Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10826846 .. 10832883

Gene Structure 6038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGATATTTTCTCGGGGATTTTCTAGGCTTCCAAGAAACAGCTTCAATGGGCTTCTGTGTCGGTGTTTGCTCTCTAACCGACCAGACCCAAATCAATTCTTCGTCTCCAAGGCTTATTCTCAGGCTATAGGGGATTCGACCCAGAAGATTTTGGGTTGCAGAGAGTTTTGGTCTTCTGGGTTGCCTACTTTCCCTGGCTCTTTAACTTCTAGGCATCAAATTCACCACCAAATTAGCTCCATAGTTGAGGAACCACAAGACCCATTCTCGCTTGTTTCTGATGAGCTATCACTTATTGCTGACAGGTTGCGAGCGATGGTAGTTGCTAAGGTTCCTAAGCTGGCCTCTGCTGCTGAGTACTTCTTTAAAATGGGGGTCGAAGGAAAGAGGTTTCGTCCTACGGTCTTATTATTGATGTCAACAGCACTGAATGGCAGAATACCTGAGCCTCCTACACAACATGAACCCCCTATGCGATTGGAAGATGCTTTCCCAACGGAATTGCGGGCAAGACAACAATGTATAGCAGAAGTGACAGAGATGATTCATGTGGCAAGCCTCCTACATGATGATGTATTGGATGAAGCAGACACAAGACGTGGTGTTGGTTCGTTAAATTCTGTAATGGGAAATAAGTTAGCTGTATTAGCAGGAGATTTTCTGCTCTCTCGAGCTTGTGTTGCACTTGCCTCTCTACGAAACACAGAGGTGGTATCGTTACTATCAACAGTTGTAGAGCACCTTGTTACAGGTGAAACTATGCAAATGACTACTGCAGCCGATCAACGTTGTAGCATGGAATATTATATAGAAAAGACGTATTACAAGACTGCATCATTGATTTCAAACAGTTGCAAGGCAATTGCTATTCTTGCTGGGCATACAACAGAAGTTGCAATGTTGGCTTTTGACTATGGAAAAAATCTGGGATTGGCATTTCAATTGATAGATGATGTCCTTGATTTTACCAGCACGTCAGCATCACTTGGAAAGGGTTCGTTATCTGACATCCGTCATGGCATAATTACTGCTCCAATATTATTTGCGATGGAAGAGTTCCCTCAGTTGCGTGCAGTGGTTGAACAGGGCTTTGACAATCCTGCAAATGTTGAGATTGCTCTTGAATACCTTGGTAAGAGCAATGGAATACAGAGGACAAGGGAGCTAGCCCGAAAACATGCAAGCCTTGCGGCAGAGGCAATTGAATCTCTTCCAGATAGCGACAACGAAGATGTACTAAGATCAAGGAGAGCGCTCCTAGATCTCACCCATATAGTCATTACAAGAACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

431

Amino Acids

47.53

Weight (kDa)

