Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

14578444 .. 14581856

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTACTTGCCGAGGTTCCAAAGCTTGCCTCTGCTGCTGAGTACTTCTTCAAAAGGGGTGTGCAAGGAAAACAGTTTCGTTCAACTATTTTGCTGCTGATGGCGACAGCTCTGAATGTACGAGTTCCAGAAGCATTGATTGGGGAATCAACAGATATAGTCACATCAGAATTACGCGTAAGGCAACGGGGTATTGCTGAAATCACTGAAATGATACACGTCGCAAGTCTACTGCACGATGATGTCTTGGATGATGCCGATACAAGGCGTGGTGTTGGTTCCTTAAATGTTGTAATGGGTAACAAGATGTCGGTATTAGCAGGAGACTTCTTGCTCTCCCGGGCTTGTGGGGCTCTCGCTGCTTTAAAGAACACAGAGGTTGTAGCATTACTTGCAACTGCTGTAGAACATCTTGTTACCGGTGAAACCATGGAGATAACTAGTTCAACCGAGCAGCGTTATAGTATGGACTACTACATGCAGAAGACATATTATAAGACAGCATCGCTAATCTCTAACAGCTGCAAAGCTGTTGCCGTTCTCACTGGACAAACAGCAGAAGTTGCCGTGTTAGCTTTTGAGTATGGGAGGAATCTGGGTTTAGCATTCCAATTAATAGACGACATTCTTGATTTCACGGGCACATCTGCCTCTCTCGGAAAGGGATCGTTGTCAGATATTCGCCATGGAGTCATAACAGCCCCAATCCTCTTTGCCATGGAAGAGTTTCCTCAACTACGCGAAGTTGTTGATCAAGTTGAAAAAGATCCTAGGAATGTTGACATTGCTTTAGAGTATCTTGGGAAGAGCAAGGGAATACAGAGGGCAAGAGAATTAGCCATGGAACATGCGAATCTAGCAGCAGCTGCAATCGGGTCTCTACCTGAAACAGACAATGAAGATGTCAAAAGATCGAGGCGGGCACTTATTGACTTGACCCATAGAGTCATCACCAGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

321

Amino Acids

35.05

Weight (kDa)

