Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10216990 .. 10223714

Gene Structure 6725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGATATATTCCCGGGGATTTTCTAGGCTTCCTAGAAATAGCTTCAATGGGTTATGTCGGTGTTTGCTCTCTAATCGACCAGACCCACATCAGTTCTTCGTCTCCAAAGCCTTTTCTCAGTCTCCAGGGGATTCGACCCAGAGGATTTTGGGTTGCAGAGAGTTTTGGCCTGCTTTCCCTGGTTCTTTAATTTCCAGGCATCAAATTCACCACCAAAGTAGCTCCATAGTTGAGGAACCACAAGACCCATTCTTACTTGTTTCTGATGAGCTATCACTTATTGCTGACCGGTTACGAGCAATGGTTGTTGCCAAGGTTCCCAAGCTCGCCTCTGCTGCTGAGTACTTCTTTAAAATGGGGGTGGAAGGAAAAAGGTTTCGTCCAACGGTCTTATTATTAATGTCAACAGCTCTGAATGTCAGTATACCTGAACCTCCTACACGATCAGAATCTCCTATGCGATTGGGAGATGCTTTCCCAACGGAATTGCGTGCAAGACAGCAATGTATAGCAGAAGTGACAGAGATGATTCATGTGGCAAGCCTCTTACATGATGATGTATTGGATGATGCAGACACAAGACGCGGCGTTGGTTCATTAAATTCTGTGATGGGAAATAAGCTAGCTGTATTAGCAGGAGATTTTCTACTCTCTCGAGCTTGTGTTGCACTTGCCTCTCTAAGAAACACAGAGGTTGTATCATTACTATCAACAGTTGTAGAGCATCTTGTAACAGGTGAAACCATGCAAATGACTACTGCTGCTGATCAACGTTGTAGCATGGAGTATTATATAGAAAAGACATATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAGGCAATTGCCATTCTTGCTGGGCATACAACAGAAGTTGCCATGATGGCTTATGAGTATGGAAAGAATCTGGGTTTGGCATTCCAGCTGATAGATGATGTTCTTGATTTTACGGGCACGTCAGCATCTCTTGGAAAGGGCTCTATATCTGACATCCGCCATGGCATCATTACTGCTCCAATATTGTTTGCCATGGAAGAGTTCCCTCAGTTGCGTGCAGTTGTTGAACAGGGATTTGACAACCCTGCAAATATTGAGATTGCGCTTGACTACCTTGGCAAGAGTAATGGAATACAGAGGACAAGAGAGCTAGCAAGAAAACATGCAAACCTTGCTGCAGAGGCCATTGAATCCCTGCCCGAGAGTGAGGACGAAGATGTTAGAAGGTCAAGGAGGGCGCTTCTAGATCTCACCCATCTAGTCATTACAAGAACGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

426

Amino Acids

47.08

Weight (kDa)

