Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10265444 .. 10266509

Gene Structure 1066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCATATTACATGGAAAAAACATACTACAAGAATGCATCATCGATTTCAAATTCTTGCAAGGCACTGGCCATTCTTGCTGGGCATACAACACAAGTTGCTAAGATGGCTTTTGACTATGGAAAGAATCTGGGATTGGCGTTTCAATTGATAGACGATGTTCTTGATTTTTCGGGCACATCATCAACACCTCTTGGAAAGGGCTCATTATCTGACATCCGTCATGGCATTATCACTGCTCCAATATTGTTTGCCCTGGAAGAGTTCCCTCAGTTGGGTGCAGTTGTTGAAAAAGGATTTGACAATCCTGCAAATATTGAGATCGCTCTTGACTACCTTGCCAAGACTAATGGTATACAGAGGACAAGGGATCTAGCAAGAAAGCATGCAAACCTTGCTGCAAAGGCAATCAAATCTCTGCCTGAGAGTGAGGATGAAAGCATAAGAAGATCAAGGATGGCGCTCCGAGATCTCACCAACAATCCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

163

Amino Acids

17.81

Weight (kDa)

7.83

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	2 - 111	1.2e-23	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	2 cut(s)	274, 275
AgsI	TTSAA	3 cut(s)	51, 146, 290
AjnI	CCWGG	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	100, 451
BciT130I	CCWGG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	464
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	47
BoxI	GACNNNNGTC	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 275
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	216, 439, 462
BseLI	CCNNNNNNNGG	2 cut(s)	274, 275
BseMII	CTCAG	2 cut(s)	284, 414
BseNI	ACTGG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	274, 275
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	179, 206
Bsp143I	GATC	4 cut(s)	321, 370, 449, 469
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	283, 415
BspDI	ATCGAT	1 cut(s)	44
BspPI	GGATC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	321, 370, 449, 469
BssNAI	GTATAC	1 cut(s)	356
Bst1107I	GTATAC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	102, 270, 423
BstF5I	GGATG	3 cut(s)	216, 439, 462
BstH2I	RGCGCY	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	4 cut(s)	324, 373, 452, 472
BstMBI	GATC	4 cut(s)	321, 370, 449, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 107, 395, 404
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	370, 469
BstYI	RGATCY	2 cut(s)	370, 469
BstZ17I	GTATAC	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	216, 439, 462
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	65, 234
Cac8I	GCNNGC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	463
ClaI	ATCGAT	1 cut(s)	44
CviAII	CATG	3 cut(s)	13, 224, 386
CviJI	RGCY	3 cut(s)	71, 110, 204
CviKI_1	RGCY	3 cut(s)	71, 110, 204
DdeI	CTNAG	3 cut(s)	102, 270, 423
DpnI	GATC	4 cut(s)	323, 372, 451, 471
DpnII	GATC	4 cut(s)	321, 370, 449, 469
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	206
FaeI	CATG	3 cut(s)	16, 227, 389
FatI	CATG	3 cut(s)	12, 223, 385
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	3 cut(s)	203, 446, 469
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	16, 227, 389
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	214, 467
Hpy188III	TCNNGA	2 cut(s)	164, 329
Hpy8I	GTNNAC	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	38, 60, 281, 311, 389, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 107, 395, 404
HpyF3I	CTNAG	3 cut(s)	102, 270, 423
Hsp92II	CATG	3 cut(s)	16, 227, 389
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	4 cut(s)	321, 370, 449, 469
LmnI	GCTCC	2 cut(s)	244, 468
LpnPI	CCDG	7 cut(s)	53, 66, 116, 242, 269, 321, 435
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	374
MalI	GATC	4 cut(s)	323, 372, 451, 471
MboI	GATC	4 cut(s)	321, 370, 449, 469
MboII	GAAGA	2 cut(s)	272, 459
MfeI	CAATTG	1 cut(s)	146
MflI	RGATCY	2 cut(s)	370, 469
MhlI	GDGCHC	2 cut(s)	179, 206
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	2 cut(s)	52, 146
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	4 cut(s)	201, 279, 354, 424
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	77, 107, 395, 404
NdeII	GATC	4 cut(s)	321, 370, 449, 469
NlaIII	CATG	3 cut(s)	16, 227, 389
NsiI	ATGCAT	1 cut(s)	40
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	400
PshAI	GACNNNNGTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	255
PsuI	RGATCY	2 cut(s)	370, 469
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	4 cut(s)	321, 370, 449, 469
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	179, 206
SetI	ASST	3 cut(s)	193, 339, 396
SfaNI	GCATC	1 cut(s)	47
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	52, 146
SspI	AATATT	2 cut(s)	246, 316
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	255
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	52, 146
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	2 cut(s)	72, 241
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	72, 241
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.