5.63

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	8 - 264	9.4e-65	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AccI	GTMKAC	1 cut(s)	229
AccII	CGCG	2 cut(s)	177, 741
AciI	CCGC	1 cut(s)	919
AclWI	GGATC	2 cut(s)	673, 761
AfaI	GTAC	3 cut(s)	6, 44, 120
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflIII	ACRYGT	2 cut(s)	175, 217
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	52, 84, 447, 761
AhlI	ACTAGT	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	6 cut(s)	25, 110, 522, 530, 575, 866
AluI	AGCT	6 cut(s)	25, 110, 522, 530, 575, 866
Alw26I	GTCTC	2 cut(s)	318, 882
AlwI	GGATC	2 cut(s)	673, 761
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	339
ApeKI	GCWGC	8 cut(s)	35, 94, 359, 454, 522, 860, 863, 866
AseI	ATTAAT	1 cut(s)	614
AsiGI	ACCGGT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	726
AspA2I	CCTAGG	1 cut(s)	770
AsuC2I	CCSGG	2 cut(s)	340, 341
AsuHPI	GGTGA	2 cut(s)	434, 943
AvaI	CYCGRG	1 cut(s)	339
AvrII	CCTAGG	1 cut(s)	770
BaeGI	GKGCMC	2 cut(s)	644, 925
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	8 cut(s)	22, 81, 346, 466, 509, 853, 872, 875
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	2 cut(s)	521, 551
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	340, 341
BcoDI	GTCTC	2 cut(s)	318, 882
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	3 cut(s)	441, 771, 857
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	8 cut(s)	36, 95, 360, 455, 523, 861, 864, 867
BlnI	CCTAGG	1 cut(s)	770
BlsI	GCNGC	8 cut(s)	37, 96, 361, 456, 524, 862, 865, 868
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	340, 341
BmeT110I	CYCGRG	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	18, 280
BmrFI	CCNGG	2 cut(s)	340, 341
BmsI	GCATC	2 cut(s)	244, 512
BpiI	GAAGAC	1 cut(s)	491
BpuMI	CCSGG	2 cut(s)	340, 341
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	7 cut(s)	12, 339, 429, 685, 717, 770, 840
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	783
BseDI	CCNNGG	7 cut(s)	12, 339, 429, 685, 717, 770, 840
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	2 cut(s)	644, 925
BseXI	GCAGC	8 cut(s)	22, 81, 346, 466, 509, 853, 872, 875
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	177, 741
BshTI	ACCGGT	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	340, 420
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	2 cut(s)	318, 882
BsmI	GAATGC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	3 cut(s)	355, 644, 925
Bsp143I	GATC	4 cut(s)	665, 751, 766, 911
Bsp19I	CCATGG	4 cut(s)	429, 685, 717, 840
BspACI	CCGC	1 cut(s)	919
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	177, 741
BspLI	GGNNCC	2 cut(s)	18, 280
BspPI	GGATC	2 cut(s)	673, 761
BspQI	GCTCTTC	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	882
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	7 cut(s)	12, 339, 429, 685, 717, 770, 840
BssMI	GATC	4 cut(s)	665, 751, 766, 911
BssT1I	CCWWGG	5 cut(s)	429, 685, 717, 770, 840
Bst4CI	ACNGT	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	717, 800
BstAPI	GCANNNNNTGC	3 cut(s)	392, 563, 866
BstC8I	GCNNGC	2 cut(s)	27, 921
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	4 cut(s)	429, 685, 717, 840
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	2 cut(s)	177, 741
BstKTI	GATC	4 cut(s)	668, 754, 769, 914
BstMAI	GTCTC	2 cut(s)	318, 882
BstMBI	GATC	4 cut(s)	665, 751, 766, 911
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 350, 359, 392, 563, 572, 857, 866
BstNSI	RCATGY	2 cut(s)	481, 851
BstSCI	CCNGG	2 cut(s)	338, 339
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	2 cut(s)	644, 925
BstUI	CGCG	2 cut(s)	177, 741
BstV1I	GCAGC	8 cut(s)	22, 81, 346, 466, 509, 853, 872, 875
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BtgI	CCRYGG	4 cut(s)	429, 685, 717, 840
BtgZI	GCGATG	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	204, 543
Cac8I	GCNNGC	2 cut(s)	27, 921
CaiI	CAGNNNCTG	1 cut(s)	866
Cfr10I	RCCGGY	1 cut(s)	419
Cfr9I	CCCGGG	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	5, 43, 119
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	6 cut(s)	430, 478, 686, 718, 841, 848
CviQI	GTAC	3 cut(s)	5, 43, 119
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	4 cut(s)	667, 753, 768, 913
DpnII	GATC	4 cut(s)	665, 751, 766, 911
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	717, 800
EarI	CTCTTC	2 cut(s)	717, 800
Eco130I	CCWWGG	5 cut(s)	429, 685, 717, 770, 840
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	882
