pycom05g26020

Belongs to the FPP GGPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
27290410 .. 27295940
5531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26020.11

Sequence Viewer

Length: 1269 bp
ATGTTATTTTCTCGGGGATTTTCTCGGATTCAAAGAAGCAGCTTCAATGGGTTGTGTCGGTGTTTGCTTTCCCATCGCCGGGACCCGCAACAGTTCGTCGCCGCCAGCGCTTACTCTCAATTGCTGAGTGATTCGACCCAGAAGATTATGGGTTGCAGAGAATTTATTTCGTGGGGATTGCCGCTGGTTTTCTATGGTTCCAGGCACCAAATTCACCATCAAAGCAGCTCCATGGTTGAGGAACCGCTTGACCCATTCTCGCTTGTTTCCGATGAGCTGTCGATTATTGCAAACAGGTTGCGGGCAATGGTAGTTGCTGAGGTCCCTAAGCTTGCCTCTGCTGCTGAGTACTTATTTAAAATGGGAGTGGAAGGAAAGAGGTTTCGTCCCACGGTCTTATTGTTGATGTCAACCGCTTTGAATATCACTGTACCTGAACCTCCTACGGAACTGCAAGAGGCTTTGTCAACAGAGCTACGCGCAAGGCAACAATGTATAGCAGAAGTGACAGAGATGATTCATGTGGCAAGCCTTCTACATGATGATGTATTGGATGATGCAGACACAAGGCGTGGTGTTGGTTCATTAAATTGTATAATGGGAAATAAGTTAGCTGTTTTAGCAGGGGATTTTCTGCTTTCCCGAGCATGTGTCGCACTTGCCTCCTTGAGAAACACAGAGGTTGTATCATTACTGTCAACAGTTGTTGAGCATCTTGTGACAGGTGAAACCATGCAAATGACTACAAGATCTAGATCAACGTTCATGGAATATTATATACAAAAGACTTATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAAGCAATTGCCATTCTTGCTGGGCATACAACCGAAGTTGCTATGTTGGCTTATGAGTATGGAAAAAATCTGGGATTGGCATTTCAATTAATAGATGACGTTCTTGATTTTATGGGCACATCAGCTTCACTTGGAAAGGGCTCTTTATCCGACATCCGCCATGGCATCATAACTGCTCCAATATTGTTTGCCATGGAAGAGTTTCCTCAGTTGCGTACAGTTGTTGAACAGGGCCTTGATAACAACCCTGCAAATATTGAACTCGCTCTCGACTACCTAGGTAGGAGCCGTGGACTACATATGACAAGGGAGCTAGCCACAAAACATGCAAACCTTGCTGCAGCAGCAATCGAATCTCTGCCCGAGAGCGAAGACGAGAATGTCAGAAAATCAAGGAGGGCACTCCTAGATCTCACCCAGGTAGTCATTACAAGAACCAAATGA

Protein Analysis

423

Amino Acids

46.68

Weight (kDa)

