Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Reverse (-)

83761620 .. 83767631

Gene Structure 6012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCACAAAGCTACAATATTTCGGGTAGGGTGACTCGGGACTCTCTCGAGGCTACAACAAGTAACACAAGACACAATTCTCATCAACTAATCTCTACGATTACTCAAGTCTCTCCGAAGAACCCGTCTCTTTCTCTTACCGGTGATCACACTCTAGTCCTAGTCTTCTCGGGAGCCGATCGTCGTTGCCACCAAACCCTTTGTCAAAGTGCTTTGGTCCTAGTCTCCTTGGGAGCCGACCGTAGTACCGCGACCACAACGGTTACGAAACCAGCCAAGCAAGGGGCATTATCACTGCTCCAATATTGTTTGCCCTGGAAGATCGAGTTCCCTCAGTTGGGTGCAGTTGTTGAAAAAGGATTTGACAATCCTGCAAATATTGAGATCGCTCTTGACTACCTTGCTAAGACTAATGGTATACAGAGGACAAGGGATCTAGCAAGAAAGCATGCAAACCTTGCTGCAAAGGCAATCAAATCTCTGCCTGAGAGCGAGGACGAAAGCGTAAGAAGATCAAGGATGGCGCTCCTAGATCTCACCAACATAGTCCTCACAAGAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

188

Amino Acids

20.57

Weight (kDa)

9.58

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	418
AccII	CGCG	1 cut(s)	251
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	3 cut(s)	282, 337, 338
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	115, 132, 229
AlwI	GGATC	1 cut(s)	441
Ama87I	CYCGRG	3 cut(s)	36, 47, 169
ApeKI	GCWGC	1 cut(s)	461
ArsI	GACNNNNNNTTYG	4 cut(s)	110, 142, 187, 219
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	43, 155, 529
AvaI	CYCGRG	3 cut(s)	36, 47, 169
AvaII	GGWCC	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	1 cut(s)	514
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	115, 132, 229
BfaI	CTAG	5 cut(s)	155, 161, 221, 437, 530
BfoI	RGCGCY	1 cut(s)	527
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	3 cut(s)	36, 47, 169
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	175, 235
BmrFI	CCNGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	228, 314
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 337, 338
Bse118I	RCCGGY	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	228, 314
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	282, 337, 338
BseMII	CTCAG	2 cut(s)	347, 477
BseXI	GCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	251
Bsh1285I	CGRYCG	2 cut(s)	181, 241
BshTI	ACCGGT	1 cut(s)	140
BsiEI	CGRYCG	2 cut(s)	181, 241
BsiHKCI	CYCGRG	3 cut(s)	36, 47, 169
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	282, 337, 338
BsmAI	GTCTC	3 cut(s)	115, 132, 229
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	53
BsoBI	CYCGRG	3 cut(s)	36, 47, 169
Bsp143I	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
BspACI	CCGC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	346, 478
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	2 cut(s)	175, 235
BspPI	GGATC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	228, 314
BssMI	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
BssNAI	GTATAC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	228
Bst1107I	GTATAC	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	242, 262
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	333, 405, 486
BstF5I	GGATG	1 cut(s)	525
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	7 cut(s)	148, 181, 324, 387, 436, 515, 535
BstMAI	GTCTC	3 cut(s)	115, 132, 229
BstMBI	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
BstMCI	CGRYCG	2 cut(s)	181, 241
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 467
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	314
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	2 cut(s)	433, 532
BstYI	RGATCY	2 cut(s)	433, 532
BstZ17I	GTATAC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	246
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	5 cut(s)	12, 53, 176, 236, 275
CviKI_1	RGCY	5 cut(s)	12, 53, 176, 236, 275
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	3 cut(s)	333, 405, 486
DpnI	GATC	7 cut(s)	147, 180, 323, 386, 435, 514, 534
DpnII	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	217
Eco88I	CYCGRG	3 cut(s)	36, 47, 169
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	1 cut(s)	452
FaiI	YATR	3 cut(s)	419, 450, 545
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	462
FspBI	CTAG	5 cut(s)	155, 161, 221, 437, 530
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	527
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HinfI	GANTC	2 cut(s)	34, 41
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	43, 155, 529
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	4 cut(s)	38, 47, 171, 392
Hpy8I	GTNNAC	1 cut(s)	419
Hpy99I	CGWCG	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	242, 262
HpyCH4V	TGCA	4 cut(s)	344, 374, 452, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 467
HpyF3I	CTNAG	3 cut(s)	333, 405, 486
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
LmnI	GCTCC	4 cut(s)	173, 233, 303, 531
LpnPI	CCDG	6 cut(s)	154, 285, 301, 328, 384, 498
Lsp1109I	GCAGC	1 cut(s)	448
MaeI	CTAG	5 cut(s)	155, 161, 221, 437, 530
MaeIII	GTNAC	4 cut(s)	3, 31, 62, 262
MalI	GATC	7 cut(s)	147, 180, 323, 386, 435, 514, 534
MboI	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
MboII	GAAGA	4 cut(s)	130, 157, 331, 522
MflI	RGATCY	2 cut(s)	433, 532
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	28, 35
MnlI	CCTC	5 cut(s)	43, 342, 417, 487, 560
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	458, 467
NdeII	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	175, 235
NmuCI	GTSAC	2 cut(s)	3, 31
NspI	RCATGY	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	47
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	463
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	28, 35
PpsI	GAGTC	2 cut(s)	28, 35
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	175, 235
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	433, 532
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	7 cut(s)	145, 178, 321, 384, 433, 512, 532
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	28, 35
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	3 cut(s)	14, 402, 459
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 105
SmoI	CTYRAG	2 cut(s)	47, 105
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	249
SspI	AATATT	3 cut(s)	19, 305, 379
SspMI	CTAG	5 cut(s)	155, 161, 221, 437, 530
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	242, 262
TaqI	TCGA	2 cut(s)	48, 324
TasI	AATT	1 cut(s)	76
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	3, 31
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	3, 31
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	452
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	5 cut(s)	155, 161, 221, 437, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.