Eco88I	CYCGRG	1 cut(s)	339
EcoT14I	CCWWGG	5 cut(s)	429, 685, 717, 770, 840
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	5 cut(s)	429, 685, 717, 770, 840
FaeI	CATG	6 cut(s)	433, 481, 689, 721, 844, 851
FatI	CATG	6 cut(s)	429, 477, 685, 717, 840, 847
FauI	CCCGC	1 cut(s)	912
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	8 cut(s)	36, 95, 360, 455, 523, 861, 864, 867
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	8 cut(s)	36, 95, 360, 455, 523, 861, 864, 867
FspBI	CTAG	3 cut(s)	441, 771, 857
GluI	GCNGC	8 cut(s)	36, 95, 360, 455, 523, 861, 864, 867
HapII	CCGG	2 cut(s)	340, 420
Hin1II	CATG	6 cut(s)	433, 481, 689, 721, 844, 851
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	5 cut(s)	146, 592, 690, 853, 945
HpaII	CCGG	2 cut(s)	340, 420
HphI	GGTGA	2 cut(s)	434, 943
Hpy166II	GTNNAC	2 cut(s)	230, 781
Hpy188I	TCNGA	4 cut(s)	114, 169, 659, 676
Hpy188III	TCNNGA	2 cut(s)	128, 629
Hpy8I	GTNNAC	2 cut(s)	230, 781
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	6 cut(s)	64, 235, 395, 481, 525, 869
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 350, 359, 392, 563, 572, 857, 866
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	6 cut(s)	433, 481, 689, 721, 844, 851
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	665, 751, 766, 911
LguI	GCTCTTC	1 cut(s)	800
LpnPI	CCDG	7 cut(s)	141, 306, 353, 433, 531, 581, 897
Lsp1109I	GCAGC	8 cut(s)	22, 81, 346, 466, 509, 853, 872, 875
LweI	GCATC	2 cut(s)	244, 512
MaeI	CTAG	3 cut(s)	441, 771, 857
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	160, 299, 415
MalI	GATC	4 cut(s)	667, 753, 768, 913
MboI	GATC	4 cut(s)	665, 751, 766, 911
MboII	GAAGA	5 cut(s)	40, 496, 734, 817, 911
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	3 cut(s)	355, 644, 925
MluCI	AATT	3 cut(s)	170, 611, 833
MluI	ACGCGT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	699, 954
MnlI	CCTC	9 cut(s)	7, 40, 370, 582, 661, 719, 741, 816, 909
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	3 cut(s)	284, 365, 614
MslI	CAYNNNNRTG	2 cut(s)	209, 240
MspA1I	CMGCKG	2 cut(s)	522, 866
MspI	CCGG	2 cut(s)	340, 420
MspR9I	CCNGG	2 cut(s)	340, 341
Mva1269I	GAATGC	1 cut(s)	605
MvnI	CGCG	2 cut(s)	177, 741
MwoI	GCNNNNNNNGC	8 cut(s)	35, 350, 359, 392, 563, 572, 857, 866
NciI	CCSGG	2 cut(s)	340, 341
NcoI	CCATGG	4 cut(s)	429, 685, 717, 840
NdeII	GATC	4 cut(s)	665, 751, 766, 911
NlaIII	CATG	6 cut(s)	433, 481, 689, 721, 844, 851
NlaIV	GGNNCC	2 cut(s)	18, 280
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	2 cut(s)	481, 851
PciSI	GCTCTTC	1 cut(s)	800
PctI	GAATGC	1 cut(s)	605
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	146, 592, 853
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	8 cut(s)	37, 96, 361, 456, 524, 862, 865, 868
PleI	GAGTC	2 cut(s)	698, 953
PpsI	GAGTC	2 cut(s)	698, 953
PshBI	ATTAAT	1 cut(s)	614
PsiI	TTATAA	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	18, 280
PstNI	CAGNNNCTG	1 cut(s)	866
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	2 cut(s)	522, 866
RsaI	GTAC	3 cut(s)	6, 44, 120
RsaNI	GTAC	3 cut(s)	5, 43, 119
RseI	CAYNNNNRTG	2 cut(s)	209, 240
SapI	GCTCTTC	1 cut(s)	800
SaqAI	TTAA	3 cut(s)	284, 365, 614
SatI	GCNGC	8 cut(s)	36, 95, 360, 455, 523, 861, 864, 867
Sau3AI	GATC	4 cut(s)	665, 751, 766, 911
ScaI	AGTACT	1 cut(s)	44
SchI	GAGTC	2 cut(s)	699, 954
ScrFI	CCNGG	2 cut(s)	340, 341
SduI	GDGCHC	3 cut(s)	355, 644, 925
SfaNI	GCATC	2 cut(s)	244, 512
SfcI	CTRYAG	1 cut(s)	402
SmaI	CCCGGG	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	209, 240
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	3 cut(s)	170, 611, 833
SsiI	CCGC	1 cut(s)	919
SspMI	CTAG	3 cut(s)	441, 771, 857
StyD4I	CCNGG	2 cut(s)	338, 339
StyI	CCWWGG	5 cut(s)	429, 685, 717, 770, 840
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	914
TasI	AATT	3 cut(s)	170, 611, 833
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	146, 592, 853
Tru1I	TTAA	3 cut(s)	284, 365, 614
Tru9I	TTAA	3 cut(s)	284, 365, 614
TscAI	CASTG	2 cut(s)	211, 550
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	8 cut(s)	35, 94, 359, 454, 522, 860, 863, 866
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	912
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	2 cut(s)	211, 550
VspI	ATTAAT	1 cut(s)	614
XceI	RCATGY	2 cut(s)	481, 851
XmaI	CCCGGG	1 cut(s)	339
XmaJI	CCTAGG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	3 cut(s)	441, 771, 857
ZrmI	AGTACT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.