Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10849391 .. 10857987

Gene Structure 8597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCATCATCGATTTCAAATTCTTGCTGGGCATACAACACAAGTTGCCGAGATGGCTTTTGACTATGGAAAGAATCTGGGATTGGCGTTTCAATTGATAGACGATGTTCTTGATTTTTCGGGCACATCATCAACATCTCTTGGAAAGGGCTCATTATCTGACATCCGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

57

Amino Acids

6.24

Weight (kDa)

5.98

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	6 - 56	1.6e-11	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	17, 92
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
ApoI	RAATTY	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	152
BccI	CCATC	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	13
BoxI	GACNNNNGTC	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	10
BseGI	GGATG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	125, 152
BspDI	ATCGAT	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	10
CviJI	RGCY	2 cut(s)	56, 150
CviKI_1	RGCY	2 cut(s)	56, 150
Eco24I	GRGCYC	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	152
FaiI	YATR	2 cut(s)	33, 66
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
LpnPI	CCDG	2 cut(s)	12, 62
LweI	GCATC	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	125, 152
MluCI	AATT	2 cut(s)	18, 92
Mph1103I	ATGCAT	1 cut(s)	6
MunI	CAATTG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	125, 152
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	8 cut(s)	35, 39, 53, 61, 89, 122, 132, 152
Sse9I	AATT	2 cut(s)	18, 92
TaqI	TCGA	1 cut(s)	10
TasI	AATT	2 cut(s)	18, 92
TfiI	GAWTC	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	155
XapI	RAATTY	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.