6.15

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	108 - 370	6e-67	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	1 cut(s)	585
AciI	CCGC	2 cut(s)	585, 997
AclI	AACGTT	1 cut(s)	772
AcsI	RAATTY	2 cut(s)	204, 601
AfaI	GTAC	1 cut(s)	344
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	4 cut(s)	46, 831, 1067, 1190
AjiI	CACGTC	1 cut(s)	960
AjnI	CCWGG	3 cut(s)	124, 178, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
Alw26I	GTCTC	2 cut(s)	106, 126
Ama87I	CYCGRG	3 cut(s)	12, 654, 1199
AoxI	GGCC	2 cut(s)	167, 1182
ApeKI	GCWGC	3 cut(s)	335, 761, 1175
ApoI	RAATTY	2 cut(s)	204, 601
AseI	ATTAAT	1 cut(s)	398
AsiGI	ACCGGT	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	1105, 1240
AsuC2I	CCSGG	2 cut(s)	13, 14
AsuHPI	GGTGA	3 cut(s)	200, 749, 1243
AsuNHI	GCTAGC	2 cut(s)	622, 1150
AvaI	CYCGRG	3 cut(s)	12, 654, 1199
BaeGI	GKGCMC	1 cut(s)	959
BanII	GRGCYC	1 cut(s)	983
BbvI	GCAGC	3 cut(s)	322, 748, 1162
BccI	CCATC	3 cut(s)	604, 880, 1263
BciT130I	CCWGG	3 cut(s)	126, 180, 196
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	13, 14
BcoDI	GTCTC	2 cut(s)	106, 126
BfaI	CTAG	6 cut(s)	24, 33, 623, 1151, 1244, 1259
BfmI	CTRYAG	1 cut(s)	1176
BfoI	RGCGCY	1 cut(s)	1241
BglI	GCCNNNNNGGC	1 cut(s)	887
BglII	AGATCT	1 cut(s)	1246
BisI	GCNGC	4 cut(s)	336, 586, 762, 1176
BlsI	GCNGC	4 cut(s)	337, 587, 763, 1177
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	5 cut(s)	13, 14, 126, 180, 196
BmeT110I	CYCGRG	3 cut(s)	12, 654, 1199
BmgBI	CACGTC	1 cut(s)	960
BmiI	GGNNCC	2 cut(s)	237, 318
BmrFI	CCNGG	5 cut(s)	13, 14, 126, 180, 196
BmsI	GCATC	7 cut(s)	208, 460, 559, 733, 827, 974, 1014
BmtI	GCTAGC	2 cut(s)	626, 1154
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	13, 14
BsaBI	GATNNNNATC	1 cut(s)	448
BsaJI	CCNNGG	8 cut(s)	12, 13, 125, 178, 312, 1000, 1032, 1114
BsaWI	WCCGGW	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	288
Bse3DI	GCAATG	2 cut(s)	306, 509
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	3 cut(s)	126, 180, 196
BseDI	CCNNGG	8 cut(s)	12, 13, 125, 178, 312, 1000, 1032, 1114
BseGI	GGATG	2 cut(s)	571, 993
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	306, 509
BseMII	CTCAG	3 cut(s)	131, 330, 1061
BseSI	GKGCMC	1 cut(s)	959
BseXI	GCAGC	3 cut(s)	322, 748, 1162
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	1077
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	169, 1184
BshTI	ACCGGT	1 cut(s)	288
BsiHKCI	CYCGRG	3 cut(s)	12, 654, 1199
BsiSI	CCGG	2 cut(s)	13, 289
BsmAI	GTCTC	2 cut(s)	106, 126
BsmBI	CGTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	2 cut(s)	169, 1184
BsoBI	CYCGRG	3 cut(s)	12, 654, 1199
Bsp1286I	GDGCHC	2 cut(s)	959, 983
Bsp143I	GATC	3 cut(s)	443, 766, 1246
Bsp19I	CCATGG	2 cut(s)	1000, 1032
BspACI	CCGC	2 cut(s)	585, 997
BspANI	GGCC	2 cut(s)	169, 1184
BspCNI	CTCAG	3 cut(s)	130, 331, 1060
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	237, 318
BspMAI	CTGCAG	1 cut(s)	1180
BspOI	GCTAGC	2 cut(s)	626, 1154
BsrDI	GCAATG	2 cut(s)	306, 509
BsrFI	RCCGGY	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	8 cut(s)	12, 13, 125, 178, 312, 1000, 1032, 1114
BssMI	GATC	3 cut(s)	443, 766, 1246
BssNAI	GTATAC	1 cut(s)	425
BssT1I	CCWWGG	4 cut(s)	312, 1000, 1032, 1114
Bst1107I	GTATAC	1 cut(s)	425
Bst2UI	CCWGG	3 cut(s)	126, 180, 196
