Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Forward (+)

20338061 .. 20339978

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAGTGATGTTGGAGGACACAAAATGAGAGTGAAGAAGCAGAAGCGTCACAGGAAGATTGTGCGGTTCTACACAGCTTGTTATGGGTTCAGACAGCCGTATAAGGTGCTCTGTGATGTCACTTTTGTGCATCACCTTGTCACCCATCGCATCACCCCTGCTGACAAGGCCCTTTCTCATATCGTTGGTGCCCCTGTCACGCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTTCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATACTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCACCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATATGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCACACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGCCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

290

Amino Acids

32.86

Weight (kDa)

9.78

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	62 - 160	6.7e-24	Fcf1
UTP23_sensor	PF24779	235 - 252	3e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 481
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	2 cut(s)	64, 826
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	810, 859
AgsI	TTSAA	5 cut(s)	235, 281, 653, 763, 777
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	721, 753
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	77, 284
AluI	AGCT	2 cut(s)	77, 284
Alw21I	GWGCWC	2 cut(s)	111, 381
Alw26I	GTCTC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	168, 724
ApaI	GGGCCC	1 cut(s)	728
ApeKI	GCWGC	2 cut(s)	284, 491
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	4 cut(s)	169, 257, 724, 725
AsuHPI	GGTGA	3 cut(s)	125, 133, 145
AsuII	TTCGAA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	2 cut(s)	193, 728
BanI	GGYRCC	2 cut(s)	188, 481
BanII	GRGCYC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	111, 381
BbvI	GCAGC	2 cut(s)	271, 478
BccI	CCATC	3 cut(s)	153, 493, 860
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	502
BisI	GCNGC	2 cut(s)	285, 492
BlsI	GCNGC	2 cut(s)	286, 493
Bme1390I	CCNGG	1 cut(s)	435
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	4 cut(s)	169, 257, 724, 725
BmiI	GGNNCC	4 cut(s)	190, 259, 483, 726
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	4 cut(s)	139, 159, 228, 354
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
Bpu14I	TTCGAA	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	410, 497
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	2 cut(s)	810, 859
Bse1I	ACTGG	2 cut(s)	502, 804
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	810, 859
BseMII	CTCAG	3 cut(s)	219, 410, 449
BseNI	ACTGG	2 cut(s)	502, 804
BseRI	GAGGAG	1 cut(s)	826
BseSI	GKGCMC	2 cut(s)	193, 728
BseXI	GCAGC	2 cut(s)	271, 478
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	662
BshFI	GGCC	2 cut(s)	170, 726
BshNI	GGYRCC	2 cut(s)	188, 481
BsiHKAI	GWGCWC	2 cut(s)	111, 381
BslFI	GGGAC	2 cut(s)	243, 425
BslI	CCNNNNNNNGG	2 cut(s)	810, 859
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	243, 425
BsnI	GGCC	2 cut(s)	170, 726
Bsp119I	TTCGAA	1 cut(s)	412
Bsp120I	GGGCCC	1 cut(s)	724
Bsp1286I	GDGCHC	4 cut(s)	111, 193, 381, 728
Bsp143I	GATC	4 cut(s)	313, 406, 625, 833
BspACI	CCGC	2 cut(s)	64, 826
BspANI	GGCC	2 cut(s)	170, 726
BspCNI	CTCAG	3 cut(s)	220, 409, 450
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	4 cut(s)	190, 259, 483, 726
BspT104I	TTCGAA	1 cut(s)	412
BspT107I	GGYRCC	2 cut(s)	188, 481
BsrI	ACTGG	2 cut(s)	502, 804
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	4 cut(s)	313, 406, 625, 833
BssNAI	GTATAC	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	824
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	402, 533, 645
BstDEI	CTNAG	3 cut(s)	228, 396, 458
BstF5I	GGATG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	502
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	4 cut(s)	316, 409, 628, 836
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	4 cut(s)	313, 406, 625, 833
