Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003163

Physical Location & Seq

Genomic Coordinates Reverse (-)

9302427 .. 9305419

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10500.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGAGTAAAGAAGCAGAAGCGTCATAGGAAGATAGTGCGGTTTTATACAGCATGTTATGGGTTCAGGCAGCCATATAAGGTGCTCTGCGATGTCACTTTTGTGCATCATCTTGTCACCAATCGCATCACCCCTGCTGACAAGGCCCTTTCTAATATCCTTGGTGCCCCTGTCACCCTATTCACTACCAAATGTGCTGTTGCTGAGTTGAAGATGCATGGTCCAAGCCTTGGTCCCTCCCATTCCGAGTCTCTTGAAGCTGCCAGTAGCCTCATTACTGCAAGGTGTGACCATGAGGAAGCTATGAGTGCTGATGATTGCATCATGGATGTTATTGGGAAAAATAATTCCGAGCACTTCTTTGTTGCTACTCAGCAGGCCGATCTTCGTAAGAGAATTCTCAAGATTCCAGGTGTCCCTGTTGTATACGCTCTGAGAACTGCTCTTTTGCTTGAGGCACCATCTGTTGCCCAACGCCAGTTTGTGAAAACTTCTGAAGAACAACGTTTGCACATGACTCACTTGGAATTTAAGATGTTGGAAAAGAGGGCAAAGAATATGTTGGAAAAGGATTCCTCTGATGAAGATGTTGGTTCTGGAGATCAGAACTTGGAAGTGCAGGCTGTTGAAAAGAACCGCACTGCTAGGAGAGATTTGGGTGTGAAAGATAAACCTCAGTTTAAGAGAAAGAAGGCAAAGGGTCCAAACCCACTTTCATGTAAGCCGAAAAAGACTTCGAAAAGACCGGATTCAGGGAAGGAAAGGAATAATGAAGATGCCAGTGTGAGGAGTAGAAAGAAGCGGAAGAGATCACGGAAAGGCAAAAGCCCTGTGAAAGCAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fcf1

Protein Analysis

283

Amino Acids

31.79

Weight (kDa)

