Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10612032 .. 10618572

Gene Structure 6541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG113200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATCTTTTCTCGGGGATTTTCTAGGCTTCCAAGAAACAGCTTCAATGGGCTTCTGTGTCGGTGTTTGCTCTCTAACCGACCAGACCCAAATCAATTCTTCGTCTCCAAAGCTTATTCTCAGTCTCTAGGGGATTCGACCCAGAAGATTTTGGGTTGCAGAGAGTTTTGGTCATCTGGGTTGCCTACTTTCCCCGGCTCTTTAACTTCTAGGCATCAAATTCACCACCAAATTAGCTCCATAGTTGAGGAACCACAAGACCCATTCTCGCTTGTTTCTGATGAGCTATCACTTATTGCTGACAGGTTGCGAGCGATGGTAGTTGCTAAGGTTCCTAAGCTGGCCTCTGCTGCTGAGTACTTCTTTAAAATGGGGATCGAAGGAAAGAGGTTTCGTCCTACGGTCTTATTATTGATGTCAACTGCACTGAATGGCAGAATACCTGAGACTCCTACACAACATGAACCCCCTACGCGATTGGAAGATGCTTTCCCAACAGAATTGCGGGCAAGACAACAATGTATAGCAGAAGTGACAGAGATGATTCATGTGGCAAGCCTCCTACATGATGATGTATTGGATGATGCAGACACGAGACGTGGTGTTGATTCATTAAATTCCGTAATGGGAAATAAGTTAGCTGTATTAGCAGGAGATTTTCTGCTCTCTCGAGCTTGTGTTGCACTTGCCTCTCTAAGAAACACAGAGGTGGTATCGTTACTATCAACAGTTGTAGAGCATCTTGTTACAGGTGAAACTATGCAAATGACTACTGCAGCCGATCAACGTTGTAGCATGGAATATTATATAGAGAAGACGTATTACAAGACTGCATCATTGATTTCAAACAGTTGCAAGGCAGTTGCTATTCTTGCTGGGCATACAACAGAAGTTGCGATGTTGGCTTTTGACTATGGAAAAAATCTGGTTTGTGAATTCTTTTCTTTGTCTAATTCCGTATTTGTTTTCGTTTATCCAGAGGAGGAAGCTATCTTTTTGAGATCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

336

Amino Acids

37.37

Weight (kDa)

