Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10387431 .. 10394138

Gene Structure 6708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATATATTCCCGGGGATTTTCTAGGCTTCCTAGAAATAGCTTCAATGGGTTATGTCGGTGTTTGCTCTCTAATCGACCAGACCCACATCAGTTCTTCGTCTCCAAAGCCTTTTCTCAGTCTCCAGGGGATTCGACCCAGAGGATTTTGGGTTGCAGAGAGTTTTGGCCTGCTTTCCCTGGTTCTTTAATTTCCAGGCATCAAATTCACCACCAAAGTAGCTCCATAGTTGAGGAACCACAAGACCCATTCTTACTTGTTTCTGATGAGCTATCACTTATTGCTGACCGGTTACGAGCAATGGTTGTTGCCAAGGTTCCCAAGCTCGCCTCTGCTGCTGAGTACTTCTTTAAAATGGGGGTGGAAGGAAAAAGGTTTCGTCCAACGGTCTTATTATTAATGTCAACAGCTCTGAATGTCAGTATACCTGAACCTCCTACACGATCAGAATCTCCTATGCGATTGGGAGATGCTTTCCCAACGGAATTGCGTGCAAGACAGCAATGTATAGCAGAAGTGACAGAGATGATTCATGTGGCAAGCCTCTTACATGATGATGTATTGGATGATGCAGACACAAGACGCGGCGTTGGTTCATTAAATTCTGTGATGGGAAATAAGCTAGCTGTATTAGCAGGAGATTTTCTACTCTCTCGAGCTTGTGTTGCACTTGCCTCTCTAAGAAACACAGAGGTTGTATCATTACTATCAACAGTTGTAGAGCATCTTGTAACAGGTGAAACCATGCAAATGACTACTGCTGCTGATCAACGTTGTAGCATGGAGTATTATATAGAAAAGACATATTACAAGACTGCATCATTGATTTCAAATAGTTGCAAGGCAATTGCCATTCTTGCTGGGCATACAACAGAAGTTGCCATGATGGCTTATGAGTATGGAAAGAATCTGGTTTGTGAGCTCCTGAATATATATATATTTTTTAAATTCCTTTTCTTTTTCCCTCTTTTCACAAGGAGCAATCCATCTTCTGCAATCTTTAATGTGTACTGGACATGTCTCCATGGCTGTAGAATTAATAATAAGATGATGTCTCTTTTAGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

356

Amino Acids

39.87

Weight (kDa)

