Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028154.1

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2408

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028154.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 661 bp

atgatattttctcggggattttctaggcttccaagaaacagcttcaatgggcttctgtgtcgatgtttgctctctaaccgaccagacccaaatccattcttcgtctccaaggcttattctcaggctataggggattcgacccagaagattttgggttgcagagagttttggtcttctgggttgcctactttccctggctctttaacttctaggcatcaaattcaccaccaaattagctccatagttgaggaaccacaagacccattctcgcttgtttctgatgagctatcacttattgctgacaggttgcgagcgatggtagttgctaaggttcctaagctggcctctgctgctgagtacttctttaaaatgggggtcgaaggaaagaggtttcgtcctacggtcttattattgatgtcaacagcactgaatggcagaatacctgagcctcctacacaacatgaaccccctatgcgattggaagatgctttcccaacggaattgcgggcaagacaacaatgtatagcagaagtgacagagatgattcatgtggcaagcctcctacatgatgatgtattggatgaagcagacacaagacgtggtgttggttcgttaaattctgtaatgggaaataaggtgtacttttgcttccctgaagttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

220

Amino Acids

24.64

Weight (kDa)

7.01

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	219, 616
AfaI	GTAC	2 cut(s)	359, 641
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	42, 237, 286, 340
AluI	AGCT	4 cut(s)	42, 237, 286, 340
Alw26I	GTCTC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	219, 616
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	12
BarI	GAAGNNNNNNTAC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	24, 210
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	12
BmgBI	CACGTC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	252, 333
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	223, 475
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	3 cut(s)	327, 336, 444
BsaJI	CCNNGG	2 cut(s)	108, 193
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	108, 193
BseGI	GGATG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	134, 345, 435
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	3 cut(s)	133, 346, 436
BspLI	GGNNCC	2 cut(s)	252, 333
BssECI	CCNNGG	2 cut(s)	108, 193
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	4 cut(s)	312, 342, 507, 556
BstDEI	CTNAG	5 cut(s)	120, 327, 336, 354, 444
BstF5I	GGATG	1 cut(s)	586
BstMAI	GTCTC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	4 cut(s)	312, 342, 507, 556
Csp6I	GTAC	2 cut(s)	358, 640
CviAII	CATG	3 cut(s)	461, 548, 566
CviQI	GTAC	2 cut(s)	358, 640
DdeI	CTNAG	5 cut(s)	120, 327, 336, 354, 444
DraI	TTTAAA	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	3 cut(s)	464, 551, 569
FaiI	YATR	7 cut(s)	128, 242, 462, 473, 524, 549, 567
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	3 cut(s)	460, 547, 565
FauI	CCCGC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	24, 210
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	464, 551, 569
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	134, 544
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	420, 640
Hpy188I	TCNGA	1 cut(s)	280
Hpy8I	GTNNAC	2 cut(s)	420, 640
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	5 cut(s)	120, 327, 336, 354, 444
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	3 cut(s)	464, 551, 569
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	9 cut(s)	96, 107, 155, 162, 180, 207, 289, 326, 456
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	223, 475
MaeI	CTAG	2 cut(s)	24, 210
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	532
MboII	GAAGA	4 cut(s)	91, 157, 165, 494
MluCI	AATT	4 cut(s)	219, 231, 500, 616
MnlI	CCTC	5 cut(s)	241, 355, 381, 459, 569
MseI	TTAA	3 cut(s)	203, 366, 614
MslI	CAYNNNNRTG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	464, 551, 569
NlaIV	GGNNCC	2 cut(s)	252, 333
NmuCI	GTSAC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	134, 544
PkrI	GCNGC	1 cut(s)	352
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	252, 333
RsaI	GTAC	2 cut(s)	359, 641
RsaNI	GTAC	2 cut(s)	358, 640
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	203, 366, 614
SatI	GCNGC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	195
SfaNI	GCATC	2 cut(s)	223, 475
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	4 cut(s)	219, 231, 500, 616
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	2 cut(s)	24, 210
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	61, 137, 378
TasI	AATT	4 cut(s)	219, 231, 500, 616
TatI	WGTACW	2 cut(s)	357, 639
TfiI	GAWTC	2 cut(s)	134, 544
Tru1I	TTAA	3 cut(s)	203, 366, 614
Tru9I	TTAA	3 cut(s)	203, 366, 614
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	477, 536, 597
TspGWI	ACGGA	1 cut(s)	512
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	219, 616
XspI	CTAG	2 cut(s)	24, 210
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.