5.94

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	113 - 310	1.3e-45	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1009
AccII	CGCG	1 cut(s)	475
AciI	CCGC	1 cut(s)	505
AclI	AACGTT	1 cut(s)	787
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	219, 616, 935
AfaI	GTAC	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	46, 846
AjiI	CACGTC	1 cut(s)	599
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	8 cut(s)	42, 113, 237, 286, 340, 641, 674, 989
AluI	AGCT	8 cut(s)	42, 113, 237, 286, 340, 641, 674, 989
Alw26I	GTCTC	4 cut(s)	109, 129, 440, 589
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	2 cut(s)	12, 669
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	350, 776
ApoI	RAATTY	3 cut(s)	219, 616, 935
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	215, 764
AvaI	CYCGRG	2 cut(s)	12, 669
BarI	GAAGNNNNNNTAC	2 cut(s)	806, 838
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	821
BbvI	GCAGC	2 cut(s)	337, 788
BccI	CCATC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	4 cut(s)	109, 129, 440, 589
BfaI	CTAG	3 cut(s)	24, 128, 210
BfmI	CTRYAG	1 cut(s)	774
BglII	AGATCT	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	351, 777
BlsI	GCNGC	2 cut(s)	352, 778
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	2 cut(s)	12, 669
BmgBI	CACGTC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	252, 333
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	5 cut(s)	223, 475, 574, 748, 842
BpiI	GAAGAC	1 cut(s)	821
Bpu10I	CCTNAGC	2 cut(s)	327, 336
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	134, 345, 435
BseRI	GAGGAG	1 cut(s)	995
BseXI	GCAGC	2 cut(s)	337, 788
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	344
BsiHKCI	CYCGRG	2 cut(s)	12, 669
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	4 cut(s)	109, 129, 440, 589
BsmBI	CGTCTC	2 cut(s)	109, 589
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	12, 669
Bsp143I	GATC	4 cut(s)	3, 375, 781, 1001
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	3 cut(s)	133, 346, 436
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	252, 333
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	4 cut(s)	3, 375, 781, 1001
BssSI	CACGAG	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	403, 730, 851
BstC8I	GCNNGC	4 cut(s)	312, 342, 507, 556
BstDEI	CTNAG	6 cut(s)	120, 327, 336, 354, 444, 695
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	475
BstKTI	GATC	4 cut(s)	6, 378, 784, 1004
BstMAI	GTCTC	4 cut(s)	109, 129, 440, 589
BstMBI	GATC	4 cut(s)	3, 375, 781, 1001
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 647, 680, 872, 902
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	337, 788
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	1001
BsuRI	GGCC	1 cut(s)	344
BtgZI	GCGATG	2 cut(s)	329, 911
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	4 cut(s)	312, 342, 507, 556
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	461, 548, 566, 796
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	6 cut(s)	120, 327, 336, 354, 444, 695
DpnI	GATC	4 cut(s)	5, 377, 783, 1003
DpnII	GATC	4 cut(s)	3, 375, 781, 1001
DraI	TTTAAA	1 cut(s)	367
Eco88I	CYCGRG	2 cut(s)	12, 669
EcoRI	GAATTC	1 cut(s)	935
Esp3I	CGTCTC	2 cut(s)	109, 589
FaeI	CATG	4 cut(s)	464, 551, 569, 799
FatI	CATG	4 cut(s)	460, 547, 565, 795
FauI	CCCGC	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	351, 777
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	351, 777
FspBI	CTAG	3 cut(s)	24, 128, 210
GluI	GCNGC	2 cut(s)	351, 777
GsaI	CCCAGC	1 cut(s)	879
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	4 cut(s)	464, 551, 569, 799
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	4 cut(s)	134, 448, 544, 608
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	215, 764
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	2 cut(s)	669, 977
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	3 cut(s)	403, 730, 851
HpyCH4IV	ACGT	3 cut(s)	598, 787, 818
HpyCH4V	TGCA	8 cut(s)	159, 425, 587, 683, 763, 776, 833, 855
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 647, 680, 872, 902
HpyF3I	CTNAG	6 cut(s)	120, 327, 336, 354, 444, 695
HpySE526I	ACGT	3 cut(s)	598, 787, 818
Hsp92II	CATG	4 cut(s)	464, 551, 569, 799
Kzo9I	GATC	4 cut(s)	3, 375, 781, 1001
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	337, 788
LweI	GCATC	5 cut(s)	223, 475, 574, 748, 842
MaeI	CTAG	3 cut(s)	24, 128, 210
MaeII	ACGT	3 cut(s)	598, 787, 818
MaeIII	GTNAC	3 cut(s)	532, 717, 745
MalI	GATC	4 cut(s)	5, 377, 783, 1003
MboI	GATC	4 cut(s)	3, 375, 781, 1001
MboII	GAAGA	4 cut(s)	91, 157, 494, 826
MflI	RGATCY	1 cut(s)	1001
MluCI	AATT	7 cut(s)	95, 219, 231, 500, 616, 935, 952
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	8 cut(s)	241, 355, 381, 569, 700, 700, 973, 976
MseI	TTAA	3 cut(s)	203, 366, 614
MslI	CAYNNNNRTG	2 cut(s)	570, 707
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	350, 647, 680, 872, 902
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	3, 375, 781, 1001
NlaIII	CATG	4 cut(s)	464, 551, 569, 799
NlaIV	GGNNCC	2 cut(s)	252, 333
NmuCI	GTSAC	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	707
PaeR7I	CTCGAG	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	134, 544, 608
PkrI	GCNGC	2 cut(s)	352, 778
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PsiI	TTATAA	1 cut(s)	1009
Psp1406I	AACGTT	1 cut(s)	787
PspFI	CCCAGC	1 cut(s)	875
PspN4I	GGNNCC	2 cut(s)	252, 333
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	1001
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	570, 707
SaqAI	TTAA	3 cut(s)	203, 366, 614
SatI	GCNGC	2 cut(s)	351, 777
Sau3AI	GATC	4 cut(s)	3, 375, 781, 1001
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	195
SfaNI	GCATC	5 cut(s)	223, 475, 574, 748, 842
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	570, 707
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	7 cut(s)	95, 219, 231, 500, 616, 935, 952
SsiI	CCGC	1 cut(s)	505
SspI	AATATT	1 cut(s)	803
SspMI	CTAG	3 cut(s)	24, 128, 210
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	403, 730, 851
TaiI	ACGT	3 cut(s)	601, 790, 821
TaqI	TCGA	3 cut(s)	137, 378, 670
TasI	AATT	7 cut(s)	95, 219, 231, 500, 616, 935, 952
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	134, 544, 608
Tru1I	TTAA	3 cut(s)	203, 366, 614
Tru9I	TTAA	3 cut(s)	203, 366, 614
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	350, 776
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	477, 536, 600
TspGWI	ACGGA	2 cut(s)	610, 946
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	3 cut(s)	219, 616, 935
XhoI	CTCGAG	1 cut(s)	669
XspI	CTAG	3 cut(s)	24, 128, 210
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.