8.02

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	108 - 304	2.1e-45	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	1 cut(s)	585
AciI	CCGC	1 cut(s)	585
AclI	AACGTT	1 cut(s)	772
AcsI	RAATTY	3 cut(s)	204, 601, 947
AfaI	GTAC	2 cut(s)	344, 1010
AflIII	ACRYGT	1 cut(s)	1016
AgeI	ACCGGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	46, 831
AjnI	CCWGG	3 cut(s)	124, 178, 194
AluBI	AGCT	9 cut(s)	42, 222, 271, 325, 410, 622, 626, 659, 922
AluI	AGCT	9 cut(s)	42, 222, 271, 325, 410, 622, 626, 659, 922
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	4 cut(s)	106, 126, 1025, 1059
Ama87I	CYCGRG	2 cut(s)	12, 654
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	335, 761
ApoI	RAATTY	3 cut(s)	204, 601, 947
AseI	ATTAAT	2 cut(s)	398, 1038
AsiGI	ACCGGT	1 cut(s)	288
AsuC2I	CCSGG	2 cut(s)	13, 14
AsuHPI	GGTGA	2 cut(s)	200, 749
AsuNHI	GCTAGC	1 cut(s)	622
AvaI	CYCGRG	2 cut(s)	12, 654
BanII	GRGCYC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	2 cut(s)	322, 748
BccI	CCATC	3 cut(s)	604, 880, 994
BciT130I	CCWGG	3 cut(s)	126, 180, 196
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	13, 14
BcoDI	GTCTC	4 cut(s)	106, 126, 1025, 1059
BfaI	CTAG	4 cut(s)	24, 33, 623, 1069
BfmI	CTRYAG	1 cut(s)	1030
BglI	GCCNNNNNGGC	1 cut(s)	887
BglII	AGATCT	1 cut(s)	1063
BisI	GCNGC	3 cut(s)	336, 586, 762
BlsI	GCNGC	3 cut(s)	337, 587, 763
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	5 cut(s)	13, 14, 126, 180, 196
BmeT110I	CYCGRG	2 cut(s)	12, 654
BmiI	GGNNCC	2 cut(s)	237, 318
BmrFI	CCNGG	5 cut(s)	13, 14, 126, 180, 196
BmsI	GCATC	5 cut(s)	208, 460, 559, 733, 827
BmtI	GCTAGC	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	13, 14
BsaBI	GATNNNNATC	1 cut(s)	448
BsaJI	CCNNGG	6 cut(s)	12, 13, 125, 178, 312, 1024
BsaWI	WCCGGW	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	1016
Bse3DI	GCAATG	2 cut(s)	306, 509
Bse8I	GATNNNNATC	1 cut(s)	448
BseBI	CCWGG	3 cut(s)	126, 180, 196
BseDI	CCNNGG	6 cut(s)	12, 13, 125, 178, 312, 1024
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	306, 509
BseMII	CTCAG	2 cut(s)	131, 330
BseNI	ACTGG	1 cut(s)	1016
BseXI	GCAGC	2 cut(s)	322, 748
BseYI	CCCAGC	1 cut(s)	860
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	169
BshTI	ACCGGT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	924
BsiHKCI	CYCGRG	2 cut(s)	12, 654
BsiSI	CCGG	2 cut(s)	13, 289
BsmAI	GTCTC	4 cut(s)	106, 126, 1025, 1059
BsmBI	CGTCTC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	2 cut(s)	12, 654
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	3 cut(s)	443, 766, 1063
Bsp19I	CCATGG	1 cut(s)	1024
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	130, 331
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	237, 318
BspOI	GCTAGC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	306, 509
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	1016
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	6 cut(s)	12, 13, 125, 178, 312, 1024
BssMI	GATC	3 cut(s)	443, 766, 1063
BssNAI	GTATAC	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	312, 1024
Bst1107I	GTATAC	1 cut(s)	425
Bst2UI	CCWGG	3 cut(s)	126, 180, 196
Bst4CI	ACNGT	2 cut(s)	388, 715
BstC8I	GCNNGC	5 cut(s)	171, 327, 492, 541, 624
BstDEI	CTNAG	3 cut(s)	117, 339, 680
BstDSI	CCRYGG	1 cut(s)	1024
BstF5I	GGATG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	446, 769, 1066
BstMAI	GTCTC	4 cut(s)	106, 126, 1025, 1059
BstMBI	GATC	3 cut(s)	443, 766, 1063
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 632, 665, 857, 887
BstNI	CCWGG	3 cut(s)	126, 180, 196
BstNSI	RCATGY	1 cut(s)	1020
BstSCI	CCNGG	5 cut(s)	11, 12, 124, 178, 194
BstSFI	CTRYAG	1 cut(s)	1030
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	322, 748
BstX2I	RGATCY	1 cut(s)	1063
BstYI	RGATCY	1 cut(s)	1063
BstZ17I	GTATAC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	1024
BtsCI	GGATG	1 cut(s)	571
Cac8I	GCNNGC	5 cut(s)	171, 327, 492, 541, 624
Cfr10I	RCCGGY	1 cut(s)	288
Cfr9I	CCCGGG	1 cut(s)	12
CseI	GACGC	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	343, 1009
CspAI	ACCGGT	1 cut(s)	288
CviAII	CATG	7 cut(s)	533, 551, 745, 781, 883, 1017, 1025
CviQI	GTAC	2 cut(s)	343, 1009
DdeI	CTNAG	3 cut(s)	117, 339, 680
DpnI	GATC	3 cut(s)	445, 768, 1065
DpnII	GATC	3 cut(s)	443, 766, 1063
DraI	TTTAAA	2 cut(s)	352, 946
Ecl136II	GAGCTC	1 cut(s)	922
Eco130I	CCWWGG	2 cut(s)	312, 1024
Eco24I	GRGCYC	1 cut(s)	924
Eco53kI	GAGCTC	1 cut(s)	922
Eco88I	CYCGRG	2 cut(s)	12, 654
EcoICRI	GAGCTC	1 cut(s)	922
EcoRII	CCWGG	3 cut(s)	124, 178, 194
EcoT14I	CCWWGG	2 cut(s)	312, 1024
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	2 cut(s)	312, 1024