6.28

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 204
AccII CGCG 1 cut(s) 480
AciI CCGC 7 cut(s) 86, 102, 182, 245, 301, 414, 982
AclI AACGTT 1 cut(s) 761
AcsI RAATTY 2 cut(s) 161, 210
AfaI GTAC 3 cut(s) 350, 432, 1042
AfeI AGCGCT 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 78, 79
AgsI TTSAA 7 cut(s) 32, 46, 421, 816, 911, 1052, 1085
AjnI CCWGG 2 cut(s) 200, 1242
AluBI AGCT 8 cut(s) 42, 228, 277, 331, 475, 614, 950, 1138
AluI AGCT 8 cut(s) 42, 228, 277, 331, 475, 614, 950, 1138
Ama87I CYCGRG 3 cut(s) 12, 642, 1187
Aor51HI AGCGCT 1 cut(s) 109
AoxI GGCC 1 cut(s) 1057
ApeKI GCWGC 6 cut(s) 39, 225, 341, 1163, 1166, 1169
ApoI RAATTY 2 cut(s) 161, 210
AseI ATTAAT 1 cut(s) 914
Asp700I GAANNNNTTC 1 cut(s) 1026
AspA2I CCTAGG 1 cut(s) 1102
AspLEI GCGC 2 cut(s) 110, 482
AspS9I GGNCC 3 cut(s) 82, 322, 1057
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 206, 737, 1231
AsuNHI GCTAGC 1 cut(s) 1138
AvaI CYCGRG 3 cut(s) 12, 642, 1187
AvaII GGWCC 2 cut(s) 82, 322
AvrII CCTAGG 1 cut(s) 1102
BaeGI GKGCMC 2 cut(s) 944, 1228
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 968
BbsI GAAGAC 1 cut(s) 1203
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 6 cut(s) 51, 237, 328, 1150, 1178, 1181
BccI CCATC 2 cut(s) 81, 225
BceAI ACGGC 1 cut(s) 1098
BciT130I CCWGG 2 cut(s) 202, 1244
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 4 cut(s) 753, 1103, 1139, 1232
BfmI CTRYAG 1 cut(s) 1164
BfoI RGCGCY 1 cut(s) 111
BglII AGATCT 2 cut(s) 749, 1234
BisI GCNGC 8 cut(s) 40, 102, 182, 226, 342, 1164, 1167, 1170
BlnI CCTAGG 1 cut(s) 1102
BlsI GCNGC 8 cut(s) 41, 103, 183, 227, 343, 1165, 1168, 1171
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 3 cut(s) 80, 202, 1244
Bme18I GGWCC 2 cut(s) 82, 322
BmeT110I CYCGRG 3 cut(s) 12, 642, 1187
BmgT120I GGNCC 3 cut(s) 82, 322, 1057
BmiI GGNNCC 7 cut(s) 83, 84, 199, 206, 243, 324, 1112
BmrFI CCNGG 3 cut(s) 80, 202, 1244
BmsI GCATC 4 cut(s) 547, 721, 812, 999
BmtI GCTAGC 1 cut(s) 1142
BpiI GAAGAC 1 cut(s) 1203
Bpu10I CCTNAGC 2 cut(s) 318, 327
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 754
BsaJI CCNNGG 7 cut(s) 231, 390, 985, 1017, 1102, 1114, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 79
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 754
BseBI CCWGG 2 cut(s) 202, 1244
BseDI CCNNGG 7 cut(s) 231, 390, 985, 1017, 1102, 1114, 1242
BseGI GGATG 2 cut(s) 559, 978
BseJI GATNNNNATC 1 cut(s) 754
BseLI CCNNNNNNNGG 2 cut(s) 78, 79
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 4 cut(s) 116, 309, 336, 1046
BseSI GKGCMC 2 cut(s) 944, 1228
BseXI GCAGC 6 cut(s) 51, 237, 328, 1150, 1178, 1181
BseYI CCCAGC 1 cut(s) 845
