Rh5CG125400

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
10423596 .. 10464598
41003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG125400.1

Sequence Viewer

Length: 972 bp
ATGGCCACCGTGCCAATAGATCCAGCCGATACAGTCAACCGCGACAATTCTCATGGTAGCAAGGGGGGCAAGGCCAAAAGACTCAAGTGGTTGGACATTGCTATGGAGGATCCCTCTGCGGCTTCTGAAGGCTCCAGTTCCTCTGCCATGGCCGCCGTGCATATTGATCCAGCCGATTCAATCAACCGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCCGCCGTACATATTGATCCAGCTGATTCAATCAACCGCGACAATTCTCATGGTATGCCAAAGGAAGCCATGGCCACCGTGCATATCGATCCAGCTGATTCAATCAACCACGACAATTCTCATGGTAGCAAGGGTGGCAAGGCCAGAAGACTCAAGGGGTCGAACATTGCTATGGAAGGTCCCTGGGCGGCTTATAAAGGGCCCATTTCTTCTGGTAGCCAGGGTGGCAAGGCCAAGAGACTCAAGCTGAAACTCCTTGCTGTTGAGACTTATGATGGCCCCAGTTCTCTTGGTAATCTTTTGATTTTTGTTCTAAGTTTGGTGACGCATTTGTTGAATCTAAGGCATCCAATTTTTGCTACCGGTTTTAATGCATCACTCATTGAGCTCTTACATATTGCTGCAATGACGAAGCCATATTATATGCAAGCATCAGCTTGTCATATATATAAAGTTATAGGCTACTACCTTGGCATTATGACTGCTCCAATATTGTTTGCCCTGGAAGAGTTCCCTCAGTTGGGTGCAGTTGTTGAAAAAGGAATTGACAATCCTGCAAATATTGAGATCGCTCTTGACTACCTTGCTAAGAGTAATGGTATACAGAGGACAAGGGATCTAGCAAGAAAGCATGCAAACCTTGCTGCAAAGGCAATCAAATCTCTGCCTGAGTGCGAGGACGTAAACGTAAGAAGATCAAGGAGGGCACTTCTAGATCTCACCCACATAGTCCTCACAAGAACCAGGTGA

Protein Analysis

323

Amino Acids

34.83

Weight (kDa)

