Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013610.1

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

27293 .. 27769

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013610.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgttgaggccaaatgtttctcgtcaaggtaagagaggcgccggcgacgttgatgagtccttccgtgactctaaacggcctcgtccggacctccctgggacagatcaacgtgagaaacttgtacgagtagccgacatgcccaagtggagtcgaaaagcctttgatggaatccatgagctgaacatggtggatagtcttgtttatgatactgctctgtttgagaccgacaacatcctcctgagtgctccaactagacccggggaaggtaatgttgccatcctcaccattctccagcagttcggtataaatatggatagatctgatgatcataatgtaaatcacaaagggtacaaagtagtatatttggcttctgctacatctattgttcctaaggtggtggcacatttgagtaaaagattgaggtcttttggtgcaaaagtgatagggatagatttaggtgtaaggaagctctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

158

Amino Acids

17.68

Weight (kDa)

9.73

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	123, 350
AfiI	CCNNNNNNNGG	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	178, 469
AluI	AGCT	2 cut(s)	178, 469
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	2 cut(s)	8, 77
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	2 cut(s)	258, 259
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	88
AxyI	CCTNAGG	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	247
BccI	CCATC	2 cut(s)	158, 284
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	2 cut(s)	258, 259
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	42
BglII	AGATCT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	96, 258, 259
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	3 cut(s)	96, 258, 259
BpmI	CTGGAG	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	258, 259
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	94, 95, 257, 258
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	4 cut(s)	94, 95, 257, 258
BseGI	GGATG	2 cut(s)	231, 276
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	10, 79
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	42, 86, 258
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	10, 79
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	103, 317, 325
BspANI	GGCC	2 cut(s)	10, 79
BspCNI	CTCAG	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	94, 95, 257, 258
BssMI	GATC	3 cut(s)	103, 317, 325
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	239, 390
BstF5I	GGATG	2 cut(s)	231, 276
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	106, 320, 328
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	103, 317, 325
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	94, 256, 257
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	10, 79
BtsCI	GGATG	2 cut(s)	231, 276
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	88
Cfr9I	CCCGGG	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	122, 349
CviAII	CATG	3 cut(s)	136, 173, 184
CviJI	RGCY	7 cut(s)	10, 79, 131, 158, 178, 368, 469
CviKI_1	RGCY	7 cut(s)	10, 79, 131, 158, 178, 368, 469
CviQI	GTAC	2 cut(s)	122, 349
DdeI	CTNAG	2 cut(s)	239, 390
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	105, 319, 327
DpnII	GATC	3 cut(s)	103, 317, 325
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	94
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	3 cut(s)	139, 176, 187
FaiI	YATR	8 cut(s)	137, 174, 185, 204, 305, 311, 330, 361
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	135, 172, 183
FbaI	TGATCA	1 cut(s)	325
FokI	GGATG	2 cut(s)	218, 263
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	10, 79
HapII	CCGG	3 cut(s)	42, 86, 258
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	139, 176, 187
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	56, 68, 148, 168
HpaII	CCGG	3 cut(s)	42, 86, 258
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	86, 238
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	70, 257
HpyCH4IV	ACGT	2 cut(s)	48, 109
HpyCH4V	TGCA	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	239, 390
HpySE526I	ACGT	2 cut(s)	48, 109
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	139, 176, 187
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	103, 317, 325
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	8 cut(s)	55, 81, 99, 108, 251, 271, 305, 457
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	48, 109
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	105, 319, 327
MboI	GATC	3 cut(s)	103, 317, 325
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	247
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	3 cut(s)	62, 65, 157
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	6 cut(s)	29, 90, 101, 245, 290, 414
MreI	CGCCGGCG	1 cut(s)	41
MroI	TCCGGA	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	41
MspI	CCGG	3 cut(s)	42, 86, 258
MspR9I	CCNGG	3 cut(s)	96, 258, 259
MvaI	CCWGG	1 cut(s)	96
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	2 cut(s)	258, 259
NdeII	GATC	3 cut(s)	103, 317, 325
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	3 cut(s)	139, 176, 187
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	139
PasI	CCCWGGG	1 cut(s)	95
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	168
PleI	GAGTC	3 cut(s)	62, 64, 156
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	62, 64, 156
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	2 cut(s)	123, 350
RsaNI	GTAC	2 cut(s)	122, 349
Sau3AI	GATC	3 cut(s)	103, 317, 325
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	3 cut(s)	62, 65, 157
ScrFI	CCNGG	3 cut(s)	96, 258, 259
SduI	GDGCHC	1 cut(s)	247
SfoI	GGCGCC	1 cut(s)	40
SgrAI	CRCCGGYG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	88
SmaI	CCCGGG	1 cut(s)	259
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	94, 256, 257
TaiI	ACGT	2 cut(s)	51, 112
TaqI	TCGA	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	139
XmaI	CCCGGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.