Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Forward (+)

44594644 .. 44600414

Gene Structure 5771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTGTTGTTGGTTCTTCTACTAACCATTGTAGTGCAGTTGCTATCCCTCAGTTGGCTACTGTTTTAGTTATGCCGTATAAGGTGCTCAGTGATGTCACTTTTGTGCATCACCTTGTCACCCATCGCATCACCCCTGCTGACAAGGCCCTTTCTCATATCCTTGGTGCCCCTGTCACGCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAAATGCACGGACGAGCCTCGGTCCCTCCCATTCCAAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGGGCACTTTTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCGGTTCGTCAAAACTTCTGAAGAACAATGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTATGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCACACTACCAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAATCAAGCAGCAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

255

Amino Acids

28.1

Weight (kDa)

9.61

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	54 - 147	1e-17	Fcf1
UTP23_sensor	PF24779	222 - 239	2.5e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 442
AccI	GTMKAC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	55, 462
AgsI	TTSAA	5 cut(s)	214, 259, 614, 724, 738
AjnI	CCWGG	2 cut(s)	394, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	257
AoxI	GGCC	2 cut(s)	147, 759
ApeKI	GCWGC	3 cut(s)	262, 452, 754
ApoI	RAATTY	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	445, 462
AspS9I	GGNCC	3 cut(s)	148, 235, 686
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	104, 112, 124
AsuII	TTCGAA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	235, 686
BaeGI	GKGCMC	2 cut(s)	172, 342
BanI	GGYRCC	2 cut(s)	167, 442
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	249, 439
BccI	CCATC	2 cut(s)	132, 454
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	396, 631
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	763
BfoI	RGCGCY	2 cut(s)	446, 463
BisI	GCNGC	3 cut(s)	263, 453, 755
BlsI	GCNGC	3 cut(s)	264, 454, 756
Bme1390I	CCNGG	3 cut(s)	337, 396, 631
Bme18I	GGWCC	2 cut(s)	235, 686
BmgT120I	GGNCC	3 cut(s)	148, 235, 686
BmiI	GGNNCC	4 cut(s)	169, 237, 444, 687
BmrFI	CCNGG	3 cut(s)	337, 396, 631
BmsI	GCATC	3 cut(s)	118, 138, 315
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	371, 458
BpuMI	CCSGG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	163, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 462
Bse118I	RCCGGY	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	396, 631
BseDI	CCNNGG	2 cut(s)	163, 231
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	55, 462
BseMII	CTCAG	5 cut(s)	65, 103, 198, 371, 410
BseSI	GKGCMC	2 cut(s)	172, 342
BseXI	GCAGC	2 cut(s)	249, 439
BseYI	CCCAGC	1 cut(s)	456
BsgI	GTGCAG	2 cut(s)	57, 623
BshFI	GGCC	2 cut(s)	149, 761
BshNI	GGYRCC	2 cut(s)	167, 442
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	336, 463
BslFI	GGGAC	2 cut(s)	221, 386
BslI	CCNNNNNNNGG	2 cut(s)	55, 462
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	221, 386
BsnI	GGCC	2 cut(s)	149, 761
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	3 cut(s)	90, 172, 342
Bsp143I	GATC	2 cut(s)	367, 586
BspANI	GGCC	2 cut(s)	149, 761
BspCNI	CTCAG	5 cut(s)	64, 102, 199, 370, 411
BspLI	GGNNCC	4 cut(s)	169, 237, 444, 687
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	167, 442
BsrFI	RCCGGY	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	2 cut(s)	163, 231
BssMI	GATC	2 cut(s)	367, 586
BssNAI	GTATAC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	396, 631
Bst4CI	ACNGT	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	5 cut(s)	285, 363, 494, 606, 759
BstDEI	CTNAG	5 cut(s)	51, 89, 207, 357, 419
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	2 cut(s)	446, 463
BstHHI	GCGC	2 cut(s)	445, 462
BstKTI	GATC	2 cut(s)	370, 589
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	367, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 293, 442, 449
BstNI	CCWGG	2 cut(s)	396, 631
BstSCI	CCNGG	3 cut(s)	335, 394, 629
BstSLI	GKGCMC	2 cut(s)	172, 342
BstV1I	GCAGC	2 cut(s)	249, 439
BstZ17I	GTATAC	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	149, 761
BtgZI	GCGATG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	5 cut(s)	285, 363, 494, 606, 759