9.05

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccI GTMKAC 1 cut(s) 823
AccII CGCG 3 cut(s) 42, 189, 261
AciI CCGC 7 cut(s) 40, 119, 153, 187, 225, 259, 410
AclWI GGATC 7 cut(s) 14, 104, 117, 161, 233, 305, 846
AcoI YGGCCR 4 cut(s) 3, 150, 222, 294
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 742, 743
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 5 cut(s) 180, 252, 324, 559, 758
AjnI CCWGG 4 cut(s) 404, 441, 723, 965
AluBI AGCT 5 cut(s) 245, 317, 469, 610, 659
AluI AGCT 5 cut(s) 245, 317, 469, 610, 659
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 2 cut(s) 454, 482
AlwI GGATC 7 cut(s) 14, 104, 117, 161, 233, 305, 846
AoxI GGCC 9 cut(s) 3, 72, 150, 222, 294, 363, 422, 453, 499
ApaI GGGCCC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 623, 866
AsiGI ACCGGT 1 cut(s) 584
AspS9I GGNCC 4 cut(s) 401, 422, 423, 500
AsuHPI GGTGA 2 cut(s) 556, 934
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 2 cut(s) 426, 931
BalI TGGCCA 2 cut(s) 5, 296
BamHI GGATCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 426, 612
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 2 cut(s) 610, 853
BccI CCATC 1 cut(s) 491
BceAI ACGGC 2 cut(s) 140, 212
BciT130I CCWGG 4 cut(s) 406, 443, 725, 967
BcoDI GTCTC 2 cut(s) 454, 482
BfaI CTAG 2 cut(s) 842, 935
BglI GCCNNNNNGGC 1 cut(s) 447
BglII AGATCT 1 cut(s) 937
BisI GCNGC 6 cut(s) 120, 153, 225, 411, 624, 867
BlsI GCNGC 6 cut(s) 121, 154, 226, 412, 625, 868
Bme1390I CCNGG 4 cut(s) 406, 443, 725, 967
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 401, 422, 423, 500
BmiI GGNNCC 5 cut(s) 111, 133, 403, 424, 502
BmrFI CCNGG 4 cut(s) 406, 443, 725, 967
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 3 cut(s) 577, 605, 662
BmuI ACTGGG 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 376
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 3 cut(s) 68, 359, 449
Bsa29I ATCGAT 1 cut(s) 309
BsaJI CCNNGG 8 cut(s) 147, 219, 291, 404, 405, 442, 691, 723
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 2 cut(s) 742, 743
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 135, 504
Bse3DI GCAATG 3 cut(s) 96, 387, 633
BseBI CCWGG 4 cut(s) 406, 443, 725, 967
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 8 cut(s) 147, 219, 291, 404, 405, 442, 691, 723
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 742, 743
BseMI GCAATG 3 cut(s) 96, 387, 633
BseMII CTCAG 2 cut(s) 752, 882
BseNI ACTGG 2 cut(s) 135, 504
BseSI GKGCMC 2 cut(s) 426, 931
BseXI GCAGC 2 cut(s) 610, 853
BsgI GTGCAG 1 cut(s) 768
Bsh1236I CGCG 3 cut(s) 42, 189, 261
BshFI GGCC 9 cut(s) 5, 74, 152, 224, 296, 365, 424, 455, 501
BshTI ACCGGT 1 cut(s) 584
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 2 cut(s) 742, 743
BsmAI GTCTC 2 cut(s) 454, 482
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 9 cut(s) 5, 74, 152, 224, 296, 365, 424, 455, 501
Bsp120I GGGCCC 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 426, 612, 931
Bsp143I GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
Bsp19I CCATGG 3 cut(s) 147, 219, 291
BspACI CCGC 7 cut(s) 40, 119, 153, 187, 225, 259, 410
BspANI GGCC 9 cut(s) 5, 74, 152, 224, 296, 365, 424, 455, 501
BspCNI CTCAG 2 cut(s) 751, 883
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 3 cut(s) 42, 189, 261
BspLI GGNNCC 5 cut(s) 111, 133, 403, 424, 502
BspPI GGATC 7 cut(s) 14, 104, 117, 161, 233, 305, 846
BsrDI GCAATG 3 cut(s) 96, 387, 633
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 2 cut(s) 135, 504
