Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10299262 .. 10300343

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAATTCGATATTCATTGCAGCAAGGCATATTACATGGAAAAAACATACTACAGGAATGCATCATCGATTTCAAATTCTTGCAAGGCACTGGCCATTCTTGCTGGGCATACAACACAAGTTGCCGAGATGGCTTTTGACTATGGAAAGAATCTGGGATTGGCGTTTCAATTGATAGACGATGTTCTTGATTTTTCGGGCACATCATCAACATCTCTTGGAAAGGGCTCATTATCTGACATCCGTCATGGCATTATCACTGCTCCAATATTGTTTGCCCTGGAAGAGTTCCCTCAGTTGGGTGCAGTTGTTGAAAAAGGATTTGACAATCCTGCAAATATGGAGATCGCTCTTGACTACCTTGCTAAGACTAATGGTATACAGAGGACAAGGGATCTAGCAAGAAAGCATGCAAACCTTGCTGCAAAGGCAATCAAATCTCTGCCTGAGAGTGAGGATGAAAGCATAAGAAGATCAAGGATGGCGCTCCGAGATCTCACCAACATAGTCCTCACACGAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

175

Amino Acids

19.31

Weight (kDa)

8.5

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	8 - 118	3.8e-23	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	5, 76
AfiI	CCNNNNNNNGG	2 cut(s)	298, 299
AgsI	TTSAA	3 cut(s)	75, 170, 314
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	21, 422
ApoI	RAATTY	2 cut(s)	5, 76
AspLEI	GCGC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	33, 409
BccI	CCATC	2 cut(s)	124, 475
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	2 cut(s)	22, 423
BlsI	GCNGC	2 cut(s)	23, 424
Bme1390I	CCNGG	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 299
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	240, 463, 486
BseLI	CCNNNNNNNGG	2 cut(s)	298, 299
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	308, 438
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	33, 409
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	298, 299
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	203, 230
Bsp143I	GATC	4 cut(s)	345, 394, 473, 493
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	307, 439
BspDI	ATCGAT	1 cut(s)	68
BspPI	GGATC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	4 cut(s)	345, 394, 473, 493
BssNAI	GTATAC	1 cut(s)	380
Bst1107I	GTATAC	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	294, 366, 447
BstF5I	GGATG	3 cut(s)	240, 463, 486
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	4 cut(s)	348, 397, 476, 496
BstMBI	GATC	4 cut(s)	345, 394, 473, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 131, 419, 428
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	413
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	33, 409
BstX2I	RGATCY	2 cut(s)	394, 493
BstYI	RGATCY	2 cut(s)	394, 493
BstZ17I	GTATAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	240, 463, 486
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	89, 258
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	487
ClaI	ATCGAT	1 cut(s)	68
CviAII	CATG	3 cut(s)	37, 248, 410
CviJI	RGCY	3 cut(s)	95, 134, 228
CviKI_1	RGCY	3 cut(s)	95, 134, 228
DdeI	CTNAG	3 cut(s)	294, 366, 447
DpnI	GATC	4 cut(s)	347, 396, 475, 495
DpnII	GATC	4 cut(s)	345, 394, 473, 493
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	3 cut(s)	40, 251, 413
FatI	CATG	3 cut(s)	36, 247, 409
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	22, 423
FokI	GGATG	3 cut(s)	227, 470, 493
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	22, 423
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	2 cut(s)	22, 423
GsaI	CCCAGC	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	40, 251, 413
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	238, 491
Hpy188III	TCNNGA	2 cut(s)	188, 353
Hpy8I	GTNNAC	1 cut(s)	380
HpyCH4V	TGCA	7 cut(s)	21, 62, 84, 305, 335, 413, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 131, 419, 428
HpyF3I	CTNAG	3 cut(s)	294, 366, 447
Hsp92II	CATG	3 cut(s)	40, 251, 413
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	4 cut(s)	345, 394, 473, 493
LmnI	GCTCC	2 cut(s)	268, 492
LpnPI	CCDG	8 cut(s)	40, 77, 90, 140, 266, 293, 345, 459
Lsp1109I	GCAGC	2 cut(s)	33, 409
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	398
MalI	GATC	4 cut(s)	347, 396, 475, 495
MboI	GATC	4 cut(s)	345, 394, 473, 493
MboII	GAAGA	2 cut(s)	296, 483
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	2 cut(s)	394, 493
MhlI	GDGCHC	2 cut(s)	203, 230
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	3 cut(s)	5, 76, 170
MluNI	TGGCCA	1 cut(s)	95
MnlI	CCTC	4 cut(s)	303, 378, 448, 521
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	101, 131, 419, 428
NdeII	GATC	4 cut(s)	345, 394, 473, 493
NlaIII	CATG	3 cut(s)	40, 251, 413
NmeAIII	GCCGAG	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	413
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	23, 424
PshAI	GACNNNNGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	394, 493
SatI	GCNGC	2 cut(s)	22, 423
Sau3AI	GATC	4 cut(s)	345, 394, 473, 493
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	203, 230
SetI	ASST	2 cut(s)	363, 420
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	413
Sse9I	AATT	3 cut(s)	5, 76, 170
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	279
TaqI	TCGA	2 cut(s)	9, 68
TasI	AATT	3 cut(s)	5, 76, 170
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	2 cut(s)	96, 265
TseI	GCWGC	2 cut(s)	21, 422
TspDTI	ATGAA	3 cut(s)	5, 17, 474
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	2 cut(s)	96, 265
XapI	RAATTY	2 cut(s)	5, 76
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.