Rroxscaffold_3G00234740

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003163
Physical Location & Seq
Reverse (-)
21362209 .. 21363781
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234740.1

Sequence Viewer

Length: 630 bp
ATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCAAGATTCCAGGTGTCCCTGTTGTACACGCTCTGAGAACTGCTCTTTTGCTTGAGGTGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAATGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGTTCAGTTTAAGAGAAAGAGGGCAAGGGGTCCAAACCTCCTTTCATGTAAGCCAAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

209

Amino Acids

23.6

Weight (kDa)

9.55

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 6 - 81 3.9e-18 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 1 cut(s) 583
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 17, 567, 616
AgsI TTSAA 4 cut(s) 44, 416, 520, 534
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 47, 254
ApoI RAATTY 1 cut(s) 183
AspLEI GCGC 2 cut(s) 264, 426
AspS9I GGNCC 3 cut(s) 8, 20, 482
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 3 cut(s) 8, 20, 482
BanI GGYRCC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 34, 241
BccI CCATC 2 cut(s) 256, 617
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 2 cut(s) 48, 255
BlsI GCNGC 2 cut(s) 49, 256
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 3 cut(s) 8, 20, 482
BmgT120I GGNCC 3 cut(s) 8, 20, 482
BmiI GGNNCC 3 cut(s) 22, 246, 483
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 214, 246
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 173, 260
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 567, 616
Bse1I ACTGG 2 cut(s) 265, 561
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 17, 567, 616
BseMII CTCAG 2 cut(s) 173, 212
BseNI ACTGG 2 cut(s) 265, 561
BseRI GAGGAG 1 cut(s) 583
BseXI GCAGC 2 cut(s) 34, 241
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 2 cut(s) 6, 188
BslI CCNNNNNNNGG 3 cut(s) 17, 567, 616
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 6, 188
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 4 cut(s) 76, 169, 388, 590
BspACI CCGC 1 cut(s) 583
BspCNI CTCAG 2 cut(s) 172, 213
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 22, 246, 483
BspT104I TTCGAA 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 211
BsrI ACTGG 2 cut(s) 265, 561
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 76, 169, 388, 590
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 581
BstAUI TGTACA 1 cut(s) 211
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 165, 296, 408
BstDEI CTNAG 2 cut(s) 159, 221
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 426
BstKTI GATC 4 cut(s) 79, 172, 391, 593
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 76, 169, 388, 590
BstMWI GCNNNNNNNGC 2 cut(s) 95, 244
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 34, 241
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 165, 296, 408
CciI TCATGA 1 cut(s) 79
CfoI GCGC 2 cut(s) 264, 426
Cfr13I GGNCC 3 cut(s) 8, 20, 482
CpoI CGGWCCG 1 cut(s) 8
Csp6I GTAC 1 cut(s) 212
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 4 cut(s) 80, 91, 112, 498
CviJI RGCY 7 cut(s) 15, 47, 57, 89, 167, 410, 505
CviKI_1 RGCY 7 cut(s) 15, 47, 57, 89, 167, 410, 505
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 2 cut(s) 159, 221
DpnI GATC 4 cut(s) 78, 171, 390, 592
DpnII GATC 4 cut(s) 76, 169, 388, 590
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco47I GGWCC 3 cut(s) 8, 20, 482
Eco57I CTGAAG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 4 cut(s) 83, 94, 115, 501
FaiI YATR 8 cut(s) 81, 92, 113, 300, 302, 318, 499, 566
FaqI GGGAC 2 cut(s) 6, 188
FatI CATG 4 cut(s) 79, 90, 111, 497
FauNDI CATATG 1 cut(s) 300
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 48, 255
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 48, 255
FspBI CTAG 1 cut(s) 432
GlaI GCGC 2 cut(s) 263, 425
GluI GCNGC 2 cut(s) 48, 255
GsaI CCCAGC 1 cut(s) 262
HaeII RGCGCY 1 cut(s) 265
HhaI GCGC 2 cut(s) 264, 426
Hin1II CATG 4 cut(s) 83, 94, 115, 501
Hin6I GCGC 2 cut(s) 262, 424
HinP1I GCGC 2 cut(s) 262, 424
HinfI GANTC 5 cut(s) 35, 193, 343, 359, 530
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 7 cut(s) 12, 34, 139, 222, 283, 367, 393
Hpy188III TCNNGA 3 cut(s) 41, 80, 190
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 532, 610
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 4, 68, 108, 298, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 244
HpyF3I CTNAG 2 cut(s) 159, 221
Hsp92II CATG 4 cut(s) 83, 94, 115, 501
HspAI GCGC 2 cut(s) 262, 424
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 169, 388, 590
Lsp1109I GCAGC 2 cut(s) 34, 241
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 432
MalI GATC 4 cut(s) 78, 171, 390, 592
MboI GATC 4 cut(s) 76, 169, 388, 590
MboII GAAGA 5 cut(s) 164, 296, 383, 566, 598
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 133, 183, 440
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 306, 330
MseI TTAA 2 cut(s) 462, 628
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 95, 244
NdeI CATATG 1 cut(s) 300
NdeII GATC 4 cut(s) 76, 169, 388, 590
NlaIII CATG 4 cut(s) 83, 94, 115, 501
NlaIV GGNNCC 3 cut(s) 22, 246, 483
NspV TTCGAA 1 cut(s) 175
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 4 cut(s) 193, 343, 359, 530
PkrI GCNGC 2 cut(s) 49, 256
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 22, 246, 483
PspPI GGNCC 3 cut(s) 8, 20, 482
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 462, 628
SatI GCNGC 2 cut(s) 48, 255
Sau3AI GATC 4 cut(s) 76, 169, 388, 590
Sau96I GGNCC 3 cut(s) 8, 20, 482
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 144
SetI ASST 5 cut(s) 49, 74, 202, 246, 492
SfaNI GCATC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 3 cut(s) 8, 20, 482
SmlI CTYRAG 2 cut(s) 188, 239
SmoI CTYRAG 2 cut(s) 188, 239
Sse9I AATT 3 cut(s) 133, 183, 440
SsiI CCGC 1 cut(s) 583
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 175
TaqII GACCGA 1 cut(s) 8
TasI AATT 3 cut(s) 133, 183, 440
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 4 cut(s) 193, 343, 359, 530
Tru1I TTAA 2 cut(s) 462, 628
Tru9I TTAA 2 cut(s) 462, 628
TseI GCWGC 2 cut(s) 47, 254
TspDTI ATGAA 3 cut(s) 384, 486, 567
TspGWI ACGGA 1 cut(s) 610
VpaK11BI GGWCC 3 cut(s) 8, 20, 482
XapI RAATTY 1 cut(s) 183
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.