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 1 cut(s) 1059
BshNI GGYRCC 1 cut(s) 204
BsiHKCI CYCGRG 3 cut(s) 12, 642, 1187
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 3 cut(s) 95, 308, 372
BslI CCNNNNNNNGG 2 cut(s) 78, 79
BsmFI GGGAC 3 cut(s) 95, 308, 372
BsnI GGCC 1 cut(s) 1059
BsoBI CYCGRG 3 cut(s) 12, 642, 1187
Bsp1286I GDGCHC 3 cut(s) 944, 968, 1228
Bsp143I GATC 3 cut(s) 749, 755, 1234
Bsp19I CCATGG 3 cut(s) 231, 985, 1017
BspACI CCGC 7 cut(s) 86, 102, 182, 245, 301, 414, 982
BspANI GGCC 1 cut(s) 1059
BspCNI CTCAG 4 cut(s) 117, 310, 337, 1045
BspFNI CGCG 1 cut(s) 480
BspLI GGNNCC 7 cut(s) 83, 84, 199, 206, 243, 324, 1112
BspMAI CTGCAG 1 cut(s) 1168
BspOI GCTAGC 1 cut(s) 1142
BspT107I GGYRCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 7 cut(s) 231, 390, 985, 1017, 1102, 1114, 1242
BssMI GATC 3 cut(s) 749, 755, 1234
BssT1I CCWWGG 4 cut(s) 231, 985, 1017, 1102
Bst2UI CCWGG 2 cut(s) 202, 1244
Bst4CI ACNGT 6 cut(s) 93, 394, 430, 696, 703, 1045
Bst6I CTCTTC 1 cut(s) 1017
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstC8I GCNNGC 5 cut(s) 106, 303, 333, 529, 1140
BstDEI CTNAG 5 cut(s) 125, 318, 327, 345, 1032
BstDSI CCRYGG 5 cut(s) 231, 390, 985, 1017, 1114
BstF5I GGATG 2 cut(s) 559, 978
BstFNI CGCG 1 cut(s) 480
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 482
BstKTI GATC 3 cut(s) 752, 758, 1237
BstMBI GATC 3 cut(s) 749, 755, 1234
BstMWI GCNNNNNNNGC 8 cut(s) 107, 341, 620, 653, 842, 872, 1160, 1169
BstNI CCWGG 2 cut(s) 202, 1244
BstNSI RCATGY 2 cut(s) 651, 1154
BstSCI CCNGG 3 cut(s) 78, 200, 1242
BstSFI CTRYAG 1 cut(s) 1164
BstSLI GKGCMC 2 cut(s) 944, 1228
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 6 cut(s) 51, 237, 328, 1150, 1178, 1181
BstV2I GAAGAC 1 cut(s) 1203
BstX2I RGATCY 2 cut(s) 749, 1234
BstYI RGATCY 2 cut(s) 749, 1234
BsuRI GGCC 1 cut(s) 1059
BtgI CCRYGG 5 cut(s) 231, 390, 985, 1017, 1114
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 559, 978
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 5 cut(s) 106, 303, 333, 529, 1140
CfoI GCGC 2 cut(s) 110, 482
Cfr13I GGNCC 3 cut(s) 82, 322, 1057
Csp6I GTAC 3 cut(s) 349, 431, 1041
CviAII CATG 9 cut(s) 232, 521, 539, 648, 733, 766, 986, 1018, 1151
CviQI GTAC 3 cut(s) 349, 431, 1041
DdeI CTNAG 5 cut(s) 125, 318, 327, 345, 1032
DpnI GATC 3 cut(s) 751, 757, 1236
DpnII GATC 3 cut(s) 749, 755, 1234
DraI TTTAAA 1 cut(s) 358
DrdI GACNNNNNNGTC 1 cut(s) 1205
DseDI GACNNNNNNGTC 1 cut(s) 1205
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
EciI GGCGGA 1 cut(s) 971
Eco130I CCWWGG 4 cut(s) 231, 985, 1017, 1102
Eco24I GRGCYC 1 cut(s) 968
Eco47I GGWCC 2 cut(s) 82, 322
Eco47III AGCGCT 1 cut(s) 109
