Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2780670 .. 2784953

Gene Structure 4284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G024800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGAGTGAAAAAGCAGAGGAGGCACAGGAAGATAGTGCGGTTCTACACAGCATGCTATGGGTTGAGACAGCCGTACAAGGTGCTATGTGATGTGAATTTTGTGCATCACCTCGTCGTCAATCGCATTACGCCTGCTGACAAGGCCCTCGCTAATATCCTGGGTGCCCCTGTCATGCTTTTCACCACCAAATGCGCTATCAGTGAGTTGAAAAAGCAAGATCTCAGACATGTTCCTTCCCATTCTCAGGCTCTTGAAGCTGCAGAGAGCCTCATTACTGCAAGGTGCGATCATGAGAGAGCCATGAGTGCTGATGATTGCATCATGGATATTATTGGTCAGAATAATCCCGAGCACTTCCTTGTTGCTACTCAGCATGCCGATCTTCGTGAGAAAATTCTCAAGATACCAGGTGTCCCAGCTATATATGCTCTGAGAACCGCTCTTTTTCTTGAGTCCCCATCTGCCGCTCAACGGCAATTTGTCAAAACTTCTGAAGAACAACGCTTGCATATGACTGACTTGGAATATGAGATGTTGACAAAGGGGACAAAGAATATGTCGACTACTCATCAAGAAAAGGATCGCTCTGATGAAGATGGTTTTGGAGATCAGAACTTGGAAGTGCAGGCTGTAGCAAAGAAGCATACTGCTAGGAAAGGATTGGGTGTGAAGGATAAAGTTCAGTTTAAGAGAAAGAAGGCAAAGGGTCCAAACCCCCTTTCGTGTAAGAAGAAAAAGACTTTGAAAAACCCAGATCTTCATTCAGTACAGGAAAGGAAGGATGGAGATGCTACTTTGAGGAGTCGTAAGAAGCGGAATAGGTCGCGGAAAGGCAAAAGGCCTGTCGAGGCGGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

288

Amino Acids

32.62

Weight (kDa)