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	7 cut(s)	536, 554, 748, 784, 886, 1020, 1028
FatI	CATG	7 cut(s)	532, 550, 744, 780, 882, 1016, 1024
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	336, 586, 762
FokI	GGATG	1 cut(s)	578
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	3 cut(s)	336, 586, 762
FspBI	CTAG	4 cut(s)	24, 33, 623, 1069
GluI	GCNGC	3 cut(s)	336, 586, 762
GsaI	CCCAGC	1 cut(s)	864
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	13, 289
HgaI	GACGC	1 cut(s)	591
Hin1II	CATG	7 cut(s)	536, 554, 748, 784, 886, 1020, 1028
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	131, 449, 529, 907
HpaII	CCGG	2 cut(s)	13, 289
HphI	GGTGA	2 cut(s)	200, 749
Hpy166II	GTNNAC	3 cut(s)	405, 425, 1009
Hpy188I	TCNGA	3 cut(s)	265, 414, 448
Hpy188III	TCNNGA	2 cut(s)	654, 925
Hpy8I	GTNNAC	3 cut(s)	405, 425, 1009
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	388, 715
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	8 cut(s)	156, 494, 572, 668, 748, 818, 840, 995
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 632, 665, 857, 887
HpyF3I	CTNAG	3 cut(s)	117, 339, 680
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	7 cut(s)	536, 554, 748, 784, 886, 1020, 1028
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	443, 766, 1063
LmnI	GCTCC	3 cut(s)	227, 927, 978
Lsp1109I	GCAGC	2 cut(s)	322, 748
LweI	GCATC	5 cut(s)	208, 460, 559, 733, 827
MaeI	CTAG	4 cut(s)	24, 33, 623, 1069
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	3 cut(s)	291, 517, 730
MalI	GATC	3 cut(s)	445, 768, 1065
MboI	GATC	3 cut(s)	443, 766, 1063
MboII	GAAGA	2 cut(s)	88, 981
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	1063
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	7 cut(s)	189, 204, 485, 601, 846, 947, 1035
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	8 cut(s)	135, 226, 340, 444, 554, 685, 685, 975
MseI	TTAA	7 cut(s)	188, 351, 398, 599, 945, 1002, 1038
MslI	CAYNNNNRTG	2 cut(s)	555, 749
MspI	CCGG	2 cut(s)	13, 289
MspR9I	CCNGG	5 cut(s)	13, 14, 126, 180, 196
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	3 cut(s)	126, 180, 196
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	5 cut(s)	335, 632, 665, 857, 887
NciI	CCSGG	2 cut(s)	13, 14
NcoI	CCATGG	1 cut(s)	1024
NdeII	GATC	3 cut(s)	443, 766, 1063
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	7 cut(s)	536, 554, 748, 784, 886, 1020, 1028
NlaIV	GGNNCC	2 cut(s)	237, 318
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	1020
PaeR7I	CTCGAG	1 cut(s)	654
PciI	ACATGT	1 cut(s)	1016
PfeI	GAWTC	4 cut(s)	131, 449, 529, 907
PinAI	ACCGGT	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	337, 587, 763
PscI	ACATGT	1 cut(s)	1016
PshBI	ATTAAT	2 cut(s)	398, 1038
Psp124BI	GAGCTC	1 cut(s)	924
Psp1406I	AACGTT	1 cut(s)	772
Psp6I	CCWGG	3 cut(s)	124, 178, 194
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	3 cut(s)	124, 178, 194
PspN4I	GGNNCC	2 cut(s)	237, 318
PsuI	RGATCY	1 cut(s)	1063
RsaI	GTAC	2 cut(s)	344, 1010
RsaNI	GTAC	2 cut(s)	343, 1009
RseI	CAYNNNNRTG	2 cut(s)	555, 749
SacI	GAGCTC	1 cut(s)	924
SaqAI	TTAA	7 cut(s)	188, 351, 398, 599, 945, 1002, 1038
SatI	GCNGC	3 cut(s)	336, 586, 762
Sau3AI	GATC	3 cut(s)	443, 766, 1063
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	5 cut(s)	13, 14, 126, 180, 196
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	5 cut(s)	208, 460, 559, 733, 827
SfcI	CTRYAG	1 cut(s)	1030
Sfr274I	CTCGAG	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	654
SmaI	CCCGGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	555, 749
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	7 cut(s)	189, 204, 485, 601, 846, 947, 1035
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	4 cut(s)	24, 33, 623, 1069
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	5 cut(s)	11, 12, 124, 178, 194
StyI	CCWWGG	2 cut(s)	312, 1024
TaaI	ACNGT	2 cut(s)	388, 715
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	3 cut(s)	76, 134, 655
TasI	AATT	7 cut(s)	189, 204, 485, 601, 846, 947, 1035
TatI	WGTACW	2 cut(s)	342, 1008
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	4 cut(s)	131, 449, 529, 907
Tru1I	TTAA	7 cut(s)	188, 351, 398, 599, 945, 1002, 1038
Tru9I	TTAA	7 cut(s)	188, 351, 398, 599, 945, 1002, 1038
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	335, 761
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	521, 585
TspGWI	ACGGA	1 cut(s)	497
TspMI	CCCGGG	1 cut(s)	12
VspI	ATTAAT	2 cut(s)	398, 1038
XapI	RAATTY	3 cut(s)	204, 601, 947
XceI	RCATGY	1 cut(s)	1020
XhoI	CTCGAG	1 cut(s)	654
XmaI	CCCGGG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	4 cut(s)	24, 33, 623, 1069
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.