pycom09g17820

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003163
Physical Location & Seq
Reverse (-)
18315327 .. 18317131
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17820.4

Sequence Viewer

Length: 636 bp
ATGCTTGGTCCTTCGTATTCACAGTCTCTTGAAGCTGCTAATAGCCTTATTACTGCAAGGTGTGATCACGAGAGTCACGTGAGTGCTGAAGATTGTATATTGGATGTTGTTGGGCAAAGTAATTCCGAGCACTTCTTTGTTGCTACTCAGCACGTTGATCTTCGTCGGAAACTTCTCAAGATACCAGGTGTCCCTGCTATTTATGCTCTGAGGACTGCTCTTTTGCTTGAGTCCCCTTCTGATGCCCAACACCAATTTGTCAAAGCTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGAAGAAGAAAAAGAATATTCCGAATTCTCTTAAAATAAACGATCCTCCTGGTGAAGAAGATGGTTCTGGAGATCAGAACATTGAAGCGCAGGCTGTAGCAAAGAGGGATACTGCTAGGATAGGATTGGGCGTGAAGGATAAAGTTCAATTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCGTGTAAAAAGAAAAAGACGAAAAAGCCAGATCTTCATTCTGCACAGGAAGGGAAGGATGGAGATGCTACTTTGAGGAGTCGTAAGAAACGGAGTAGGTCACGGAAAGGCAAAAAGACTCTGGAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

212

Amino Acids

23.42

Weight (kDa)

9.66

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 108, 291
AcvI CACGTG 1 cut(s) 79
AgsI TTSAA 4 cut(s) 32, 316, 398, 461
AjnI CCWGG 2 cut(s) 184, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 2 cut(s) 35, 266
AluI AGCT 2 cut(s) 35, 266
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 337
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 2 cut(s) 8, 485
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 2 cut(s) 8, 485
BauI CACGAG 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 22
BccI CCATC 3 cut(s) 368, 551, 623
BciT130I CCWGG 2 cut(s) 186, 363
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 415
BglII AGATCT 1 cut(s) 529
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 186, 363
Bme18I GGWCC 2 cut(s) 8, 485
BmgT120I GGNCC 2 cut(s) 8, 485
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 2 cut(s) 186, 363
BmsI GCATC 2 cut(s) 232, 553
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpmI CTGGAG 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 161, 248
BsaAI YACGTR 1 cut(s) 79
BseBI CCWGG 2 cut(s) 186, 363
BseGI GGATG 2 cut(s) 109, 562
BseMII CTCAG 2 cut(s) 161, 200
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 2 cut(s) 176, 217
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 176, 217
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 5 cut(s) 64, 157, 355, 385, 529
BspCNI CTCAG 2 cut(s) 160, 201
BspLI GGNNCC 1 cut(s) 486
BspPI GGATC 1 cut(s) 350
BssMI GATC 5 cut(s) 64, 157, 355, 385, 529
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 186, 363
Bst4CI ACNGT 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 284, 405
BstDEI CTNAG 2 cut(s) 147, 209
BstF5I GGATG 2 cut(s) 109, 562
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 5 cut(s) 67, 160, 358, 388, 532
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 5 cut(s) 64, 157, 355, 385, 529
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 186, 363
BstSCI CCNGG 2 cut(s) 184, 361
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuI GTATCC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 109, 562
Cac8I GCNNGC 2 cut(s) 284, 405
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 2 cut(s) 8, 485
CsiI ACCWGGT 1 cut(s) 184
CviJI RGCY 5 cut(s) 35, 45, 266, 407, 526
CviKI_1 RGCY 5 cut(s) 35, 45, 266, 407, 526
DdeI CTNAG 2 cut(s) 147, 209
DpnI GATC 5 cut(s) 66, 159, 357, 387, 531
DpnII GATC 5 cut(s) 64, 157, 355, 385, 529
Eco47I GGWCC 2 cut(s) 8, 485
Eco57I CTGAAG 2 cut(s) 108, 291
Eco72I CACGTG 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 184, 361
FaiI YATR 5 cut(s) 98, 204, 288, 290, 306
FaqI GGGAC 2 cut(s) 176, 217
FauNDI CATATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 116, 569
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 402
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 402
HhaI GCGC 1 cut(s) 403
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 4 cut(s) 73, 230, 577, 616
HphI GGTGA 1 cut(s) 377
Hpy188I TCNGA 7 cut(s) 127, 168, 210, 241, 271, 336, 390
Hpy188III TCNNGA 5 cut(s) 29, 68, 178, 381, 620
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 5 cut(s) 21, 246, 442, 542, 547
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 2 cut(s) 78, 153
HpyCH4V TGCA 3 cut(s) 56, 286, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 147, 209
HpySE526I ACGT 2 cut(s) 78, 153
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 5 cut(s) 64, 157, 355, 385, 529
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 232, 553
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 78, 153
MaeIII GTNAC 2 cut(s) 74, 597
MalI GATC 5 cut(s) 66, 159, 357, 387, 531
MboI GATC 5 cut(s) 64, 157, 355, 385, 529
MboII GAAGA 8 cut(s) 101, 152, 284, 328, 331, 380, 383, 524
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 121, 254, 337, 461
MlyI GAGTC 4 cut(s) 82, 239, 586, 610
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 6 cut(s) 204, 369, 411, 468, 567, 616
MseI TTAA 3 cut(s) 345, 465, 634
MslI CAYNNNNRTG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 186, 363
MvaI CCWGG 2 cut(s) 186, 363
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeI CATATG 1 cut(s) 288
NdeII GATC 5 cut(s) 64, 157, 355, 385, 529
NlaIV GGNNCC 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 74, 597
OliI CACNNNNGTG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 4 cut(s) 81, 238, 585, 610
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
PpsI GAGTC 4 cut(s) 81, 238, 585, 610
Ppu21I YACGTR 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 184, 361
PspCI CACGTG 1 cut(s) 79
PspGI CCWGG 2 cut(s) 184, 361
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 2 cut(s) 8, 485
PsuI RGATCY 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 3 cut(s) 345, 465, 634
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 64, 157, 355, 385, 529
Sau96I GGNCC 2 cut(s) 8, 485
SchI GAGTC 4 cut(s) 82, 239, 586, 610
ScrFI CCNGG 2 cut(s) 186, 363
SduI GDGCHC 1 cut(s) 132
SetI ASST 7 cut(s) 37, 62, 81, 156, 190, 268, 599
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 2 cut(s) 232, 553
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 2 cut(s) 8, 485
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 176, 227
SmoI CTYRAG 2 cut(s) 176, 227
Sse9I AATT 4 cut(s) 121, 254, 337, 461
SspI AATATT 1 cut(s) 331
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 2 cut(s) 184, 361
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 2 cut(s) 81, 156
TasI AATT 4 cut(s) 121, 254, 337, 461
Tru1I TTAA 3 cut(s) 345, 465, 634
Tru9I TTAA 3 cut(s) 345, 465, 634
TseFI GTSAC 2 cut(s) 74, 597
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 74, 597
TspDTI ATGAA 1 cut(s) 524
TspGWI ACGGA 2 cut(s) 604, 616
VpaK11BI GGWCC 2 cut(s) 8, 485
XapI RAATTY 1 cut(s) 337
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.