6.03

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
polyprenyl_synt	PF00348	113 - 376	2.4e-66	Polyprenyl synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	505, 1190
AclI	AACGTT	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	219, 616
AfaI	GTAC	2 cut(s)	359, 1236
AfeI	AGCGCT	1 cut(s)	1254
AgsI	TTSAA	6 cut(s)	46, 846, 941, 1082, 1124, 1205
AjiI	CACGTC	2 cut(s)	599, 975
AjnI	CCWGG	1 cut(s)	193
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	7 cut(s)	42, 237, 286, 340, 641, 674, 1165
AluI	AGCT	7 cut(s)	42, 237, 286, 340, 641, 674, 1165
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	1 cut(s)	109
Ama87I	CYCGRG	2 cut(s)	12, 669
Aor51HI	AGCGCT	1 cut(s)	1254
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	2 cut(s)	350, 776
ApoI	RAATTY	2 cut(s)	219, 616
Asp700I	GAANNNNTTC	2 cut(s)	994, 1209
AspLEI	GCGC	1 cut(s)	1255
AsuHPI	GGTGA	3 cut(s)	215, 764, 1258
AsuNHI	GCTAGC	1 cut(s)	1165
AvaI	CYCGRG	2 cut(s)	12, 669
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	337, 788
BccI	CCATC	2 cut(s)	310, 1042
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	4 cut(s)	24, 210, 1166, 1259
BfmI	CTRYAG	2 cut(s)	126, 774
BfoI	RGCGCY	1 cut(s)	1256
BglII	AGATCT	1 cut(s)	1261
BisI	GCNGC	3 cut(s)	351, 777, 1191
BlsI	GCNGC	3 cut(s)	352, 778, 1192
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	2 cut(s)	12, 669
BmgBI	CACGTC	2 cut(s)	599, 975
BmiI	GGNNCC	2 cut(s)	252, 333
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	4 cut(s)	223, 475, 842, 989
BmtI	GCTAGC	1 cut(s)	1169
BoxI	GACNNNNGTC	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	3 cut(s)	327, 336, 444
BsaJI	CCNNGG	3 cut(s)	108, 193, 1129
Bse3DI	GCAATG	2 cut(s)	903, 1147
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	108, 193, 1129
BseGI	GGATG	2 cut(s)	586, 1008
BseMI	GCAATG	2 cut(s)	903, 1147
BseMII	CTCAG	4 cut(s)	134, 345, 435, 1076
BseXI	GCAGC	2 cut(s)	337, 788
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	1092
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	2 cut(s)	12, 669
BsmAI	GTCTC	1 cut(s)	109
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	12, 669
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	781, 1241, 1261
BspACI	CCGC	2 cut(s)	505, 1190
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	4 cut(s)	133, 346, 436, 1075
BspLI	GGNNCC	2 cut(s)	252, 333
BspMAI	CTGCAG	1 cut(s)	778
BspOI	GCTAGC	1 cut(s)	1169
BsrDI	GCAATG	2 cut(s)	903, 1147
BssECI	CCNNGG	3 cut(s)	108, 193, 1129
BssMI	GATC	3 cut(s)	781, 1241, 1261
BssT1I	CCWWGG	2 cut(s)	108, 1129
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	403, 730, 851
Bst6I	CTCTTC	2 cut(s)	1047, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstC8I	GCNNGC	7 cut(s)	312, 342, 507, 556, 1071, 1167, 1183
BstDEI	CTNAG	7 cut(s)	120, 327, 336, 354, 444, 1062, 1238
BstF5I	GGATG	2 cut(s)	586, 1008
BstH2I	RGCGCY	1 cut(s)	1256
BstHHI	GCGC	1 cut(s)	1255
BstKTI	GATC	3 cut(s)	784, 1244, 1264
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	781, 1241, 1261
BstMWI	GCNNNNNNNGC	7 cut(s)	350, 647, 680, 872, 902, 1187, 1196
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	1181
BstPAI	GACNNNNGTC	1 cut(s)	1011
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	2 cut(s)	126, 774
BstV1I	GCAGC	2 cut(s)	337, 788
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	1261
BstYI	RGATCY	1 cut(s)	1261
BsuRI	GGCC	1 cut(s)	344
BtgZI	GCGATG	2 cut(s)	329, 1061
BtrI	CACGTC	2 cut(s)	599, 975
BtsCI	GGATG	2 cut(s)	586, 1008
BtsI	GCAGTG	1 cut(s)	1080
BtsIMutI	CAGTG	2 cut(s)	425, 1080
Cac8I	GCNNGC	7 cut(s)	312, 342, 507, 556, 1071, 1167, 1183
CfoI	GCGC	1 cut(s)	1255
Csp6I	GTAC	2 cut(s)	358, 1235
CviAII	CATG	6 cut(s)	461, 548, 566, 796, 1016, 1178
CviQI	GTAC	2 cut(s)	358, 1235
DdeI	CTNAG	7 cut(s)	120, 327, 336, 354, 444, 1062, 1238
DpnI	GATC	3 cut(s)	783, 1243, 1263
DpnII	GATC	3 cut(s)	781, 1241, 1261
DraI	TTTAAA	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	1047, 1215
EarI	CTCTTC	2 cut(s)	1047, 1215
Eco130I	CCWWGG	2 cut(s)	108, 1129
Eco47III	AGCGCT	1 cut(s)	1254
Eco88I	CYCGRG	2 cut(s)	12, 669
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	108, 1129