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 332, 488
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	2 cut(s)	193, 728
BstV1I	GCAGC	2 cut(s)	271, 478
BstZ17I	GTATAC	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	170, 726
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	402, 533, 645
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	4 cut(s)	169, 257, 724, 725
CseI	GACGC	1 cut(s)	35
CviAII	CATG	4 cut(s)	317, 328, 349, 741
DdeI	CTNAG	3 cut(s)	228, 396, 458
DpnI	GATC	4 cut(s)	315, 408, 627, 835
DpnII	GATC	4 cut(s)	313, 406, 625, 833
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco24I	GRGCYC	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	2 cut(s)	169, 724
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	728
FaeI	CATG	4 cut(s)	320, 331, 352, 744
FaqI	GGGAC	2 cut(s)	243, 425
FatI	CATG	4 cut(s)	316, 327, 348, 740
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	285, 492
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	728
Fsp4HI	GCNGC	2 cut(s)	285, 492
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	2 cut(s)	285, 492
GsaI	CCCAGC	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	502
HaeIII	GGCC	2 cut(s)	170, 726
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	320, 331, 352, 744
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HinfI	GANTC	4 cut(s)	272, 430, 596, 773
HphI	GGTGA	3 cut(s)	125, 133, 145
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	7 cut(s)	92, 271, 376, 459, 520, 604, 630
Hpy188III	TCNNGA	3 cut(s)	278, 317, 427
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	775, 853
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	6 cut(s)	130, 241, 305, 345, 535, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 332, 488
HpyF3I	CTNAG	3 cut(s)	228, 396, 458
Hsp92II	CATG	4 cut(s)	320, 331, 352, 744
HspAI	GCGC	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	313, 406, 625, 833
Lsp1109I	GCAGC	2 cut(s)	271, 478
LweI	GCATC	4 cut(s)	139, 159, 228, 354
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	4 cut(s)	47, 118, 139, 196
MalI	GATC	4 cut(s)	315, 408, 627, 835
MboI	GATC	4 cut(s)	313, 406, 625, 833
MboII	GAAGA	8 cut(s)	46, 67, 247, 401, 533, 620, 809, 841
MhlI	GDGCHC	4 cut(s)	111, 193, 381, 728
MluCI	AATT	2 cut(s)	370, 677
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	543, 567
MseI	TTAA	1 cut(s)	705
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	167, 332, 488
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	4 cut(s)	313, 406, 625, 833
NlaIII	CATG	4 cut(s)	320, 331, 352, 744
NlaIV	GGNNCC	4 cut(s)	190, 259, 483, 726
NmuCI	GTSAC	4 cut(s)	47, 118, 139, 196
NspV	TTCGAA	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	125
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	430, 596, 773
PkrI	GCNGC	2 cut(s)	286, 493
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	190, 259, 483, 726
PspOMI	GGGCCC	1 cut(s)	724
PspPI	GGNCC	4 cut(s)	169, 257, 724, 725
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	705
SatI	GCNGC	2 cut(s)	285, 492
Sau3AI	GATC	4 cut(s)	313, 406, 625, 833
Sau96I	GGNCC	4 cut(s)	169, 257, 724, 725
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	4 cut(s)	111, 193, 381, 728
SetI	ASST	6 cut(s)	79, 108, 138, 286, 311, 439
SfaNI	GCATC	4 cut(s)	139, 159, 228, 354
SfuI	TTCGAA	1 cut(s)	412
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	425, 476
SmoI	CTYRAG	2 cut(s)	425, 476
Sse9I	AATT	2 cut(s)	370, 677
SsiI	CCGC	2 cut(s)	64, 826
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	248, 412
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	370, 677
TfiI	GAWTC	3 cut(s)	430, 596, 773
Tru1I	TTAA	1 cut(s)	705
Tru9I	TTAA	1 cut(s)	705
TseFI	GTSAC	4 cut(s)	47, 118, 139, 196
TseI	GCWGC	2 cut(s)	284, 491
Tsp45I	GTSAC	4 cut(s)	47, 118, 139, 196
TspDTI	ATGAA	3 cut(s)	621, 729, 810
TspGWI	ACGGA	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.