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 8 cut(s) 147, 219, 291, 404, 405, 442, 691, 723
BssMI GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
BssNAI GTATAC 1 cut(s) 824
BssT1I CCWWGG 4 cut(s) 147, 219, 291, 691
Bst1107I GTATAC 1 cut(s) 824
Bst2UI CCWGG 4 cut(s) 406, 443, 725, 967
Bst4CI ACNGT 3 cut(s) 10, 34, 301
Bst6I CTCTTC 1 cut(s) 723
BstAPI GCANNNNNTGC 1 cut(s) 863
BstC8I GCNNGC 2 cut(s) 651, 855
BstDEI CTNAG 5 cut(s) 536, 563, 738, 810, 891
BstDSI CCRYGG 3 cut(s) 147, 219, 291
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 3 cut(s) 42, 189, 261
BstKTI GATC 9 cut(s) 22, 112, 169, 241, 313, 792, 841, 920, 940
BstMAI GTCTC 2 cut(s) 454, 482
BstMBI GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
BstMWI GCNNNNNNNGC 7 cut(s) 66, 152, 224, 357, 447, 863, 872
BstNI CCWGG 4 cut(s) 406, 443, 725, 967
BstNSI RCATGY 1 cut(s) 857
BstSCI CCNGG 4 cut(s) 404, 441, 723, 965
BstSLI GKGCMC 2 cut(s) 426, 931
BstUI CGCG 3 cut(s) 42, 189, 261
BstV1I GCAGC 2 cut(s) 610, 853
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 4 cut(s) 19, 109, 838, 937
BstYI RGATCY 4 cut(s) 19, 109, 838, 937
BstZ17I GTATAC 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 9 cut(s) 5, 74, 152, 224, 296, 365, 424, 455, 501
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 3 cut(s) 147, 219, 291
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 651, 855
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 4 cut(s) 401, 422, 423, 500
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 556
CsiI ACCWGGT 1 cut(s) 965
Csp6I GTAC 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 584
CviAII CATG 8 cut(s) 53, 148, 200, 220, 272, 292, 344, 854
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 5 cut(s) 536, 563, 738, 810, 891
DpnI GATC 9 cut(s) 21, 111, 168, 240, 312, 791, 840, 919, 939
DpnII GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
EaeI YGGCCR 4 cut(s) 3, 150, 222, 294
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 4 cut(s) 147, 219, 291, 691
Eco24I GRGCYC 2 cut(s) 426, 612
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 610
EcoO109I RGGNCCY 2 cut(s) 401, 422
EcoRII CCWGG 4 cut(s) 404, 441, 723, 965
EcoT14I CCWWGG 4 cut(s) 147, 219, 291, 691
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 426, 612
ErhI CCWWGG 4 cut(s) 147, 219, 291, 691
FaeI CATG 8 cut(s) 56, 151, 203, 223, 275, 295, 347, 857
FaqI GGGAC 1 cut(s) 387
FatI CATG 8 cut(s) 52, 147, 199, 219, 271, 291, 343, 853
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 6 cut(s) 120, 153, 225, 411, 624, 867
FokI GGATG 1 cut(s) 555
FriOI GRGCYC 2 cut(s) 426, 612
Fsp4HI GCNGC 6 cut(s) 120, 153, 225, 411, 624, 867
FspBI CTAG 2 cut(s) 842, 935
GluI GCNGC 6 cut(s) 120, 153, 225, 411, 624, 867
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 9 cut(s) 5, 74, 152, 224, 296, 365, 424, 455, 501
HapII CCGG 1 cut(s) 585
HgaI GACGC 1 cut(s) 556
Hin1II CATG 8 cut(s) 56, 151, 203, 223, 275, 295, 347, 857
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 7 cut(s) 81, 176, 248, 320, 372, 462, 559
HpaII CCGG 1 cut(s) 585
HphI GGTGA 2 cut(s) 556, 934
Hpy166II GTNNAC 3 cut(s) 37, 824, 907
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 797, 935
Hpy8I GTNNAC 3 cut(s) 37, 824, 907
HpyAV CCTTC 2 cut(s) 122, 392
HpyCH4III ACNGT 3 cut(s) 10, 34, 301
HpyCH4IV ACGT 2 cut(s) 903, 909
HpyCH4V TGCA 9 cut(s) 160, 304, 596, 626, 649, 749, 779, 857, 869
HpyF10VI GCNNNNNNNGC 7 cut(s) 66, 152, 224, 357, 447, 863, 872
HpyF3I CTNAG 5 cut(s) 536, 563, 738, 810, 891