ErhI	CCWWGG	2 cut(s)	108, 1129
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	6 cut(s)	464, 551, 569, 799, 1019, 1181
FatI	CATG	6 cut(s)	460, 547, 565, 795, 1015, 1177
FauI	CCCGC	1 cut(s)	498
Fnu4HI	GCNGC	3 cut(s)	351, 777, 1191
FokI	GGATG	2 cut(s)	593, 995
Fsp4HI	GCNGC	3 cut(s)	351, 777, 1191
FspBI	CTAG	4 cut(s)	24, 210, 1166, 1259
GlaI	GCGC	1 cut(s)	1254
GluI	GCNGC	3 cut(s)	351, 777, 1191
GsaI	CCCAGC	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	1256
HaeIII	GGCC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	1255
Hin1II	CATG	6 cut(s)	464, 551, 569, 799, 1019, 1181
Hin6I	GCGC	1 cut(s)	1253
HinP1I	GCGC	1 cut(s)	1253
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	134, 544, 1205
HphI	GGTGA	3 cut(s)	215, 764, 1258
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	2 cut(s)	280, 1006
Hpy188III	TCNNGA	3 cut(s)	669, 1121, 1214
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	3 cut(s)	403, 730, 851
HpyCH4IV	ACGT	4 cut(s)	598, 787, 818, 974
HpyF10VI	GCNNNNNNNGC	7 cut(s)	350, 647, 680, 872, 902, 1187, 1196
HpyF3I	CTNAG	7 cut(s)	120, 327, 336, 354, 444, 1062, 1238
HpySE526I	ACGT	4 cut(s)	598, 787, 818, 974
Hsp92II	CATG	6 cut(s)	464, 551, 569, 799, 1019, 1181
HspAI	GCGC	1 cut(s)	1253
Kzo9I	GATC	3 cut(s)	781, 1241, 1261
LmnI	GCTCC	4 cut(s)	242, 1036, 1162, 1260
Lsp1109I	GCAGC	2 cut(s)	337, 788
LweI	GCATC	4 cut(s)	223, 475, 842, 989
MaeI	CTAG	4 cut(s)	24, 210, 1166, 1259
MaeII	ACGT	4 cut(s)	598, 787, 818, 974
MaeIII	GTNAC	3 cut(s)	532, 717, 745
MalI	GATC	3 cut(s)	783, 1243, 1263
MboI	GATC	3 cut(s)	781, 1241, 1261
MboII	GAAGA	7 cut(s)	91, 157, 165, 494, 1064, 1202, 1241
MfeI	CAATTG	3 cut(s)	861, 941, 1200
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	9 cut(s)	95, 219, 231, 500, 616, 861, 941, 1023, 1200
MroXI	GAANNNNTTC	2 cut(s)	994, 1209
MseI	TTAA	3 cut(s)	203, 366, 614
MslI	CAYNNNNRTG	2 cut(s)	570, 707
MspR9I	CCNGG	1 cut(s)	195
MunI	CAATTG	3 cut(s)	861, 941, 1200
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	7 cut(s)	350, 647, 680, 872, 902, 1187, 1196
NdeII	GATC	3 cut(s)	781, 1241, 1261
NheI	GCTAGC	1 cut(s)	1165
NlaIII	CATG	6 cut(s)	464, 551, 569, 799, 1019, 1181
NlaIV	GGNNCC	2 cut(s)	252, 333
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	1 cut(s)	1181
OliI	CACNNNNGTG	1 cut(s)	707
PaeR7I	CTCGAG	1 cut(s)	669
PdmI	GAANNNNTTC	2 cut(s)	994, 1209
PfeI	GAWTC	3 cut(s)	134, 544, 1205
PkrI	GCNGC	3 cut(s)	352, 778, 1192
PshAI	GACNNNNGTC	1 cut(s)	1011
Psp1406I	AACGTT	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	252, 333
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	1261
RsaI	GTAC	2 cut(s)	359, 1236
RsaNI	GTAC	2 cut(s)	358, 1235
RseI	CAYNNNNRTG	2 cut(s)	570, 707
SaqAI	TTAA	3 cut(s)	203, 366, 614
SatI	GCNGC	3 cut(s)	351, 777, 1191
Sau3AI	GATC	3 cut(s)	781, 1241, 1261
ScaI	AGTACT	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	4 cut(s)	223, 475, 842, 989
SfcI	CTRYAG	2 cut(s)	126, 774
Sfr274I	CTCGAG	1 cut(s)	669
SlaI	CTCGAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	2 cut(s)	570, 707
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
Sse9I	AATT	9 cut(s)	95, 219, 231, 500, 616, 861, 941, 1023, 1200
SsiI	CCGC	2 cut(s)	505, 1190
SspI	AATATT	2 cut(s)	803, 1038
SspMI	CTAG	4 cut(s)	24, 210, 1166, 1259
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	108, 1129
TaaI	ACNGT	3 cut(s)	403, 730, 851
TaiI	ACGT	4 cut(s)	601, 790, 821, 977
TaqI	TCGA	3 cut(s)	137, 378, 670
TasI	AATT	9 cut(s)	95, 219, 231, 500, 616, 861, 941, 1023, 1200
TatI	WGTACW	2 cut(s)	357, 1234
TauI	GCSGC	1 cut(s)	1193
TfiI	GAWTC	3 cut(s)	134, 544, 1205
Tru1I	TTAA	3 cut(s)	203, 366, 614
Tru9I	TTAA	3 cut(s)	203, 366, 614
TscAI	CASTG	2 cut(s)	432, 1080
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	350, 776
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	477, 536, 597
TspGWI	ACGGA	2 cut(s)	512, 1001
TspRI	CASTG	2 cut(s)	432, 1080
XapI	RAATTY	2 cut(s)	219, 616
XceI	RCATGY	1 cut(s)	1181
XhoI	CTCGAG	1 cut(s)	669
XmnI	GAANNNNTTC	2 cut(s)	994, 1209
XspI	CTAG	4 cut(s)	24, 210, 1166, 1259
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.