Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Reverse (-)

2942311 .. 2949144

Gene Structure 6834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05080.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGATCTTTTCTCGGGGATTTTCTAGGCTCCCAAGAACCAGCTTCAATGGCTTATGTCGGTGTTTGCTCTCTAATCGACAAGACCCACATCAATTCTTGGCCTCCAAAGCTTGTTCTCAGTCTCTTGGGGATTCGACCCAGAAGATTTTGGGTTGCAGAGAGTTTTGGTCTTCTGGGTTGCCTACTTTCCCTGGCTCCTTAACTTCTAGGCATCAAATTCACAACCAAATTAGCTCCATAGTTGAGGAACCACAAGACCCTTTCTCGCTTGTTTCTGATGAGCTATCACTTATTGCTGACAGGTTGCGAGCGATGGTAGTTGCTAAGGTTCCTAAGCTTGCCTCTGCTGCTGAGTACTTCTTTAAAATGGGGGTGGAAGGAAAGAGGTTTCGTCCTACGGTCTTATTATTGATGTCAACAGCGCTGAATGGCAGTATACCGGAGCCTCCTACGCAACCTGATCCCCCTACACGATTGGAAGATGCTTTCCCAACGGAATTGCGGGCAAGACAACAATGTATAGCAGAAGTGACCGAGATGATTCATGTCGCAAGCCTCCTACATGATGATGTATTGGATGATGCAGACACAAGACGTGGTGTGGTTTCATTAAATTCCGTAATGGGAAATAAGTTAGCTGTATTAGCAGGAGATTTTCTGCTCTCTCGAGCTTGTGTTGCACTTGCCTCTCTAAGAAACACAGAGGTGGTGTCTTTACTATCAACAGTTGTGGAGCACCTTGTTACAGGTGAAACTATGCAAATGACAACTGAAGCCGATCAACGTTGTAGCATGGAATATTATATAGAGAAGACATATTACAAGACTGCATCATTGATTTCAAACAGTTGCAAAGCGATTGCCATTCTTGCTGGGCATACAACGGAAGTTGCAATGCTGGCTTTTGACTATGGAAAAAATCTGGGATTGGCATTTCAATTGATAGATGATGTCCTTGATTTTACCGGCACGTCAGCATCTCTTGGAAAGGGTTCTTTATCTGACATCCGTCATGGCATAGTTACTGCTCCAATATTATTTGCAATGGAAGAGTTCCCTCAGTTGCGTGCAGTGGTTGAACAGGGATTTGACAATCCTGCAAATGTTGAGATTGCTCTTGACTACCTTGGTAAGAGCAATGGAATACAGAGGACAAGGGAGCTAGCCCGAAAACATGCAAGCCTTGCTGCAGAGGCAATTGAATCTCTGCCGGAGAGCCACGATGAAGATGTACTAAGATCAAGGAGGGCGCTCCTGGATCTCACCCATATAGTCATTACAAGAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

431

Amino Acids

47.24

Weight (kDa)

