Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Reverse (-)

41404735 .. 41413385

Gene Structure 8651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1280000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTTATTTTCTCGGATTCAAAGAAGCAGCTTCAATGGGTTGTGTCGGTGTTTGCTTTCCCATCGAAGGGACCCGCAACAGTTCGTCGCCGCCCGCACTTACTCTCAATCGCTGAATGATTCGACCCAGAAGATTATGGGTTGCGGGGAATTTATTTCGTGGGGATTGCCGCCGGTTTTCCATGGTTCCAGGCACCAAATTCACCATCAAAGCAGCTCCATAGTTGAGGAACCGCTTGACCCATTCTCGCTTGTTTCCGATGAGCTGTCGATTATTGCTAACAGGTTGCGGGCAATGGTAGTTGCTGAGGTCCCTAAGCTTGCCTCCGCTGCTGAGTACTTCTTTAAAATGGGAGTGGAAGGAAAGAGGTTTCGTCCCACGGTCTTATTGTTGATGTCAACCGCTTTGAATATCACTGTACCTGAACCTCCTACAGAACTGCGAGTGGCTTTGTCAACAGAGCTACGCGCAAGGCAACAATGTATAGCAGAAGTCACAGAGATGATTCATGTGGCAAGCCTTCTACATGATGATGTATTGGATGATGCAGACACAAGGCGTGGTGTTGGTACATTAAATTGTATAATGGGAAATAAGTTAGCTGTTTTAGCGGGGGATTTTCTGCTTTCCCGAGCCTGTGTCGCACTTGCCTCCTTGAGAAACACAGAGGTTGTATCATTAATGTCAACGGTTGTTGAGCATCTTGTGACAGGTGAAACCATGCAAATCACTACCACATCTGATCAACGTTGTAGCATGGAATATTATATACAAAAGACTTATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAAGCAATTGCCGTTCTTGCTGGGCATACAACCGAAGTTGCTATGTTGGCTTATGAGTATGGAAAAAATCTGGGATTGGCATTTCAATTAATAGATGACGTTCTTGATTTTATGGGCACATCAGCTTCACTTGGAAAGGGCTCTTTATCTGACATCCGCCATGGCATCGTAACTGCTCCAATATTGTTTGCCATGGAAGAGTTTCCTCAGTTGCGTATGGTTGTTGAACAGGGCCTTGATAACAACCCTGCAAATATTGAACTTGCTCTCGACTACCTAGGTAGGAGCCGTGGAATACATAGGACAAGGGAGCTAGCCACAAAACATGCAAACCTTGCCGCAGCGGCAATCGAATCTCTGCCCGAGAGCAAAGACAAGAATGTCAGAAAATCGAGGAGGGCACTCCTAGATCTCACCCAGGTAGTCATTACAAGAACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

420

Amino Acids

46.28

Weight (kDa)