9.89

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	2 cut(s)	443, 470
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	1 cut(s)	829
AciI	CCGC	6 cut(s)	40, 441, 468, 817, 829, 854
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	2 cut(s)	97, 396
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	2 cut(s)	77, 771
AfiI	CCNNNNNNNGG	2 cut(s)	247, 474
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	211, 257, 748
AjnI	CCWGG	2 cut(s)	159, 409
AjuI	GAANNNNNNNTTGG	4 cut(s)	588, 620, 706, 738
AluBI	AGCT	2 cut(s)	260, 422
AluI	AGCT	2 cut(s)	260, 422
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	591
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	144, 842
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	2 cut(s)	97, 396
ArsI	GACNNNNNNTTYG	4 cut(s)	545, 577, 831, 863
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	145, 710
AsuHPI	GGTGA	2 cut(s)	101, 175
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	4 cut(s)	469, 593, 779, 851
BceAI	ACGGC	2 cut(s)	58, 491
BciT130I	CCWGG	2 cut(s)	161, 411
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	261, 633
BglII	AGATCT	2 cut(s)	220, 757
BisI	GCNGC	2 cut(s)	261, 468
BlsI	GCNGC	2 cut(s)	262, 469
Bme1390I	CCNGG	2 cut(s)	161, 411
Bme18I	GGWCC	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	145, 710
BmiI	GGNNCC	2 cut(s)	166, 711
BmrFI	CCNGG	2 cut(s)	161, 411
BmsI	GCATC	3 cut(s)	115, 330, 781
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpuEI	CTTGAG	2 cut(s)	386, 473
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 474
BseBI	CCWGG	2 cut(s)	161, 411
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	790, 862
BseLI	CCNNNNNNNGG	2 cut(s)	247, 474
BseMII	CTCAG	4 cut(s)	238, 260, 386, 425
BseRI	GAGGAG	2 cut(s)	34, 817
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	146, 844
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	350
BslFI	GGGAC	3 cut(s)	401, 442, 562
BslI	CCNNNNNNNGG	2 cut(s)	247, 474
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	3 cut(s)	401, 442, 562
BsnI	GGCC	2 cut(s)	146, 844
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	169, 357
Bsp143I	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
BspACI	CCGC	6 cut(s)	40, 441, 468, 817, 829, 854
BspANI	GGCC	2 cut(s)	146, 844
BspCNI	CTCAG	4 cut(s)	237, 259, 385, 426
BspFNI	CGCG	1 cut(s)	829
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	166, 711
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	2 cut(s)	443, 470
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
Bst2UI	CCWGG	2 cut(s)	161, 411
BstC8I	GCNNGC	5 cut(s)	55, 135, 378, 509, 630
BstDEI	CTNAG	4 cut(s)	224, 246, 372, 434
BstF5I	GGATG	2 cut(s)	790, 862
BstFNI	CGCG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	6 cut(s)	223, 292, 385, 586, 613, 760
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 143, 257, 308, 428
BstNI	CCWGG	2 cut(s)	161, 411
BstNSI	RCATGY	3 cut(s)	57, 233, 380
BstSCI	CCNGG	2 cut(s)	159, 409
BstSFI	CTRYAG	2 cut(s)	261, 633
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	220, 757
BstYI	RGATCY	2 cut(s)	220, 757
BsuRI	GGCC	2 cut(s)	146, 844
BtsCI	GGATG	2 cut(s)	790, 862
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	5 cut(s)	55, 135, 378, 509, 630
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	145, 710
CsiI	ACCWGGT	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	76, 770
CviAII	CATG	7 cut(s)	54, 175, 230, 293, 304, 325, 377
CviJI	RGCY	9 cut(s)	73, 146, 251, 260, 270, 302, 422, 632, 844
CviKI_1	RGCY	9 cut(s)	73, 146, 251, 260, 270, 302, 422, 632, 844
CviQI	GTAC	2 cut(s)	76, 770
DdeI	CTNAG	4 cut(s)	224, 246, 372, 434
DpnI	GATC	6 cut(s)	222, 291, 384, 585, 612, 759
DpnII	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
Eco147I	AGGCCT	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	159, 409
FaeI	CATG	7 cut(s)	57, 178, 233, 296, 307, 328, 380
FaqI	GGGAC	3 cut(s)	401, 442, 562
FatI	CATG	7 cut(s)	53, 174, 229, 292, 303, 324, 376
FauNDI	CATATG	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	2 cut(s)	261, 468
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	2 cut(s)	261, 468
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	261, 468
GsaI	CCCAGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	146, 844
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	57, 178, 233, 296, 307, 328, 380
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	2 cut(s)	540, 564
HindII	GTYRAC	2 cut(s)	540, 564
HinfI	GANTC	2 cut(s)	455, 805
HphI	GGTGA	2 cut(s)	101, 175
Hpy166II	GTNNAC	2 cut(s)	540, 564
Hpy188I	TCNGA	6 cut(s)	227, 342, 435, 496, 592, 615
Hpy188III	TCNNGA	7 cut(s)	254, 293, 350, 389, 403, 452, 575
Hpy8I	GTNNAC	2 cut(s)	540, 564
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	246, 667, 694, 775
HpyCH4V	TGCA	6 cut(s)	106, 263, 281, 321, 511, 628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 143, 257, 308, 428
HpyF3I	CTNAG	4 cut(s)	224, 246, 372, 434
Hsp92II	CATG	7 cut(s)	57, 178, 233, 296, 307, 328, 380
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	3 cut(s)	115, 330, 781
MabI	ACCWGGT	1 cut(s)	409
MaeI	CTAG	1 cut(s)	654
MalI	GATC	6 cut(s)	222, 291, 384, 585, 612, 759
MbiI	CCGCTC	2 cut(s)	443, 470
MboI	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
MboII	GAAGA	6 cut(s)	43, 377, 509, 608, 745, 752
MflI	RGATCY	2 cut(s)	220, 757
MhlI	GDGCHC	2 cut(s)	169, 357
MluCI	AATT	3 cut(s)	97, 396, 479
MlyI	GAGTC	2 cut(s)	464, 814
MnlI	CCTC	7 cut(s)	12, 15, 122, 158, 281, 795, 844
MseI	TTAA	2 cut(s)	690, 862
MspR9I	CCNGG	2 cut(s)	161, 411
MvaI	CCWGG	2 cut(s)	161, 411
MvnI	CGCG	1 cut(s)	829
MwoI	GCNNNNNNNGC	5 cut(s)	22, 143, 257, 308, 428
NdeI	CATATG	1 cut(s)	513
NdeII	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
NlaIII	CATG	7 cut(s)	57, 178, 233, 296, 307, 328, 380
NlaIV	GGNNCC	2 cut(s)	166, 711
NspI	RCATGY	3 cut(s)	57, 233, 380
PaeI	GCATGC	2 cut(s)	57, 380
PagI	TCATGA	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	844
PciI	ACATGT	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	262, 469
PleI	GAGTC	2 cut(s)	463, 813
PpsI	GAGTC	2 cut(s)	463, 813
PscI	ACATGT	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	159, 409
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	2 cut(s)	159, 409
PspN4I	GGNNCC	2 cut(s)	166, 711
PspPI	GGNCC	2 cut(s)	145, 710
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	220, 757
RsaI	GTAC	2 cut(s)	77, 771
RsaNI	GTAC	2 cut(s)	76, 770
SalI	GTCGAC	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	690, 862
SatI	GCNGC	2 cut(s)	261, 468
Sau3AI	GATC	6 cut(s)	220, 289, 382, 583, 610, 757
Sau96I	GGNCC	2 cut(s)	145, 710
SchI	GAGTC	2 cut(s)	464, 814
ScrFI	CCNGG	2 cut(s)	161, 411
SduI	GDGCHC	2 cut(s)	169, 357
SetI	ASST	7 cut(s)	84, 114, 262, 287, 415, 424, 827
SexAI	ACCWGGT	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	115, 330, 781
SfcI	CTRYAG	2 cut(s)	261, 633
SinI	GGWCC	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	401, 452
SmoI	CTYRAG	2 cut(s)	401, 452
SphI	GCATGC	2 cut(s)	57, 380
Sse9I	AATT	3 cut(s)	97, 396, 479
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	6 cut(s)	40, 441, 468, 817, 829, 854
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	2 cut(s)	159, 409
TaqI	TCGA	2 cut(s)	563, 849
TasI	AATT	3 cut(s)	97, 396, 479
TatI	WGTACW	1 cut(s)	769
TauI	GCSGC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	690, 862
Tru9I	TTAA	2 cut(s)	690, 862
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	609, 752
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	97, 396
XceI	RCATGY	3 cut(s)	57, 233, 380
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.