Eco88I CYCGRG 3 cut(s) 12, 642, 1187
EcoO109I RGGNCCY 3 cut(s) 82, 322, 1057
EcoRII CCWGG 2 cut(s) 200, 1242
EcoT14I CCWWGG 4 cut(s) 231, 985, 1017, 1102
EcoT38I GRGCYC 1 cut(s) 968
ErhI CCWWGG 4 cut(s) 231, 985, 1017, 1102
FaeI CATG 9 cut(s) 235, 524, 542, 651, 736, 769, 989, 1021, 1154
FaqI GGGAC 3 cut(s) 95, 308, 372
FatI CATG 9 cut(s) 231, 520, 538, 647, 732, 765, 985, 1017, 1150
FauI CCCGC 2 cut(s) 93, 294
FauNDI CATATG 1 cut(s) 1125
Fnu4HI GCNGC 8 cut(s) 40, 102, 182, 226, 342, 1164, 1167, 1170
FokI GGATG 2 cut(s) 566, 965
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 8 cut(s) 40, 102, 182, 226, 342, 1164, 1167, 1170
FspBI CTAG 4 cut(s) 753, 1103, 1139, 1232
GlaI GCGC 2 cut(s) 109, 481
GluI GCNGC 8 cut(s) 40, 102, 182, 226, 342, 1164, 1167, 1170
GsaI CCCAGC 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 1 cut(s) 1059
HapII CCGG 1 cut(s) 79
HhaI GCGC 2 cut(s) 110, 482
Hin1II CATG 9 cut(s) 235, 524, 542, 651, 736, 769, 989, 1021, 1154
Hin6I GCGC 2 cut(s) 108, 480
HinP1I GCGC 2 cut(s) 108, 480
HincII GTYRAC 3 cut(s) 411, 468, 699
HindII GTYRAC 3 cut(s) 411, 468, 699
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 4 cut(s) 28, 131, 517, 1178
HpaII CCGG 1 cut(s) 79
HphI GGTGA 3 cut(s) 206, 737, 1231
Hpy166II GTNNAC 4 cut(s) 411, 468, 699, 1118
Hpy188I TCNGA 4 cut(s) 27, 271, 976, 1211
Hpy188III TCNNGA 4 cut(s) 642, 753, 929, 1094
Hpy8I GTNNAC 4 cut(s) 411, 468, 699, 1118
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 365, 542
HpyCH4III ACNGT 6 cut(s) 93, 394, 430, 696, 703, 1045
HpyCH4IV ACGT 2 cut(s) 761, 924
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 341, 620, 653, 842, 872, 1160, 1169
HpyF3I CTNAG 5 cut(s) 125, 318, 327, 345, 1032
HpySE526I ACGT 2 cut(s) 761, 924
Hsp92II CATG 9 cut(s) 235, 524, 542, 651, 736, 769, 989, 1021, 1154
HspAI GCGC 2 cut(s) 108, 480
KflI GGGWCCC 1 cut(s) 82
Kzo9I GATC 3 cut(s) 749, 755, 1234
LmnI GCTCC 4 cut(s) 233, 1006, 1110, 1135
Lsp1109I GCAGC 6 cut(s) 51, 237, 328, 1150, 1178, 1181
LweI GCATC 4 cut(s) 547, 721, 812, 999
MaeI CTAG 4 cut(s) 753, 1103, 1139, 1232
MaeII ACGT 2 cut(s) 761, 924
MaeIII GTNAC 2 cut(s) 505, 718
MalI GATC 3 cut(s) 751, 757, 1236
MboI GATC 3 cut(s) 749, 755, 1234
MboII GAAGA 3 cut(s) 154, 1034, 1208
MfeI CAATTG 2 cut(s) 119, 831
MflI RGATCY 2 cut(s) 749, 1234
MhlI GDGCHC 3 cut(s) 944, 968, 1228
MluCI AATT 6 cut(s) 119, 161, 210, 589, 831, 911
MmeI TCCRAC 1 cut(s) 999
MroXI GAANNNNTTC 1 cut(s) 1026
MseI TTAA 3 cut(s) 357, 587, 914
MslI CAYNNNNRTG 2 cut(s) 543, 737
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 80, 202, 1244
MunI CAATTG 2 cut(s) 119, 831
MvaI CCWGG 2 cut(s) 202, 1244