Bst4CI	ACNGT	2 cut(s)	388, 715
Bst6I	CTCTTC	1 cut(s)	1032
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstC8I	GCNNGC	7 cut(s)	171, 327, 492, 541, 624, 1056, 1152
BstDEI	CTNAG	4 cut(s)	117, 339, 680, 1047
BstDSI	CCRYGG	2 cut(s)	1000, 1032
BstF5I	GGATG	2 cut(s)	571, 993
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	1241
BstHHI	GCGC	2 cut(s)	1105, 1240
BstKTI	GATC	3 cut(s)	446, 769, 1249
BstMAI	GTCTC	2 cut(s)	106, 126
BstMBI	GATC	3 cut(s)	443, 766, 1246
BstMWI	GCNNNNNNNGC	7 cut(s)	335, 632, 665, 857, 887, 1172, 1181
BstNI	CCWGG	3 cut(s)	126, 180, 196
BstNSI	RCATGY	1 cut(s)	1166
BstSCI	CCNGG	5 cut(s)	11, 12, 124, 178, 194
BstSFI	CTRYAG	1 cut(s)	1176
BstSLI	GKGCMC	1 cut(s)	959
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	322, 748, 1162
BstX2I	RGATCY	1 cut(s)	1246
BstYI	RGATCY	1 cut(s)	1246
BstZ17I	GTATAC	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	169, 1184
BtgI	CCRYGG	2 cut(s)	1000, 1032
BtrI	CACGTC	1 cut(s)	960
BtsCI	GGATG	2 cut(s)	571, 993
Cac8I	GCNNGC	7 cut(s)	171, 327, 492, 541, 624, 1056, 1152
CfoI	GCGC	2 cut(s)	1105, 1240
Cfr10I	RCCGGY	1 cut(s)	288
Cfr9I	CCCGGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	1 cut(s)	343
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	8 cut(s)	533, 551, 745, 781, 883, 1001, 1033, 1163
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	4 cut(s)	117, 339, 680, 1047
DpnI	GATC	3 cut(s)	445, 768, 1248
DpnII	GATC	3 cut(s)	443, 766, 1246
DraI	TTTAAA	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
EciI	GGCGGA	1 cut(s)	986
Eco130I	CCWWGG	4 cut(s)	312, 1000, 1032, 1114
Eco24I	GRGCYC	1 cut(s)	983
Eco88I	CYCGRG	3 cut(s)	12, 654, 1199
EcoRII	CCWGG	3 cut(s)	124, 178, 194
EcoT14I	CCWWGG	4 cut(s)	312, 1000, 1032, 1114
EcoT38I	GRGCYC	1 cut(s)	983
ErhI	CCWWGG	4 cut(s)	312, 1000, 1032, 1114
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	8 cut(s)	536, 554, 748, 784, 886, 1004, 1036, 1166
FatI	CATG	8 cut(s)	532, 550, 744, 780, 882, 1000, 1032, 1162
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	336, 586, 762, 1176
FokI	GGATG	2 cut(s)	578, 980
FriOI	GRGCYC	1 cut(s)	983
Fsp4HI	GCNGC	4 cut(s)	336, 586, 762, 1176
FspBI	CTAG	6 cut(s)	24, 33, 623, 1151, 1244, 1259
GlaI	GCGC	2 cut(s)	1104, 1239
GluI	GCNGC	4 cut(s)	336, 586, 762, 1176
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	1241
HaeIII	GGCC	2 cut(s)	169, 1184
HapII	CCGG	2 cut(s)	13, 289
HgaI	GACGC	1 cut(s)	591
HhaI	GCGC	2 cut(s)	1105, 1240
Hin1II	CATG	8 cut(s)	536, 554, 748, 784, 886, 1004, 1036, 1166
Hin6I	GCGC	2 cut(s)	1103, 1238
HinP1I	GCGC	2 cut(s)	1103, 1238
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	5 cut(s)	131, 449, 529, 907, 1190
HpaII	CCGG	2 cut(s)	13, 289
HphI	GGTGA	3 cut(s)	200, 749, 1243
Hpy166II	GTNNAC	2 cut(s)	405, 425
Hpy188I	TCNGA	4 cut(s)	265, 414, 448, 991
Hpy188III	TCNNGA	3 cut(s)	654, 944, 1244
Hpy8I	GTNNAC	2 cut(s)	405, 425
HpyAV	CCTTC	2 cut(s)	359, 1218
HpyCH4III	ACNGT	2 cut(s)	388, 715
HpyCH4IV	ACGT	2 cut(s)	772, 959
HpyF10VI	GCNNNNNNNGC	7 cut(s)	335, 632, 665, 857, 887, 1172, 1181
HpyF3I	CTNAG	4 cut(s)	117, 339, 680, 1047
HpySE526I	ACGT	2 cut(s)	772, 959
Hsp92II	CATG	8 cut(s)	536, 554, 748, 784, 886, 1004, 1036, 1166
HspAI	GCGC	2 cut(s)	1103, 1238
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	443, 766, 1246
