Rw0G021310

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00979
OG0003163
Physical Location & Seq
Forward (+)
25022 .. 26785
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G021310.1

Sequence Viewer

Length: 894 bp
ATGAGAGTGAAGAAGCAGAAGCGTCACAGGAAGATAGTGCGGTTCTACACAGCTTGTTATGGGTTCAGACAGCCGTATAAGGTGCTCTGTGATGTCACTTTTGTGCATCACCTTGTCACCCATCGCATCACCCCTGCTGACAAGGCCCTTTCTCATATCGTTGGTGCCCCTGTCACGCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCACGGTTCGAGCCTCGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCTAACAGCCTCATTACTGCAAGGTGTGATCATGAGGAAGCCATGAGTGCTGATGATTGCATCATGGATGTTATTGGCAAAGATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCTGATCTTCGAAAGAGAATTCTCATGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCGCCATCTGCTGCCCAGCGCCAGTTCGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATAAGATGTTGGAAAAGAGGGCAAAGAATCTGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTGTGGAGATCAGAACTTGGAAGTGCAGGATCTTGAAAAGAAGCGCACTACTAGGAAAGAATTGGGTGTGAAAGATAAAGTTCAGTTTAAGAGAAAGAGGGCAAAGATCAATATTCCAATGCTTATGTATTCTTTTTCTTGCAAATTTGCAGGGTCCAAACCCCTTTCATGTAAGCCGAAAAAGACTTTGAAAAGACCAGATTCAAGGAAGGAAAAGAATGATGAAGATGCCAGTATGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAACCCTGTGAAGGCAGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fcf1

Protein Analysis

297

Amino Acids

33.83

Weight (kDa)

