Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Reverse (-)

1735634 .. 1742827

Gene Structure 7194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGGGGCACGCTAAAGTTACGATCTCCTACAACCTGCCCAAGTTTCGCCAATTCACCGCATTCCGGACATCGGATACATGGGGGCAATAAAGTTGGCAAAGAAAGCAGCAACCCCTCTCATTTTCTTACCGGTGACCACACTTCGGTCCTAGAATCCTCAAGAGCCGACTGTCGGTGCCACCAAACCCTCTGTCAACGTGTTTCGGTCCTAGTCTCCTCGGGAGCCGGCGCAATGCTCGCGACCACAACAGATTACGGAACCGGCCAAGCAAGGAAGACCGACTTTGATATATTAGCGGCTGATGATGCAAAGCAAAACAGATTAAGCTACGTTGCTCATTACTTGGAGGTAGGAGAATTTTATGACATAGGTGCTGGCGATTATGAGTACAACTGTACAAGTCAATCTCAGTTTCTGAACTTGACTAAGATCGTTTCCAAGTTTCGAGTGAAAATGACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.84

Weight (kDa)

7.7

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	1 cut(s)	242
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	2 cut(s)	59, 299
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	2 cut(s)	392, 400
AfiI	CCNNNNNNNGG	4 cut(s)	65, 72, 145, 174
AflIII	ACRYGT	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	131
AluBI	AGCT	1 cut(s)	330
AluI	AGCT	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	359
ArsI	GACNNNNNNTTYG	2 cut(s)	178, 210
AsiGI	ACCGGT	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	148, 208
AsuHPI	GGTGA	2 cut(s)	48, 146
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	148, 208
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	152, 212
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	109, 300
BlsI	GCNGC	2 cut(s)	110, 301
Bme18I	GGWCC	2 cut(s)	148, 208
BmeT110I	CYCGRG	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	148, 208
BmiI	GGNNCC	3 cut(s)	179, 226, 262
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	65, 131
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 72, 145, 174
Bse118I	RCCGGY	3 cut(s)	131, 227, 263
Bse3DI	GCAATG	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	65, 72, 145, 174
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	425
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	177
BshTI	ACCGGT	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	4 cut(s)	66, 132, 228, 264
BslI	CCNNNNNNNGG	4 cut(s)	65, 72, 145, 174
BsmAI	GTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	267
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	23, 432
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	2 cut(s)	59, 299
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	424
BspEI	TCCGGA	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	3 cut(s)	179, 226, 262
BspMI	ACCTGC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	3 cut(s)	131, 227, 263
BsrGI	TGTACA	1 cut(s)	398
BssAI	RCCGGY	3 cut(s)	131, 227, 263
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	23, 432
Bst4CI	ACNGT	2 cut(s)	173, 398
BstAUI	TGTACA	1 cut(s)	398
BstC8I	GCNNGC	4 cut(s)	11, 229, 240, 379
BstDEI	CTNAG	2 cut(s)	411, 429
BstEII	GGTNACC	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	26, 435
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	23, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 239, 308
BstPI	GGTNACC	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	267
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	11, 229, 240, 379
CaiI	CAGNNNCTG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	3 cut(s)	131, 227, 263
Cfr13I	GGNCC	2 cut(s)	148, 208
Csp6I	GTAC	2 cut(s)	391, 399
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	5 cut(s)	167, 227, 267, 302, 330
CviKI_1	RGCY	5 cut(s)	167, 227, 267, 302, 330
CviQI	GTAC	2 cut(s)	391, 399
DdeI	CTNAG	2 cut(s)	411, 429
DpnI	GATC	2 cut(s)	25, 434
DpnII	GATC	2 cut(s)	23, 432
EaeI	YGGCCR	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	148, 208
Eco88I	CYCGRG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	134
FaeI	CATG	1 cut(s)	83
FaiI	YATR	5 cut(s)	81, 293, 366, 371, 387
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	109, 300
Fsp4HI	GCNGC	2 cut(s)	109, 300
FspBI	CTAG	2 cut(s)	152, 212
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	109, 300
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	4 cut(s)	66, 132, 228, 264
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	4 cut(s)	66, 132, 228, 264
HphI	GGTGA	2 cut(s)	48, 146
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	75, 420
Hpy188III	TCNNGA	4 cut(s)	66, 162, 222, 241
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	173, 398
HpyCH4IV	ACGT	2 cut(s)	199, 333
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 239, 308
HpyF3I	CTNAG	2 cut(s)	411, 429
HpySE526I	ACGT	2 cut(s)	199, 333
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	23, 432
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	6 cut(s)	49, 79, 145, 241, 277, 363
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	152, 212
MaeII	ACGT	2 cut(s)	199, 333
MaeIII	GTNAC	2 cut(s)	18, 134
MalI	GATC	2 cut(s)	25, 434
MboI	GATC	2 cut(s)	23, 432
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	52, 359
MnlI	CCTC	5 cut(s)	127, 169, 200, 229, 343
MroI	TCCGGA	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	1 cut(s)	326
MspI	CCGG	4 cut(s)	66, 132, 228, 264
Mva1269I	GAATGC	1 cut(s)	61
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	105, 239, 308
NaeI	GCCGGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	23, 432
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	3 cut(s)	179, 226, 262
NmuCI	GTSAC	1 cut(s)	134
NruI	TCGCGA	1 cut(s)	242
PctI	GAATGC	1 cut(s)	61
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	110, 301
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	179, 226, 262
PspPI	GGNCC	2 cut(s)	148, 208
PstNI	CAGNNNCTG	1 cut(s)	418
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	2 cut(s)	392, 400
RsaNI	GTAC	2 cut(s)	391, 399
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	109, 300
Sau3AI	GATC	2 cut(s)	23, 432
Sau96I	GGNCC	2 cut(s)	148, 208
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	6 cut(s)	38, 202, 332, 336, 354, 376
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	148, 208
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	52, 359
SsiI	CCGC	2 cut(s)	59, 299
SspMI	CTAG	2 cut(s)	152, 212
TaaI	ACNGT	2 cut(s)	173, 398
TaiI	ACGT	2 cut(s)	202, 336
TaqI	TCGA	1 cut(s)	448
TaqII	GACCGA	3 cut(s)	136, 196, 296
TasI	AATT	2 cut(s)	52, 359
TatI	WGTACW	2 cut(s)	390, 398
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	148, 208
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	2 cut(s)	152, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.