Rroxscaffold_3G00236090

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003163
Physical Location & Seq
Forward (+)
23286452 .. 23295176
8725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236090.1

Sequence Viewer

Length: 597 bp
ATGCACGGTCCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATAAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAGAGAATTCTCAAGAACTGCTCTTTTGCTTGAGGTGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAATGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGGGTCCAAACCCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGACGATACCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

198

Amino Acids

22.42

Weight (kDa)

9.33

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 6 - 64 1.1e-11 Fcf1
UTP23_sensor PF24779 143 - 160 1.8e-06 UTP23 sensor motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AciI CCGC 1 cut(s) 550
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 17, 534, 583
AgsI TTSAA 4 cut(s) 44, 383, 487, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 47, 221
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 2 cut(s) 231, 393
AspS9I GGNCC 3 cut(s) 8, 20, 449
AsuII TTCGAA 1 cut(s) 175
AvaII GGWCC 3 cut(s) 8, 20, 449
BanI GGYRCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 34, 208
BccI CCATC 2 cut(s) 223, 584
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 232
BisI GCNGC 2 cut(s) 48, 222
BlsI GCNGC 2 cut(s) 49, 223
Bme18I GGWCC 3 cut(s) 8, 20, 449
BmgT120I GGNCC 3 cut(s) 8, 20, 449
BmiI GGNNCC 3 cut(s) 22, 213, 450
BmsI GCATC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 172, 227
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 534, 583
Bse1I ACTGG 2 cut(s) 232, 528
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 17, 534, 583
BseMII CTCAG 1 cut(s) 173
BseNI ACTGG 2 cut(s) 232, 528
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 34, 208
BseYI CCCAGC 1 cut(s) 225
BsgI GTGCAG 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 3 cut(s) 17, 534, 583
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 76, 169, 355, 557
BspACI CCGC 1 cut(s) 550
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 22, 213, 450
BspT104I TTCGAA 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 232, 528
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 76, 169, 355, 557
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 2 cut(s) 172, 548
BstBI TTCGAA 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 165, 263, 375
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 231, 393
BstKTI GATC 4 cut(s) 79, 172, 358, 560
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 76, 169, 355, 557
BstMWI GCNNNNNNNGC 2 cut(s) 95, 211
BstV1I GCAGC 2 cut(s) 34, 208
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 165, 263, 375
CciI TCATGA 1 cut(s) 79
CfoI GCGC 2 cut(s) 231, 393
Cfr13I GGNCC 3 cut(s) 8, 20, 449
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 3 cut(s) 80, 112, 465
CviJI RGCY 7 cut(s) 15, 47, 57, 89, 167, 377, 472
CviKI_1 RGCY 7 cut(s) 15, 47, 57, 89, 167, 377, 472
DdeI CTNAG 1 cut(s) 159
DpnI GATC 4 cut(s) 78, 171, 357, 559
DpnII GATC 4 cut(s) 76, 169, 355, 557
Eam1104I CTCTTC 2 cut(s) 172, 548
EarI CTCTTC 2 cut(s) 172, 548
Eco47I GGWCC 3 cut(s) 8, 20, 449
Eco57I CTGAAG 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 182
FaeI CATG 3 cut(s) 83, 115, 468
FaiI YATR 8 cut(s) 81, 92, 113, 267, 269, 285, 466, 533
FaqI GGGAC 1 cut(s) 6
FatI CATG 3 cut(s) 79, 111, 464
FauNDI CATATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 48, 222
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 48, 222
FspBI CTAG 1 cut(s) 399
GlaI GCGC 2 cut(s) 230, 392
GluI GCNGC 2 cut(s) 48, 222
GsaI CCCAGC 1 cut(s) 229
HaeII RGCGCY 1 cut(s) 232
HhaI GCGC 2 cut(s) 231, 393
Hin1II CATG 3 cut(s) 83, 115, 468
Hin6I GCGC 2 cut(s) 229, 391
HinP1I GCGC 2 cut(s) 229, 391
HinfI GANTC 4 cut(s) 35, 310, 326, 497
Hpy188I TCNGA 6 cut(s) 12, 34, 139, 250, 334, 360
Hpy188III TCNNGA 3 cut(s) 41, 80, 189
HpyAV CCTTC 2 cut(s) 499, 577
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 4, 68, 108, 265, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 211
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 3 cut(s) 83, 115, 468
HspAI GCGC 2 cut(s) 229, 391
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 169, 355, 557
LpnPI CCDG 7 cut(s) 149, 239, 245, 359, 507, 541, 591
Lsp1109I GCAGC 2 cut(s) 34, 208
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 399
MalI GATC 4 cut(s) 78, 171, 357, 559
MboI GATC 4 cut(s) 76, 169, 355, 557
MboII GAAGA 5 cut(s) 164, 189, 263, 350, 565
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 133, 182, 407
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 273, 297
MnlI CCTC 9 cut(s) 26, 34, 68, 76, 202, 294, 340, 432, 528
MseI TTAA 2 cut(s) 429, 595
MwoI GCNNNNNNNGC 2 cut(s) 95, 211
NdeI CATATG 1 cut(s) 267
NdeII GATC 4 cut(s) 76, 169, 355, 557
NlaIII CATG 3 cut(s) 83, 115, 468
NlaIV GGNNCC 3 cut(s) 22, 213, 450
NspV TTCGAA 1 cut(s) 175
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 3 cut(s) 310, 326, 497
PkrI GCNGC 2 cut(s) 49, 223
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 22, 213, 450
PspPI GGNCC 3 cut(s) 8, 20, 449
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SaqAI TTAA 2 cut(s) 429, 595
SatI GCNGC 2 cut(s) 48, 222
Sau3AI GATC 4 cut(s) 76, 169, 355, 557
Sau96I GGNCC 3 cut(s) 8, 20, 449
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 49, 74, 213
SfaNI GCATC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 175
SinI GGWCC 3 cut(s) 8, 20, 449
SmlI CTYRAG 2 cut(s) 187, 206
SmoI CTYRAG 2 cut(s) 187, 206
Sse9I AATT 3 cut(s) 133, 182, 407
SsiI CCGC 1 cut(s) 550
SspMI CTAG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 175
TaqII GACCGA 1 cut(s) 8
TasI AATT 3 cut(s) 133, 182, 407
TfiI GAWTC 3 cut(s) 310, 326, 497
Tru1I TTAA 2 cut(s) 429, 595
Tru9I TTAA 2 cut(s) 429, 595
TseI GCWGC 2 cut(s) 47, 221
TspDTI ATGAA 2 cut(s) 351, 453
TspGWI ACGGA 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 8, 20, 449
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.