9.77

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf1 PF04900 54 - 152 3.3e-23 Fcf1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 164, 457
AccI GTMKAC 1 cut(s) 426
AciI CCGC 2 cut(s) 40, 847
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 2 cut(s) 396, 737
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 831, 880
AgsI TTSAA 5 cut(s) 211, 257, 629, 784, 798
AjnI CCWGG 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 2 cut(s) 53, 260
AluI AGCT 2 cut(s) 53, 260
Alw21I GWGCWC 2 cut(s) 87, 357
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 630
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 260, 467
ApoI RAATTY 2 cut(s) 396, 737
AspLEI GCGC 3 cut(s) 460, 477, 639
AspS9I GGNCC 3 cut(s) 145, 233, 747
AsuHPI GGTGA 3 cut(s) 101, 109, 121
AsuII TTCGAA 1 cut(s) 388
AvaII GGWCC 2 cut(s) 233, 747
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 2 cut(s) 164, 457
Bbv12I GWGCWC 2 cut(s) 87, 357
BbvI GCAGC 2 cut(s) 247, 454
BccI CCATC 3 cut(s) 129, 469, 881
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 645
BfoI RGCGCY 2 cut(s) 461, 478
BisI GCNGC 2 cut(s) 261, 468
BlsI GCNGC 2 cut(s) 262, 469
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 2 cut(s) 233, 747
BmgT120I GGNCC 3 cut(s) 145, 233, 747
BmiI GGNNCC 4 cut(s) 166, 235, 459, 748
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 115, 135, 204, 330, 811
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu14I TTCGAA 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 831, 880
Bse1I ACTGG 2 cut(s) 478, 825
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 831, 880
BseMII CTCAG 3 cut(s) 195, 386, 425
BseNI ACTGG 2 cut(s) 478, 825
BseRI GAGGAG 1 cut(s) 847
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 2 cut(s) 247, 454
BseYI CCCAGC 1 cut(s) 471
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 2 cut(s) 164, 457
BsiHKAI GWGCWC 2 cut(s) 87, 357
BslFI GGGAC 2 cut(s) 219, 401
BslI CCNNNNNNNGG 2 cut(s) 831, 880
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 2 cut(s) 219, 401
BsnI GGCC 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 87, 169, 357
Bsp143I GATC 6 cut(s) 289, 382, 601, 622, 699, 854
BspACI CCGC 2 cut(s) 40, 847
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 196, 385, 426
BspHI TCATGA 2 cut(s) 292, 402
BspLI GGNNCC 4 cut(s) 166, 235, 459, 748
BspPI GGATC 1 cut(s) 630
BspT104I TTCGAA 1 cut(s) 388
BspT107I GGYRCC 2 cut(s) 164, 457
BsrI ACTGG 2 cut(s) 478, 825
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 6 cut(s) 289, 382, 601, 622, 699, 854
BssNAI GTATAC 1 cut(s) 427
BssNI GRCGYC 1 cut(s) 458
Bst1107I GTATAC 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 845
BstACI GRCGYC 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 378, 509
BstDEI CTNAG 3 cut(s) 204, 372, 434
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 2 cut(s) 461, 478
BstHHI GCGC 3 cut(s) 460, 477, 639
BstKTI GATC 6 cut(s) 292, 385, 604, 625, 702, 857
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 6 cut(s) 289, 382, 601, 622, 699, 854
BstMWI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 247, 454
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 427
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 378, 509
CciI TCATGA 2 cut(s) 292, 402
CfoI GCGC 3 cut(s) 460, 477, 639
Cfr13I GGNCC 3 cut(s) 145, 233, 747
CseI GACGC 1 cut(s) 11
CviAII CATG 5 cut(s) 293, 304, 325, 403, 762
CviJI RGCY 9 cut(s) 53, 73, 146, 228, 260, 270, 302, 380, 769
CviKI_1 RGCY 9 cut(s) 53, 73, 146, 228, 260, 270, 302, 380, 769
DdeI CTNAG 3 cut(s) 204, 372, 434
DinI GGCGCC 1 cut(s) 459
DpnI GATC 6 cut(s) 291, 384, 603, 624, 701, 856
DpnII GATC 6 cut(s) 289, 382, 601, 622, 699, 854
Eam1104I CTCTTC 1 cut(s) 845
EarI CTCTTC 1 cut(s) 845
Eco47I GGWCC 2 cut(s) 233, 747
Eco57I CTGAAG 1 cut(s) 516
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 409
EgeI GGCGCC 1 cut(s) 459
EheI GGCGCC 1 cut(s) 459
FaeI CATG 5 cut(s) 296, 307, 328, 406, 765
FaqI GGGAC 2 cut(s) 219, 401
FatI CATG 5 cut(s) 292, 303, 324, 402, 761
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 261, 468
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 261, 468
FspBI CTAG 1 cut(s) 645
GlaI GCGC 3 cut(s) 459, 476, 638
GluI GCNGC 2 cut(s) 261, 468
GsaI CCCAGC 1 cut(s) 475
HaeII RGCGCY 2 cut(s) 461, 478
HaeIII GGCC 1 cut(s) 146
HgaI GACGC 1 cut(s) 11
HhaI GCGC 3 cut(s) 460, 477, 639
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 5 cut(s) 296, 307, 328, 406, 765
Hin6I GCGC 3 cut(s) 458, 475, 637
HinP1I GCGC 3 cut(s) 458, 475, 637
HinfI GANTC 5 cut(s) 248, 406, 556, 572, 794
HphI GGTGA 3 cut(s) 101, 109, 121
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 7 cut(s) 68, 247, 352, 435, 496, 580, 606
Hpy188III TCNNGA 4 cut(s) 254, 293, 403, 626
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 796, 874
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 8 cut(s) 106, 217, 281, 321, 511, 619, 735, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
HpyF3I CTNAG 3 cut(s) 204, 372, 434
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 5 cut(s) 296, 307, 328, 406, 765
HspAI GCGC 3 cut(s) 458, 475, 637
KasI GGCGCC 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 6 cut(s) 289, 382, 601, 622, 699, 854
Lsp1109I GCAGC 2 cut(s) 247, 454
LweI GCATC 5 cut(s) 115, 135, 204, 330, 811
MaeI CTAG 1 cut(s) 645
MaeIII GTNAC 4 cut(s) 23, 94, 115, 172
MalI GATC 6 cut(s) 291, 384, 603, 624, 701, 856
MboI GATC 6 cut(s) 289, 382, 601, 622, 699, 854
MboII GAAGA 8 cut(s) 22, 43, 223, 377, 509, 596, 830, 862
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 3 cut(s) 87, 169, 357
MluCI AATT 4 cut(s) 346, 396, 653, 737
Mly113I GGCGCC 1 cut(s) 458
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 519, 543
MnlI CCTC 9 cut(s) 239, 247, 281, 289, 448, 540, 586, 684, 825
MseI TTAA 2 cut(s) 681, 892
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 143, 308, 457, 464
NarI GGCGCC 1 cut(s) 458
NdeI CATATG 1 cut(s) 513
NdeII GATC 6 cut(s) 289, 382, 601, 622, 699, 854
NlaIII CATG 5 cut(s) 296, 307, 328, 406, 765
NlaIV GGNNCC 4 cut(s) 166, 235, 459, 748
NmuCI GTSAC 4 cut(s) 23, 94, 115, 172
NspV TTCGAA 1 cut(s) 388
OliI CACNNNNGTG 1 cut(s) 101
PagI TCATGA 2 cut(s) 292, 402
PfeI GAWTC 4 cut(s) 406, 556, 572, 794
PkrI GCNGC 2 cut(s) 262, 469
PleI GAGTC 1 cut(s) 256
PluTI GGCGCC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 4 cut(s) 166, 235, 459, 748
PspPI GGNCC 3 cut(s) 145, 233, 747
PsuI RGATCY 1 cut(s) 622
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 681, 892
SatI GCNGC 2 cut(s) 261, 468
Sau3AI GATC 6 cut(s) 289, 382, 601, 622, 699, 854
Sau96I GGNCC 3 cut(s) 145, 233, 747
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 3 cut(s) 87, 169, 357
SetI ASST 6 cut(s) 55, 84, 114, 262, 287, 415
SfaNI GCATC 5 cut(s) 115, 135, 204, 330, 811
SfoI GGCGCC 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 388
SinI GGWCC 2 cut(s) 233, 747
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 346, 396, 653, 737
SsiI CCGC 2 cut(s) 40, 847
SspDI GGCGCC 1 cut(s) 457
SspI AATATT 1 cut(s) 706
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 224, 388
TaqII GACCGA 1 cut(s) 221
TasI AATT 4 cut(s) 346, 396, 653, 737
TfiI GAWTC 4 cut(s) 406, 556, 572, 794
Tru1I TTAA 2 cut(s) 681, 892
Tru9I TTAA 2 cut(s) 681, 892
TseFI GTSAC 4 cut(s) 23, 94, 115, 172
TseI GCWGC 2 cut(s) 260, 467
Tsp45I GTSAC 4 cut(s) 23, 94, 115, 172
TspDTI ATGAA 3 cut(s) 597, 750, 831
TspGWI ACGGA 1 cut(s) 874
VpaK11BI GGWCC 2 cut(s) 233, 747
XapI RAATTY 2 cut(s) 396, 737
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.