HpySE526I ACGT 2 cut(s) 903, 909
Hsp92II CATG 8 cut(s) 56, 151, 203, 223, 275, 295, 347, 857
Kzo9I GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
LmnI GCTCC 2 cut(s) 137, 712
Lsp1109I GCAGC 2 cut(s) 610, 853
LweI GCATC 3 cut(s) 577, 605, 662
MabI ACCWGGT 1 cut(s) 965
MaeI CTAG 2 cut(s) 842, 935
MaeII ACGT 2 cut(s) 903, 909
MaeIII GTNAC 1 cut(s) 544
MalI GATC 9 cut(s) 21, 111, 168, 240, 312, 791, 840, 919, 939
MboI GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
MboII GAAGA 4 cut(s) 381, 423, 740, 927
MflI RGATCY 4 cut(s) 19, 109, 838, 937
MhlI GDGCHC 3 cut(s) 426, 612, 931
MlsI TGGCCA 2 cut(s) 5, 296
MluCI AATT 6 cut(s) 46, 193, 265, 337, 573, 765
MluNI TGGCCA 2 cut(s) 5, 296
MlyI GAGTC 3 cut(s) 75, 366, 456
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 8 cut(s) 100, 124, 151, 747, 822, 892, 918, 965
Mox20I TGGCCA 2 cut(s) 5, 296
Mph1103I ATGCAT 1 cut(s) 598
MscI TGGCCA 2 cut(s) 5, 296
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 101, 392
Msp20I TGGCCA 2 cut(s) 5, 296
MspA1I CMGCKG 2 cut(s) 245, 317
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 4 cut(s) 406, 443, 725, 967
MvaI CCWGG 4 cut(s) 406, 443, 725, 967
MvnI CGCG 3 cut(s) 42, 189, 261
MwoI GCNNNNNNNGC 7 cut(s) 66, 152, 224, 357, 447, 863, 872
NcoI CCATGG 3 cut(s) 147, 219, 291
NdeII GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
NlaIII CATG 8 cut(s) 56, 151, 203, 223, 275, 295, 347, 857
NlaIV GGNNCC 5 cut(s) 111, 133, 403, 424, 502
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 857
PaeI GCATGC 1 cut(s) 857
PasI CCCWGGG 1 cut(s) 405
PfeI GAWTC 4 cut(s) 176, 248, 320, 559
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 6 cut(s) 121, 154, 226, 412, 625, 868
PleI GAGTC 3 cut(s) 75, 366, 456
PpsI GAGTC 3 cut(s) 75, 366, 456
PpuMI RGGWCCY 1 cut(s) 401
PsiI TTATAA 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 4 cut(s) 404, 441, 723, 965
PspGI CCWGG 4 cut(s) 404, 441, 723, 965
PspN4I GGNNCC 5 cut(s) 111, 133, 403, 424, 502
PspOMI GGGCCC 1 cut(s) 422
PspPI GGNCC 4 cut(s) 401, 422, 423, 500
PspPPI RGGWCCY 1 cut(s) 401
PsuI RGATCY 4 cut(s) 19, 109, 838, 937
PvuII CAGCTG 2 cut(s) 245, 317
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 2 cut(s) 101, 392
SacI GAGCTC 1 cut(s) 612
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 6 cut(s) 120, 153, 225, 411, 624, 867
Sau3AI GATC 9 cut(s) 19, 109, 166, 238, 310, 789, 838, 917, 937
Sau96I GGNCC 4 cut(s) 401, 422, 423, 500
SchI GAGTC 3 cut(s) 75, 366, 456
ScrFI CCNGG 4 cut(s) 406, 443, 725, 967
SduI GDGCHC 3 cut(s) 426, 612, 931
SexAI ACCWGGT 1 cut(s) 965
SfaNI GCATC 3 cut(s) 577, 605, 662
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 101, 392
SmlI CTYRAG 3 cut(s) 83, 374, 464
SmoI CTYRAG 3 cut(s) 83, 374, 464
SphI GCATGC 1 cut(s) 857
Sse9I AATT 6 cut(s) 46, 193, 265, 337, 573, 765
SsiI CCGC 7 cut(s) 40, 119, 153, 187, 225, 259, 410
SspI AATATT 2 cut(s) 714, 784
SspMI CTAG 2 cut(s) 842, 935
SstI GAGCTC 1 cut(s) 612
StyD4I CCNGG 4 cut(s) 404, 441, 723, 965
StyI CCWWGG 4 cut(s) 147, 219, 291, 691
TaaI ACNGT 3 cut(s) 10, 34, 301
TaiI ACGT 2 cut(s) 906, 912
TaqI TCGA 2 cut(s) 309, 383
TasI AATT 6 cut(s) 46, 193, 265, 337, 573, 765
TauI GCSGC 4 cut(s) 122, 155, 227, 413
TfiI GAWTC 4 cut(s) 176, 248, 320, 559
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 2 cut(s) 623, 866
Tsp45I GTSAC 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 1 cut(s) 857
XmiI GTMKAC 1 cut(s) 823
XspI CTAG 2 cut(s) 842, 935
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.