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 8 cut(s) 107, 341, 620, 653, 842, 872, 1160, 1169
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 3 cut(s) 231, 985, 1017
NdeI CATATG 1 cut(s) 1125
NdeII GATC 3 cut(s) 749, 755, 1234
NheI GCTAGC 1 cut(s) 1138
NlaIII CATG 9 cut(s) 235, 524, 542, 651, 736, 769, 989, 1021, 1154
NlaIV GGNNCC 7 cut(s) 83, 84, 199, 206, 243, 324, 1112
NmuCI GTSAC 2 cut(s) 505, 718
NspI RCATGY 2 cut(s) 651, 1154
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 4 cut(s) 28, 131, 517, 1178
PkrI GCNGC 8 cut(s) 41, 103, 183, 227, 343, 1165, 1168, 1171
PpuMI RGGWCCY 2 cut(s) 82, 322
PshBI ATTAAT 1 cut(s) 914
Psp1406I AACGTT 1 cut(s) 761
Psp5II RGGWCCY 2 cut(s) 82, 322
Psp6I CCWGG 2 cut(s) 200, 1242
PspFI CCCAGC 1 cut(s) 845
PspGI CCWGG 2 cut(s) 200, 1242
PspN4I GGNNCC 7 cut(s) 83, 84, 199, 206, 243, 324, 1112
PspPI GGNCC 3 cut(s) 82, 322, 1057
PspPPI RGGWCCY 2 cut(s) 82, 322
PstI CTGCAG 1 cut(s) 1168
PsuI RGATCY 2 cut(s) 749, 1234
RsaI GTAC 3 cut(s) 350, 432, 1042
RsaNI GTAC 3 cut(s) 349, 431, 1041
RseI CAYNNNNRTG 2 cut(s) 543, 737
SaqAI TTAA 3 cut(s) 357, 587, 914
SatI GCNGC 8 cut(s) 40, 102, 182, 226, 342, 1164, 1167, 1170
Sau3AI GATC 3 cut(s) 749, 755, 1234
Sau96I GGNCC 3 cut(s) 82, 322, 1057
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 80, 202, 1244
SduI GDGCHC 3 cut(s) 944, 968, 1228
SfaNI GCATC 4 cut(s) 547, 721, 812, 999
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 2 cut(s) 82, 322
SmiMI CAYNNNNRTG 2 cut(s) 543, 737
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 6 cut(s) 119, 161, 210, 589, 831, 911
SsiI CCGC 7 cut(s) 86, 102, 182, 245, 301, 414, 982
SspI AATATT 3 cut(s) 773, 1008, 1081
SspMI CTAG 4 cut(s) 753, 1103, 1139, 1232
StyD4I CCNGG 3 cut(s) 78, 200, 1242
StyI CCWWGG 4 cut(s) 231, 985, 1017, 1102
TaaI ACNGT 6 cut(s) 93, 394, 430, 696, 703, 1045
TaiI ACGT 2 cut(s) 764, 927
TaqI TCGA 4 cut(s) 134, 281, 1095, 1176
TasI AATT 6 cut(s) 119, 161, 210, 589, 831, 911
TatI WGTACW 1 cut(s) 348
TauI GCSGC 2 cut(s) 104, 184
TfiI GAWTC 4 cut(s) 28, 131, 517, 1178
Tru1I TTAA 3 cut(s) 357, 587, 914
Tru9I TTAA 3 cut(s) 357, 587, 914
TscAI CASTG 1 cut(s) 433
TseFI GTSAC 2 cut(s) 505, 718
TseI GCWGC 6 cut(s) 39, 225, 341, 1163, 1166, 1169
Tsp45I GTSAC 2 cut(s) 505, 718
TspDTI ATGAA 3 cut(s) 509, 573, 754
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 82, 322
VspI ATTAAT 1 cut(s) 914
XapI RAATTY 2 cut(s) 161, 210
XbaI TCTAGA 1 cut(s) 752
XceI RCATGY 2 cut(s) 651, 1154
XmaJI CCTAGG 1 cut(s) 1102
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 4 cut(s) 753, 1103, 1139, 1232
ZrmI AGTACT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.