5.81

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	112 - 308	3e-45	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	1 cut(s)	502
AclI	AACGTT	1 cut(s)	784
AclWI	GGATC	2 cut(s)	455, 1266
AcsI	RAATTY	2 cut(s)	216, 613
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	2 cut(s)	356, 1233
AfeI	AGCGCT	1 cut(s)	423
AgsI	TTSAA	5 cut(s)	46, 843, 938, 1079, 1202
AjiI	CACGTC	2 cut(s)	596, 972
AjnI	CCWGG	2 cut(s)	190, 1254
AleI	CACNNNNGTG	1 cut(s)	704
AluBI	AGCT	8 cut(s)	42, 110, 234, 283, 337, 638, 671, 1162
AluI	AGCT	8 cut(s)	42, 110, 234, 283, 337, 638, 671, 1162
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	455, 1266
Ama87I	CYCGRG	2 cut(s)	12, 666
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	347, 1187
ApoI	RAATTY	2 cut(s)	216, 613
Asp700I	GAANNNNTTC	1 cut(s)	991
AspLEI	GCGC	2 cut(s)	424, 1252
AsuHPI	GGTGA	2 cut(s)	761, 1255
AsuNHI	GCTAGC	1 cut(s)	1162
AvaI	CYCGRG	2 cut(s)	12, 666
BarI	GAAGNNNNNNTAC	2 cut(s)	803, 835
BbsI	GAAGAC	2 cut(s)	162, 818
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	2 cut(s)	334, 1174
BccI	CCATC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	192, 1256
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	3 cut(s)	24, 207, 1163
BfmI	CTRYAG	1 cut(s)	1188
BfoI	RGCGCY	2 cut(s)	425, 1253
BisI	GCNGC	2 cut(s)	348, 1188
BlsI	GCNGC	2 cut(s)	349, 1189
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	2 cut(s)	192, 1256
BmeT110I	CYCGRG	2 cut(s)	12, 666
BmgBI	CACGTC	2 cut(s)	596, 972
BmiI	GGNNCC	5 cut(s)	29, 196, 249, 330, 444
BmrFI	CCNGG	2 cut(s)	192, 1256
BmsI	GCATC	5 cut(s)	220, 472, 571, 839, 986
BmtI	GCTAGC	1 cut(s)	1166
BoxI	GACNNNNGTC	1 cut(s)	1008
BpiI	GAAGAC	2 cut(s)	162, 818
Bpu10I	CCTNAGC	2 cut(s)	324, 333
BsaJI	CCNNGG	2 cut(s)	190, 1126
BsaWI	WCCGGW	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	965
Bse3DI	GCAATG	3 cut(s)	900, 1050, 1144
BseBI	CCWGG	2 cut(s)	192, 1256
BseDI	CCNNGG	2 cut(s)	190, 1126
BseGI	GGATG	2 cut(s)	583, 1005
BseMI	GCAATG	3 cut(s)	900, 1050, 1144
BseMII	CTCAG	3 cut(s)	131, 342, 1073
BseXI	GCAGC	2 cut(s)	334, 1174
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	1089
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	738
BsiHKCI	CYCGRG	2 cut(s)	12, 666
BsiSI	CCGG	3 cut(s)	440, 966, 1211
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	12, 666
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	5 cut(s)	3, 460, 778, 1238, 1258
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	130, 343, 1072
BspLI	GGNNCC	5 cut(s)	29, 196, 249, 330, 444
BspMAI	CTGCAG	1 cut(s)	1192
BspOI	GCTAGC	1 cut(s)	1166
BspPI	GGATC	2 cut(s)	455, 1266
BsrDI	GCAATG	3 cut(s)	900, 1050, 1144
BsrFI	RCCGGY	1 cut(s)	965
BssAI	RCCGGY	1 cut(s)	965
BssECI	CCNNGG	2 cut(s)	190, 1126
BssMI	GATC	5 cut(s)	3, 460, 778, 1238, 1258
BssNAI	GTATAC	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	1126
Bst1107I	GTATAC	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	192, 1256