7.19

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	106 - 357	9.7e-67	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1196
AccB1I	GGYRCC	1 cut(s)	192
AccII	CGCG	1 cut(s)	468
AclI	AACGTT	1 cut(s)	748
AcsI	RAATTY	2 cut(s)	149, 198
AfaI	GTAC	3 cut(s)	338, 420, 571
AfiI	CCNNNNNNNGG	2 cut(s)	66, 67
AgsI	TTSAA	7 cut(s)	20, 34, 409, 807, 902, 1043, 1076
AjnI	CCWGG	2 cut(s)	188, 1233
AluBI	AGCT	8 cut(s)	30, 216, 265, 319, 463, 602, 941, 1129
AluI	AGCT	8 cut(s)	30, 216, 265, 319, 463, 602, 941, 1129
Ama87I	CYCGRG	2 cut(s)	630, 1178
AoxI	GGCC	1 cut(s)	1048
ApeKI	GCWGC	4 cut(s)	27, 213, 329, 1157
ApoI	RAATTY	2 cut(s)	149, 198
AseI	ATTAAT	2 cut(s)	680, 905
Asp700I	GAANNNNTTC	1 cut(s)	1017
AspA2I	CCTAGG	1 cut(s)	1093
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	3 cut(s)	70, 310, 1048
AsuHPI	GGTGA	3 cut(s)	194, 725, 1222
AsuNHI	GCTAGC	1 cut(s)	1129
AvaI	CYCGRG	2 cut(s)	630, 1178
AvaII	GGWCC	2 cut(s)	70, 310
AvrII	CCTAGG	1 cut(s)	1093
BaeGI	GKGCMC	2 cut(s)	935, 1219
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	959
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	39, 225, 316, 1169
BccI	CCATC	2 cut(s)	69, 213
BceAI	ACGGC	2 cut(s)	812, 1089
BciT130I	CCWGG	2 cut(s)	190, 1235
BclI	TGATCA	1 cut(s)	742
BfaI	CTAG	3 cut(s)	1094, 1130, 1223
BfmI	CTRYAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	1160
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	8 cut(s)	28, 90, 170, 214, 330, 1155, 1158, 1161
BlnI	CCTAGG	1 cut(s)	1093
BlsI	GCNGC	8 cut(s)	29, 91, 171, 215, 331, 1156, 1159, 1162
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	190, 1235
Bme18I	GGWCC	2 cut(s)	70, 310
BmeT110I	CYCGRG	2 cut(s)	630, 1178
BmgT120I	GGNCC	3 cut(s)	70, 310, 1048
BmiI	GGNNCC	7 cut(s)	71, 72, 187, 194, 231, 312, 1103
BmrFI	CCNGG	2 cut(s)	190, 1235
BmsI	GCATC	4 cut(s)	535, 709, 803, 990
BmtI	GCTAGC	1 cut(s)	1133
Bpu10I	CCTNAGC	2 cut(s)	306, 315
BpuEI	CTTGAG	1 cut(s)	676
BsaJI	CCNNGG	7 cut(s)	181, 378, 976, 1008, 1093, 1105, 1233
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 67
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	190, 1235
BseDI	CCNNGG	7 cut(s)	181, 378, 976, 1008, 1093, 1105, 1233
BseGI	GGATG	2 cut(s)	547, 969
BseLI	CCNNNNNNNGG	2 cut(s)	66, 67
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	297, 324, 1037
BseRI	GAGGAG	1 cut(s)	1225
BseSI	GKGCMC	2 cut(s)	935, 1219
BseXI	GCAGC	4 cut(s)	39, 225, 316, 1169
BseYI	CCCAGC	1 cut(s)	836
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	1050
BshNI	GGYRCC	1 cut(s)	192
BsiHKCI	CYCGRG	2 cut(s)	630, 1178
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	3 cut(s)	83, 296, 360
BslI	CCNNNNNNNGG	2 cut(s)	66, 67
BsmFI	GGGAC	3 cut(s)	83, 296, 360
BsnI	GGCC	1 cut(s)	1050
BsoBI	CYCGRG	2 cut(s)	630, 1178
Bsp1286I	GDGCHC	3 cut(s)	935, 959, 1219
Bsp143I	GATC	2 cut(s)	742, 1225
Bsp19I	CCATGG	3 cut(s)	181, 976, 1008
BspANI	GGCC	1 cut(s)	1050
BspCNI	CTCAG	3 cut(s)	298, 325, 1036
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	7 cut(s)	71, 72, 187, 194, 231, 312, 1103
BspOI	GCTAGC	1 cut(s)	1133
BspT107I	GGYRCC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	7 cut(s)	181, 378, 976, 1008, 1093, 1105, 1233
BssMI	GATC	2 cut(s)	742, 1225
BssT1I	CCWWGG	4 cut(s)	181, 976, 1008, 1093
Bst2UI	CCWGG	2 cut(s)	190, 1235