CfoI	GCGC	2 cut(s)	445, 462
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	148, 235, 686
CviAII	CATG	3 cut(s)	289, 310, 702
DdeI	CTNAG	5 cut(s)	51, 89, 207, 357, 419
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	2 cut(s)	369, 588
DpnII	GATC	2 cut(s)	367, 586
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	235, 686
Eco57I	CTGAAG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	394, 629
EcoT14I	CCWWGG	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	292, 313, 705
FaqI	GGGAC	2 cut(s)	221, 386
FatI	CATG	3 cut(s)	288, 309, 701
FauNDI	CATATG	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	263, 453, 755
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	263, 453, 755
FspBI	CTAG	1 cut(s)	763
GlaI	GCGC	2 cut(s)	444, 461
GluI	GCNGC	3 cut(s)	263, 453, 755
GsaI	CCCAGC	1 cut(s)	460
HaeII	RGCGCY	2 cut(s)	446, 463
HaeIII	GGCC	2 cut(s)	149, 761
HapII	CCGG	2 cut(s)	336, 463
HhaI	GCGC	2 cut(s)	445, 462
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	292, 313, 705
Hin6I	GCGC	2 cut(s)	443, 460
HinP1I	GCGC	2 cut(s)	443, 460
HinfI	GANTC	4 cut(s)	391, 541, 557, 734
HpaII	CCGG	2 cut(s)	336, 463
HphI	GGTGA	3 cut(s)	104, 112, 124
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	420, 481, 565, 591
Hpy188III	TCNNGA	2 cut(s)	256, 388
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	736
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	7 cut(s)	38, 109, 220, 283, 306, 496, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 293, 442, 449
HpyF3I	CTNAG	5 cut(s)	51, 89, 207, 357, 419
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	292, 313, 705
HspAI	GCGC	2 cut(s)	443, 460
KasI	GGCGCC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	367, 586
Lsp1109I	GCAGC	2 cut(s)	249, 439
LweI	GCATC	3 cut(s)	118, 138, 315
MaeI	CTAG	1 cut(s)	763
MaeIII	GTNAC	3 cut(s)	97, 118, 175
MalI	GATC	2 cut(s)	369, 588
MboI	GATC	2 cut(s)	367, 586
MboII	GAAGA	4 cut(s)	9, 362, 494, 581
MhlI	GDGCHC	3 cut(s)	90, 172, 342
MluCI	AATT	3 cut(s)	331, 381, 638
Mly113I	GGCGCC	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	504, 528
MnlI	CCTC	8 cut(s)	60, 241, 249, 283, 433, 525, 571, 669
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	2 cut(s)	33, 104
MspI	CCGG	2 cut(s)	336, 463
MspR9I	CCNGG	3 cut(s)	337, 396, 631
MvaI	CCWGG	2 cut(s)	396, 631
MwoI	GCNNNNNNNGC	4 cut(s)	146, 293, 442, 449
NarI	GGCGCC	1 cut(s)	443
NciI	CCSGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	2 cut(s)	367, 586
NlaIII	CATG	3 cut(s)	292, 313, 705
NlaIV	GGNNCC	4 cut(s)	169, 237, 444, 687
NmuCI	GTSAC	3 cut(s)	97, 118, 175
NspV	TTCGAA	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	391, 541, 557, 734
PkrI	GCNGC	3 cut(s)	264, 454, 756
PluTI	GGCGCC	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	394, 629
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	2 cut(s)	394, 629
PspN4I	GGNNCC	4 cut(s)	169, 237, 444, 687
PspPI	GGNCC	3 cut(s)	148, 235, 686
RseI	CAYNNNNRTG	2 cut(s)	33, 104
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	263, 453, 755
Sau3AI	GATC	2 cut(s)	367, 586
Sau96I	GGNCC	3 cut(s)	148, 235, 686
ScrFI	CCNGG	3 cut(s)	337, 396, 631
SduI	GDGCHC	3 cut(s)	90, 172, 342
SetI	ASST	4 cut(s)	87, 117, 264, 400
SfaNI	GCATC	3 cut(s)	118, 138, 315
SfoI	GGCGCC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	373
SinI	GGWCC	2 cut(s)	235, 686
SmiMI	CAYNNNNRTG	2 cut(s)	33, 104
SmlI	CTYRAG	2 cut(s)	386, 437
SmoI	CTYRAG	2 cut(s)	386, 437
Sse9I	AATT	3 cut(s)	331, 381, 638
SseBI	AGGCCT	1 cut(s)	761
SspDI	GGCGCC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	763
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	3 cut(s)	335, 394, 629
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	373
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	331, 381, 638
TfiI	GAWTC	4 cut(s)	391, 541, 557, 734
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	3 cut(s)	97, 118, 175
TseI	GCWGC	3 cut(s)	262, 452, 754
Tsp45I	GTSAC	3 cut(s)	97, 118, 175
TspDTI	ATGAA	2 cut(s)	582, 690
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	235, 686
XapI	RAATTY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.