9.97

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fcf1	PF04900	53 - 152	1.4e-24	Fcf1
UTP23_sensor	PF24779	227 - 244	6.6e-06	UTP23 sensor motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34570
fragaria_vesca	FvH4_2g10500 FvH4_2g10500 FvH4_2g10500
malus_domestica	MD08G1181300.v1.1 MD09G1264600.v1.1 MD16G1246600.v1.1
prunus_persica	Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1 Prupe.5G024800_v2.0.a1
pyrus_communis	pycom09g17820 pycom17g26110
rosa_chinensis	RchiOBHm_Chr6g0267991
rosa_laevigata	RLG00000013946 RLG00000013947 RLG00000013950 RLG00000013959 RLG00000013963 RLG00000013990
rosa_multiflora	Rmu_sc0008552.1_g000010 Rmu_sc0014221.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234740 Rroxscaffold_3G00236090 Rroxscaffold_7G00200230
rosa_rugosa	Rorug06G0036700 Rorug06G0036800
rosa_samantha	Rh6AG158000 Rh6BG160400 Rh6BG161300 Rh6CG156800 Rh6DG145900 Rh6DG146600
rosa_wichuraiana	Rw0G021310 Rw6G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 457
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	3 cut(s)	40, 637, 802
AclI	AACGTT	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	396, 527
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	230, 752, 786
AgsI	TTSAA	3 cut(s)	211, 257, 629
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	260, 302
AluI	AGCT	2 cut(s)	260, 302
Alw21I	GWGCWC	2 cut(s)	87, 357
Alw26I	GTCTC	1 cut(s)	255
AoxI	GGCC	2 cut(s)	144, 378
ApeKI	GCWGC	2 cut(s)	70, 260
ApoI	RAATTY	2 cut(s)	396, 527
AspS9I	GGNCC	4 cut(s)	145, 221, 233, 701
AsuHPI	GGTGA	3 cut(s)	109, 121, 166
AsuII	TTCGAA	1 cut(s)	737
AvaII	GGWCC	3 cut(s)	221, 233, 701
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	164, 457
Bbv12I	GWGCWC	2 cut(s)	87, 357
BbvI	GCAGC	2 cut(s)	82, 247
BccI	CCATC	2 cut(s)	469, 836
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	645
BisI	GCNGC	2 cut(s)	71, 261
BlsI	GCNGC	2 cut(s)	72, 262
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	3 cut(s)	221, 233, 701
BmgT120I	GGNCC	4 cut(s)	145, 221, 233, 701
BmiI	GGNNCC	4 cut(s)	166, 235, 459, 702
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	5 cut(s)	115, 135, 204, 330, 766
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BpmI	CTGGAG	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	386, 473
BsaJI	CCNNGG	2 cut(s)	160, 229
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 752, 786
Bse1I	ACTGG	3 cut(s)	264, 478, 780
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	160, 229
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	230, 752, 786
BseMII	CTCAG	4 cut(s)	195, 386, 425, 689
BseNI	ACTGG	3 cut(s)	264, 478, 780
BseRI	GAGGAG	1 cut(s)	802
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	82, 247
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	2 cut(s)	146, 380
BshNI	GGYRCC	2 cut(s)	164, 457
BsiHKAI	GWGCWC	2 cut(s)	87, 357
BsiSI	CCGG	1 cut(s)	746
BslFI	GGGAC	2 cut(s)	219, 401
BslI	CCNNNNNNNGG	3 cut(s)	230, 752, 786
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	219, 401
BsnI	GGCC	2 cut(s)	146, 380
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	87, 169, 357
Bsp143I	GATC	3 cut(s)	382, 601, 809
BspACI	CCGC	3 cut(s)	40, 637, 802
BspANI	GGCC	2 cut(s)	146, 380
BspCNI	CTCAG	4 cut(s)	196, 385, 426, 688
BspLI	GGNNCC	4 cut(s)	166, 235, 459, 702
BspT104I	TTCGAA	1 cut(s)	737
BspT107I	GGYRCC	2 cut(s)	164, 457
BsrI	ACTGG	3 cut(s)	264, 478, 780
BssECI	CCNNGG	2 cut(s)	160, 229
BssMI	GATC	3 cut(s)	382, 601, 809
BssNAI	GTATAC	1 cut(s)	427
BssT1I	CCWWGG	2 cut(s)	160, 229
Bst1107I	GTATAC	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	378, 621
BstDEI	CTNAG	4 cut(s)	204, 372, 434, 675
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	385, 604, 812
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	382, 601, 809
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 308
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	82, 247
BstZ17I	GTATAC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	146, 380
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	639, 787
Cac8I	GCNNGC	2 cut(s)	378, 621
Cfr13I	GGNCC	4 cut(s)	145, 221, 233, 701
CseI	GACGC	1 cut(s)	11