Bst4CI	ACNGT	4 cut(s)	81, 382, 418, 691
Bst6I	CTCTTC	1 cut(s)	1008
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstC8I	GCNNGC	5 cut(s)	94, 291, 321, 517, 1131
BstDEI	CTNAG	4 cut(s)	306, 315, 333, 1023
BstDSI	CCRYGG	5 cut(s)	181, 378, 976, 1008, 1105
BstF5I	GGATG	2 cut(s)	547, 969
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	2 cut(s)	745, 1228
BstMBI	GATC	2 cut(s)	742, 1225
BstMWI	GCNNNNNNNGC	7 cut(s)	329, 608, 641, 833, 863, 1151, 1160
BstNI	CCWGG	2 cut(s)	190, 1235
BstNSI	RCATGY	1 cut(s)	1145
BstSCI	CCNGG	2 cut(s)	188, 1233
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	2 cut(s)	935, 1219
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	39, 225, 316, 1169
BstX2I	RGATCY	1 cut(s)	1225
BstYI	RGATCY	1 cut(s)	1225
BsuRI	GGCC	1 cut(s)	1050
BtgI	CCRYGG	5 cut(s)	181, 378, 976, 1008, 1105
BtsCI	GGATG	2 cut(s)	547, 969
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	5 cut(s)	94, 291, 321, 517, 1131
CfoI	GCGC	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	70, 310, 1048
Csp6I	GTAC	3 cut(s)	337, 419, 570
CviAII	CATG	8 cut(s)	182, 509, 527, 721, 757, 977, 1009, 1142
CviQI	GTAC	3 cut(s)	337, 419, 570
DdeI	CTNAG	4 cut(s)	306, 315, 333, 1023
DpnI	GATC	2 cut(s)	744, 1227
DpnII	GATC	2 cut(s)	742, 1225
DraI	TTTAAA	1 cut(s)	346
DrdI	GACNNNNNNGTC	1 cut(s)	1196
DseDI	GACNNNNNNGTC	1 cut(s)	1196
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
EciI	GGCGGA	1 cut(s)	962
Eco130I	CCWWGG	4 cut(s)	181, 976, 1008, 1093
Eco24I	GRGCYC	1 cut(s)	959
Eco47I	GGWCC	2 cut(s)	70, 310
Eco88I	CYCGRG	2 cut(s)	630, 1178
EcoO109I	RGGNCCY	3 cut(s)	70, 310, 1048
EcoRII	CCWGG	2 cut(s)	188, 1233
EcoT14I	CCWWGG	4 cut(s)	181, 976, 1008, 1093
EcoT38I	GRGCYC	1 cut(s)	959
ErhI	CCWWGG	4 cut(s)	181, 976, 1008, 1093
FaeI	CATG	8 cut(s)	185, 512, 530, 724, 760, 980, 1012, 1145
FaqI	GGGAC	3 cut(s)	83, 296, 360
FatI	CATG	8 cut(s)	181, 508, 526, 720, 756, 976, 1008, 1141
FauI	CCCGC	5 cut(s)	81, 101, 137, 282, 604
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	8 cut(s)	28, 90, 170, 214, 330, 1155, 1158, 1161
FokI	GGATG	2 cut(s)	554, 956
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	8 cut(s)	28, 90, 170, 214, 330, 1155, 1158, 1161
FspBI	CTAG	3 cut(s)	1094, 1130, 1223
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	8 cut(s)	28, 90, 170, 214, 330, 1155, 1158, 1161
GsaI	CCCAGC	1 cut(s)	840
HaeIII	GGCC	1 cut(s)	1050
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	8 cut(s)	185, 512, 530, 724, 760, 980, 1012, 1145
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HincII	GTYRAC	3 cut(s)	399, 456, 687
HindII	GTYRAC	3 cut(s)	399, 456, 687
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	4 cut(s)	16, 119, 505, 1169
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	194, 725, 1222
Hpy166II	GTNNAC	3 cut(s)	399, 456, 687
Hpy188I	TCNGA	5 cut(s)	15, 259, 742, 967, 1202
Hpy188III	TCNNGA	3 cut(s)	630, 920, 1085
Hpy8I	GTNNAC	3 cut(s)	399, 456, 687
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	60, 353, 530
HpyCH4III	ACNGT	4 cut(s)	81, 382, 418, 691
HpyCH4IV	ACGT	2 cut(s)	748, 915
HpyCH4V	TGCA	6 cut(s)	548, 724, 794, 816, 1067, 1145
HpyF10VI	GCNNNNNNNGC	7 cut(s)	329, 608, 641, 833, 863, 1151, 1160
HpyF3I	CTNAG	4 cut(s)	306, 315, 333, 1023
HpySE526I	ACGT	2 cut(s)	748, 915
Hsp92II	CATG	8 cut(s)	185, 512, 530, 724, 760, 980, 1012, 1145