Bst4CI	ACNGT	3 cut(s)	400, 727, 848
Bst6I	CTCTTC	1 cut(s)	1044
BstAPI	GCANNNNNTGC	1 cut(s)	1184
BstC8I	GCNNGC	8 cut(s)	309, 339, 504, 553, 900, 1068, 1164, 1180
BstDEI	CTNAG	7 cut(s)	117, 324, 333, 351, 692, 1059, 1235
BstF5I	GGATG	2 cut(s)	583, 1005
BstH2I	RGCGCY	2 cut(s)	425, 1253
BstHHI	GCGC	2 cut(s)	424, 1252
BstKTI	GATC	5 cut(s)	6, 463, 781, 1241, 1261
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	3, 460, 778, 1238, 1258
BstNI	CCWGG	2 cut(s)	192, 1256
BstNSI	RCATGY	1 cut(s)	1178
BstPAI	GACNNNNGTC	1 cut(s)	1008
BstSCI	CCNGG	2 cut(s)	190, 1254
BstSFI	CTRYAG	1 cut(s)	1188
BstV1I	GCAGC	2 cut(s)	334, 1174
BstV2I	GAAGAC	2 cut(s)	162, 818
BstX2I	RGATCY	1 cut(s)	1258
BstYI	RGATCY	1 cut(s)	1258
BstZ17I	GTATAC	1 cut(s)	437
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	326
BtrI	CACGTC	2 cut(s)	596, 972
BtsCI	GGATG	2 cut(s)	583, 1005
BtsI	GCAGTG	1 cut(s)	1077
BtsIMutI	CAGTG	1 cut(s)	1077
Cac8I	GCNNGC	8 cut(s)	309, 339, 504, 553, 900, 1068, 1164, 1180
CfoI	GCGC	2 cut(s)	424, 1252
Cfr10I	RCCGGY	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	355, 1232
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	5 cut(s)	545, 563, 793, 1013, 1175
CviQI	GTAC	2 cut(s)	355, 1232
DdeI	CTNAG	7 cut(s)	117, 324, 333, 351, 692, 1059, 1235
DpnI	GATC	5 cut(s)	5, 462, 780, 1240, 1260
DpnII	GATC	5 cut(s)	3, 460, 778, 1238, 1258
DraI	TTTAAA	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	1044
EarI	CTCTTC	1 cut(s)	1044
Eco130I	CCWWGG	1 cut(s)	1126
Eco47III	AGCGCT	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	2 cut(s)	12, 666
EcoRII	CCWGG	2 cut(s)	190, 1254
EcoT14I	CCWWGG	1 cut(s)	1126
ErhI	CCWWGG	1 cut(s)	1126
FaeI	CATG	5 cut(s)	548, 566, 796, 1016, 1178
FatI	CATG	5 cut(s)	544, 562, 792, 1012, 1174
FauI	CCCGC	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	348, 1188
FokI	GGATG	2 cut(s)	590, 992
Fsp4HI	GCNGC	2 cut(s)	348, 1188
FspBI	CTAG	3 cut(s)	24, 207, 1163
GlaI	GCGC	2 cut(s)	423, 1251
GluI	GCNGC	2 cut(s)	348, 1188
GsaI	CCCAGC	1 cut(s)	876
HaeII	RGCGCY	2 cut(s)	425, 1253
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	440, 966, 1211
HhaI	GCGC	2 cut(s)	424, 1252
Hin1II	CATG	5 cut(s)	548, 566, 796, 1016, 1178
Hin6I	GCGC	2 cut(s)	422, 1250
HinP1I	GCGC	2 cut(s)	422, 1250
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	108, 335
HinfI	GANTC	3 cut(s)	131, 541, 1202
HpaII	CCGG	3 cut(s)	440, 966, 1211
HphI	GGTGA	2 cut(s)	761, 1255
Hpy166II	GTNNAC	2 cut(s)	417, 437
Hpy188I	TCNGA	2 cut(s)	277, 1003
Hpy188III	TCNNGA	2 cut(s)	666, 1118
Hpy8I	GTNNAC	2 cut(s)	417, 437
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	3 cut(s)	400, 727, 848
HpyCH4IV	ACGT	3 cut(s)	595, 784, 971
HpyF3I	CTNAG	7 cut(s)	117, 324, 333, 351, 692, 1059, 1235
HpySE526I	ACGT	3 cut(s)	595, 784, 971
Hsp92II	CATG	5 cut(s)	548, 566, 796, 1016, 1178
HspAI	GCGC	2 cut(s)	422, 1250
Kzo9I	GATC	5 cut(s)	3, 460, 778, 1238, 1258
LmnI	GCTCC	8 cut(s)	33, 200, 239, 442, 733, 1033, 1159, 1257