CviAII	CATG	6 cut(s)	54, 218, 293, 325, 514, 717
DdeI	CTNAG	4 cut(s)	204, 372, 434, 675
DpnI	GATC	3 cut(s)	384, 603, 811
DpnII	GATC	3 cut(s)	382, 601, 809
Eam1104I	CTCTTC	1 cut(s)	800
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	160, 229
Eco47I	GGWCC	3 cut(s)	221, 233, 701
Eco57I	CTGAAG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	160, 229
EcoT22I	ATGCAT	1 cut(s)	219
ErhI	CCWWGG	2 cut(s)	160, 229
FaeI	CATG	6 cut(s)	57, 221, 296, 328, 517, 720
FaqI	GGGAC	2 cut(s)	219, 401
FatI	CATG	6 cut(s)	53, 217, 292, 324, 513, 716
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	71, 261
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	71, 261
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	2 cut(s)	71, 261
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	146, 380
HapII	CCGG	1 cut(s)	746
HgaI	GACGC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	57, 221, 296, 328, 517, 720
HinfI	GANTC	5 cut(s)	248, 406, 517, 572, 749
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	109, 121, 166
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	6 cut(s)	247, 352, 435, 496, 580, 606
Hpy188III	TCNNGA	3 cut(s)	254, 403, 597
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	685, 751
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	6 cut(s)	106, 217, 281, 321, 511, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 308
HpyF3I	CTNAG	4 cut(s)	204, 372, 434, 675
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	6 cut(s)	57, 221, 296, 328, 517, 720
Kzo9I	GATC	3 cut(s)	382, 601, 809
Lsp1109I	GCAGC	2 cut(s)	82, 247
LweI	GCATC	5 cut(s)	115, 135, 204, 330, 766
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	4 cut(s)	94, 115, 172, 287
MalI	GATC	3 cut(s)	384, 603, 811
MboI	GATC	3 cut(s)	382, 601, 809
MboII	GAAGA	7 cut(s)	43, 223, 377, 509, 596, 785, 817
MhlI	GDGCHC	3 cut(s)	87, 169, 357
MluCI	AATT	3 cut(s)	346, 396, 527
MlyI	GAGTC	2 cut(s)	257, 511
MmeI	TCCRAC	2 cut(s)	519, 543
MnlI	CCTC	8 cut(s)	247, 281, 289, 448, 540, 586, 684, 780
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	3 cut(s)	531, 681, 847
MslI	CAYNNNNRTG	2 cut(s)	101, 715
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	143, 308
NdeII	GATC	3 cut(s)	382, 601, 809
NlaIII	CATG	6 cut(s)	57, 221, 296, 328, 517, 720
NlaIV	GGNNCC	4 cut(s)	166, 235, 459, 702
NmuCI	GTSAC	4 cut(s)	94, 115, 172, 287
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	1 cut(s)	57
NspV	TTCGAA	1 cut(s)	737
OliI	CACNNNNGTG	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	406, 572, 749
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	72, 262
PleI	GAGTC	2 cut(s)	256, 511
PpsI	GAGTC	2 cut(s)	256, 511
Psp1406I	AACGTT	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	166, 235, 459, 702
PspPI	GGNCC	4 cut(s)	145, 221, 233, 701
RseI	CAYNNNNRTG	2 cut(s)	101, 715
SaqAI	TTAA	3 cut(s)	531, 681, 847
SatI	GCNGC	2 cut(s)	71, 261
Sau3AI	GATC	3 cut(s)	382, 601, 809
Sau96I	GGNCC	4 cut(s)	145, 221, 233, 701
SchI	GAGTC	2 cut(s)	257, 511
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	3 cut(s)	87, 169, 357
SetI	ASST	7 cut(s)	84, 262, 287, 304, 415, 508, 676
SfaNI	GCATC	5 cut(s)	115, 135, 204, 330, 766
SfuI	TTCGAA	1 cut(s)	737
SinI	GGWCC	3 cut(s)	221, 233, 701
SmiMI	CAYNNNNRTG	2 cut(s)	101, 715
SmlI	CTYRAG	2 cut(s)	401, 452
SmoI	CTYRAG	2 cut(s)	401, 452
Sse9I	AATT	3 cut(s)	346, 396, 527
SsiI	CCGC	3 cut(s)	40, 637, 802
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	160, 229
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	737
TasI	AATT	3 cut(s)	346, 396, 527
TfiI	GAWTC	3 cut(s)	406, 572, 749
Tru1I	TTAA	3 cut(s)	531, 681, 847
Tru9I	TTAA	3 cut(s)	531, 681, 847
TscAI	CASTG	2 cut(s)	646, 787
TseFI	GTSAC	4 cut(s)	94, 115, 172, 287
TseI	GCWGC	2 cut(s)	70, 260
Tsp45I	GTSAC	4 cut(s)	94, 115, 172, 287
TspDTI	ATGAA	3 cut(s)	597, 705, 786
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	2 cut(s)	646, 787
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	221, 233, 701
XapI	RAATTY	2 cut(s)	396, 527
XceI	RCATGY	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	645
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.