HspAI	GCGC	1 cut(s)	468
KflI	GGGWCCC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	742, 1225
LmnI	GCTCC	4 cut(s)	221, 997, 1101, 1126
Lsp1109I	GCAGC	4 cut(s)	39, 225, 316, 1169
LweI	GCATC	4 cut(s)	535, 709, 803, 990
MaeI	CTAG	3 cut(s)	1094, 1130, 1223
MaeII	ACGT	2 cut(s)	748, 915
MaeIII	GTNAC	3 cut(s)	493, 706, 985
MalI	GATC	2 cut(s)	744, 1227
MboI	GATC	2 cut(s)	742, 1225
MboII	GAAGA	2 cut(s)	142, 1025
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	3 cut(s)	935, 959, 1219
MluCI	AATT	5 cut(s)	149, 198, 577, 822, 902
MroXI	GAANNNNTTC	1 cut(s)	1017
MseI	TTAA	4 cut(s)	345, 575, 680, 905
MslI	CAYNNNNRTG	2 cut(s)	500, 531
MspA1I	CMGCKG	2 cut(s)	329, 1160
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	190, 1235
MunI	CAATTG	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	190, 1235
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	7 cut(s)	329, 608, 641, 833, 863, 1151, 1160
NcoI	CCATGG	3 cut(s)	181, 976, 1008
NdeII	GATC	2 cut(s)	742, 1225
NheI	GCTAGC	1 cut(s)	1129
NlaIII	CATG	8 cut(s)	185, 512, 530, 724, 760, 980, 1012, 1145
NlaIV	GGNNCC	7 cut(s)	71, 72, 187, 194, 231, 312, 1103
NmuCI	GTSAC	2 cut(s)	493, 706
NspI	RCATGY	1 cut(s)	1145
PdmI	GAANNNNTTC	1 cut(s)	1017
PfeI	GAWTC	4 cut(s)	16, 119, 505, 1169
PkrI	GCNGC	8 cut(s)	29, 91, 171, 215, 331, 1156, 1159, 1162
PpuMI	RGGWCCY	2 cut(s)	70, 310
PshBI	ATTAAT	2 cut(s)	680, 905
Psp1406I	AACGTT	1 cut(s)	748
Psp5II	RGGWCCY	2 cut(s)	70, 310
Psp6I	CCWGG	2 cut(s)	188, 1233
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	2 cut(s)	188, 1233
PspN4I	GGNNCC	7 cut(s)	71, 72, 187, 194, 231, 312, 1103
PspPI	GGNCC	3 cut(s)	70, 310, 1048
PspPPI	RGGWCCY	2 cut(s)	70, 310
PsuI	RGATCY	1 cut(s)	1225
RsaI	GTAC	3 cut(s)	338, 420, 571
RsaNI	GTAC	3 cut(s)	337, 419, 570
RseI	CAYNNNNRTG	2 cut(s)	500, 531
SaqAI	TTAA	4 cut(s)	345, 575, 680, 905
SatI	GCNGC	8 cut(s)	28, 90, 170, 214, 330, 1155, 1158, 1161
Sau3AI	GATC	2 cut(s)	742, 1225
Sau96I	GGNCC	3 cut(s)	70, 310, 1048
ScaI	AGTACT	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	190, 1235
SduI	GDGCHC	3 cut(s)	935, 959, 1219
SfaNI	GCATC	4 cut(s)	535, 709, 803, 990
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	70, 310
SmiMI	CAYNNNNRTG	2 cut(s)	500, 531
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	5 cut(s)	149, 198, 577, 822, 902
SspI	AATATT	3 cut(s)	764, 999, 1072
SspMI	CTAG	3 cut(s)	1094, 1130, 1223
StyD4I	CCNGG	2 cut(s)	188, 1233
StyI	CCWWGG	4 cut(s)	181, 976, 1008, 1093
TaaI	ACNGT	4 cut(s)	81, 382, 418, 691
TaiI	ACGT	2 cut(s)	751, 918
TaqI	TCGA	6 cut(s)	64, 122, 269, 1086, 1167, 1208
TasI	AATT	5 cut(s)	149, 198, 577, 822, 902
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	4 cut(s)	92, 172, 1157, 1163
TfiI	GAWTC	4 cut(s)	16, 119, 505, 1169
Tru1I	TTAA	4 cut(s)	345, 575, 680, 905
Tru9I	TTAA	4 cut(s)	345, 575, 680, 905
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	2 cut(s)	493, 706
TseI	GCWGC	4 cut(s)	27, 213, 329, 1157
Tsp45I	GTSAC	2 cut(s)	493, 706
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	70, 310
VspI	ATTAAT	2 cut(s)	680, 905
XapI	RAATTY	2 cut(s)	149, 198
XceI	RCATGY	1 cut(s)	1145
XmaJI	CCTAGG	1 cut(s)	1093
XmnI	GAANNNNTTC	1 cut(s)	1017
XspI	CTAG	3 cut(s)	1094, 1130, 1223
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.