LmnI	GCTCC	2 cut(s)	227, 1021
Lsp1109I	GCAGC	3 cut(s)	322, 748, 1162
LweI	GCATC	7 cut(s)	208, 460, 559, 733, 827, 974, 1014
MaeI	CTAG	6 cut(s)	24, 33, 623, 1151, 1244, 1259
MaeII	ACGT	2 cut(s)	772, 959
MaeIII	GTNAC	3 cut(s)	291, 517, 730
MalI	GATC	3 cut(s)	445, 768, 1248
MboI	GATC	3 cut(s)	443, 766, 1246
MboII	GAAGA	3 cut(s)	88, 1049, 1226
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	1246
MhlI	GDGCHC	2 cut(s)	959, 983
MluCI	AATT	5 cut(s)	189, 204, 485, 601, 846
MmeI	TCCRAC	1 cut(s)	407
MseI	TTAA	4 cut(s)	188, 351, 398, 599
MslI	CAYNNNNRTG	2 cut(s)	555, 749
MspA1I	CMGCKG	1 cut(s)	928
MspI	CCGG	2 cut(s)	13, 289
MspR9I	CCNGG	5 cut(s)	13, 14, 126, 180, 196
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	920
MvaI	CCWGG	3 cut(s)	126, 180, 196
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	7 cut(s)	335, 632, 665, 857, 887, 1172, 1181
NciI	CCSGG	2 cut(s)	13, 14
NcoI	CCATGG	2 cut(s)	1000, 1032
NdeII	GATC	3 cut(s)	443, 766, 1246
NheI	GCTAGC	2 cut(s)	622, 1150
NlaIII	CATG	8 cut(s)	536, 554, 748, 784, 886, 1004, 1036, 1166
NlaIV	GGNNCC	2 cut(s)	237, 318
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	1166
PaeR7I	CTCGAG	1 cut(s)	654
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	5 cut(s)	131, 449, 529, 907, 1190
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	4 cut(s)	337, 587, 763, 1177
PshBI	ATTAAT	1 cut(s)	398
Psp1406I	AACGTT	1 cut(s)	772
Psp6I	CCWGG	3 cut(s)	124, 178, 194
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	3 cut(s)	124, 178, 194
PspN4I	GGNNCC	2 cut(s)	237, 318
PstI	CTGCAG	1 cut(s)	1180
PsuI	RGATCY	1 cut(s)	1246
PvuII	CAGCTG	1 cut(s)	928
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	2 cut(s)	555, 749
SaqAI	TTAA	4 cut(s)	188, 351, 398, 599
SatI	GCNGC	4 cut(s)	336, 586, 762, 1176
Sau3AI	GATC	3 cut(s)	443, 766, 1246
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	5 cut(s)	13, 14, 126, 180, 196
SduI	GDGCHC	2 cut(s)	959, 983
SfaNI	GCATC	7 cut(s)	208, 460, 559, 733, 827, 974, 1014
SfcI	CTRYAG	1 cut(s)	1176
Sfr274I	CTCGAG	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	654
SmaI	CCCGGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	555, 749
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	5 cut(s)	189, 204, 485, 601, 846
SsiI	CCGC	2 cut(s)	585, 997
SspI	AATATT	2 cut(s)	1023, 1093
SspMI	CTAG	6 cut(s)	24, 33, 623, 1151, 1244, 1259
StyD4I	CCNGG	5 cut(s)	11, 12, 124, 178, 194
StyI	CCWWGG	4 cut(s)	312, 1000, 1032, 1114
TaaI	ACNGT	2 cut(s)	388, 715
TaiI	ACGT	2 cut(s)	775, 962
TaqI	TCGA	3 cut(s)	76, 134, 655
TasI	AATT	5 cut(s)	189, 204, 485, 601, 846
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	5 cut(s)	131, 449, 529, 907, 1190
Tru1I	TTAA	4 cut(s)	188, 351, 398, 599
Tru9I	TTAA	4 cut(s)	188, 351, 398, 599
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	3 cut(s)	335, 761, 1175
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	521, 585
TspGWI	ACGGA	1 cut(s)	497
TspMI	CCCGGG	1 cut(s)	12
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	2 cut(s)	204, 601
XbaI	TCTAGA	1 cut(s)	1243
XceI	RCATGY	1 cut(s)	1166
XhoI	CTCGAG	1 cut(s)	654
XmaI	CCCGGG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	6 cut(s)	24, 33, 623, 1151, 1244, 1259
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.