Lsp1109I	GCAGC	2 cut(s)	334, 1174
LweI	GCATC	5 cut(s)	220, 472, 571, 839, 986
MaeI	CTAG	3 cut(s)	24, 207, 1163
MaeII	ACGT	3 cut(s)	595, 784, 971
MaeIII	GTNAC	3 cut(s)	529, 742, 1021
MalI	GATC	5 cut(s)	5, 462, 780, 1240, 1260
MboI	GATC	5 cut(s)	3, 460, 778, 1238, 1258
MboII	GAAGA	6 cut(s)	154, 162, 491, 823, 1061, 1238
MfeI	CAATTG	2 cut(s)	938, 1197
MflI	RGATCY	1 cut(s)	1258
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	7 cut(s)	92, 216, 228, 497, 613, 938, 1197
MroXI	GAANNNNTTC	1 cut(s)	991
MseI	TTAA	3 cut(s)	200, 363, 611
MslI	CAYNNNNRTG	2 cut(s)	567, 704
MspI	CCGG	3 cut(s)	440, 966, 1211
MspR9I	CCNGG	2 cut(s)	192, 1256
MunI	CAATTG	2 cut(s)	938, 1197
MvaI	CCWGG	2 cut(s)	192, 1256
NdeII	GATC	5 cut(s)	3, 460, 778, 1238, 1258
NheI	GCTAGC	1 cut(s)	1162
NlaIII	CATG	5 cut(s)	548, 566, 796, 1016, 1178
NlaIV	GGNNCC	5 cut(s)	29, 196, 249, 330, 444
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	1178
OliI	CACNNNNGTG	1 cut(s)	704
PaeR7I	CTCGAG	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	3 cut(s)	131, 541, 1202
PfoI	TCCNGGA	1 cut(s)	1254
PkrI	GCNGC	2 cut(s)	349, 1189
PshAI	GACNNNNGTC	1 cut(s)	1008
Psp1406I	AACGTT	1 cut(s)	784
Psp6I	CCWGG	2 cut(s)	190, 1254
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	2 cut(s)	190, 1254
PspN4I	GGNNCC	5 cut(s)	29, 196, 249, 330, 444
PstI	CTGCAG	1 cut(s)	1192
PsuI	RGATCY	1 cut(s)	1258
RsaI	GTAC	2 cut(s)	356, 1233
RsaNI	GTAC	2 cut(s)	355, 1232
RseI	CAYNNNNRTG	2 cut(s)	567, 704
SaqAI	TTAA	3 cut(s)	200, 363, 611
SatI	GCNGC	2 cut(s)	348, 1188
Sau3AI	GATC	5 cut(s)	3, 460, 778, 1238, 1258
ScaI	AGTACT	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	192, 1256
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	5 cut(s)	220, 472, 571, 839, 986
SfcI	CTRYAG	1 cut(s)	1188
Sfr274I	CTCGAG	1 cut(s)	666
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	2 cut(s)	567, 704
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	7 cut(s)	92, 216, 228, 497, 613, 938, 1197
SsiI	CCGC	1 cut(s)	502
SspI	AATATT	2 cut(s)	800, 1035
SspMI	CTAG	3 cut(s)	24, 207, 1163
StyD4I	CCNGG	2 cut(s)	190, 1254
StyI	CCWWGG	1 cut(s)	1126
TaaI	ACNGT	3 cut(s)	400, 727, 848
TaiI	ACGT	3 cut(s)	598, 787, 974
TaqI	TCGA	3 cut(s)	76, 134, 667
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	7 cut(s)	92, 216, 228, 497, 613, 938, 1197
TatI	WGTACW	2 cut(s)	354, 1231
TfiI	GAWTC	3 cut(s)	131, 541, 1202
Tru1I	TTAA	3 cut(s)	200, 363, 611
Tru9I	TTAA	3 cut(s)	200, 363, 611
TscAI	CASTG	1 cut(s)	1077
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	347, 1187
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	533, 597, 1239
TspGWI	ACGGA	4 cut(s)	509, 607, 899, 998
TspRI	CASTG	1 cut(s)	1077
XapI	RAATTY	2 cut(s)	216, 613
XceI	RCATGY	1 cut(s)	1178
XhoI	CTCGAG	1 cut(s)	666
XmiI	GTMKAC	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	3 cut(s)	24, 207, 1163
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.