s) 83, 94, 115, 516
FaiI YATR 9 cut(s) 81, 92, 113, 264, 266, 282, 470, 514, 581
FaqI GGGAC 1 cut(s) 6
FatI CATG 4 cut(s) 79, 90, 111, 512
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 48, 219
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 48, 219
FspBI CTAG 1 cut(s) 396
GlaI GCGC 3 cut(s) 210, 227, 389
GluI GCNGC 2 cut(s) 48, 219
GsaI CCCAGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 229
HhaI GCGC 3 cut(s) 211, 228, 390
Hin1II CATG 4 cut(s) 83, 94, 115, 516
Hin6I GCGC 3 cut(s) 209, 226, 388
HinP1I GCGC 3 cut(s) 209, 226, 388
HinfI GANTC 3 cut(s) 35, 307, 545
Hpy188I TCNGA 6 cut(s) 12, 34, 247, 331, 357, 462
Hpy188III TCNNGA 2 cut(s) 41, 80
HpyAV CCTTC 2 cut(s) 547, 625
HpyCH4III ACNGT 2 cut(s) 8, 198
HpyCH4V TGCA 7 cut(s) 4, 68, 108, 262, 370, 486, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 215
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 4 cut(s) 83, 94, 115, 516
HspAI GCGC 3 cut(s) 209, 226, 388
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 5 cut(s) 76, 169, 352, 450, 605
LpnPI CCDG 8 cut(s) 149, 236, 242, 356, 480, 555, 589, 639
Lsp1109I GCAGC 2 cut(s) 34, 205
LweI GCATC 2 cut(s) 117, 453
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 192
MalI GATC 5 cut(s) 78, 171, 354, 452, 607
MboI GATC 5 cut(s) 76, 169, 352, 450, 605
MboII GAAGA 5 cut(s) 164, 260, 347, 581, 613
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 183, 404, 488
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 270, 294
MnlI CCTC 8 cut(s) 26, 34, 68, 76, 291, 337, 435, 576
MseI TTAA 2 cut(s) 432, 643
MwoI GCNNNNNNNGC 2 cut(s) 95, 215
NdeI CATATG 1 cut(s) 264
NdeII GATC 5 cut(s) 76, 169, 352, 450, 605
NlaIII CATG 4 cut(s) 83, 94, 115, 516
NlaIV GGNNCC 2 cut(s) 22, 325
NmeAIII GCCGAG 1 cut(s) 163
NspV TTCGAA 1 cut(s) 175
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 2 cut(s) 307, 545
PkrI GCNGC 2 cut(s) 49, 220
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 22, 325
PspPI GGNCC 3 cut(s) 8, 20, 497
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 432, 643
SatI GCNGC 2 cut(s) 48, 219
Sau3AI GATC 5 cut(s) 76, 169, 352, 450, 605
Sau96I GGNCC 3 cut(s) 8, 20, 497
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 49, 74, 499
SfaNI GCATC 2 cut(s) 117, 453
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 3 cut(s) 8, 20, 497
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 3 cut(s) 183, 404, 488
SsiI CCGC 1 cut(s) 598
SspI AATATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 8, 198
TaqI TCGA 1 cut(s) 175
TaqII GACCGA 1 cut(s) 8
TasI AATT 3 cut(s) 183, 404, 488
TfiI GAWTC 2 cut(s) 307, 545
Tru1I TTAA 2 cut(s) 432, 643
Tru9I TTAA 2 cut(s) 432, 643
TseI GCWGC 2 cut(s) 47, 218
TspDTI ATGAA 3 cut(s) 348, 501, 582
TspGWI ACGGA 1 cut(s) 625
VpaK11BI GGWCC 3 cut(s) 8, 20, 497
XapI RAATTY 2 cut(s) 183, 488
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.