Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

10293555 .. 10294159

Gene Structure 605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCAAGCATCAGCTTGTCATATATATAAAGTTATAGGCTACTACCTTGGCATTATGACTGCTCCAATATTGTTTGCCCTGGAAGAGTTCCCTCAGTTGGGTGCAGTTGTTGAAAAAGGAATTGACAATCCTGCAAATATTGAGATCGCTCTTGACTACCTTGCTAAGAGTAATGGTATACAGAGGACAAGGGATCTAGCAAGAAAGCATGCAAACCTTGCTGCAAAGGCAATCAAATCTCTGCCTGAGTGCGAGGACGTAAACGTAAGAAGATCAAGGAGGGCACTTCTAGATCTCACCCACATAGTCCTCACAAGAACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

9.3

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	97, 98
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	78, 320
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AlwI	GGATC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	208
BciT130I	CCWGG	2 cut(s)	80, 322
BfaI	CTAG	2 cut(s)	197, 290
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	80, 322
BmrFI	CCNGG	2 cut(s)	80, 322
BmsI	GCATC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	46, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 98
BseBI	CCWGG	2 cut(s)	80, 322
BseDI	CCNNGG	2 cut(s)	46, 78
BseLI	CCNNNNNNNGG	2 cut(s)	97, 98
BseMII	CTCAG	2 cut(s)	107, 237
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	97, 98
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	144, 193, 272, 292
BspCNI	CTCAG	2 cut(s)	106, 238
BspPI	GGATC	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	46, 78
BssMI	GATC	4 cut(s)	144, 193, 272, 292
BssNAI	GTATAC	1 cut(s)	179
BssT1I	CCWWGG	1 cut(s)	46
Bst1107I	GTATAC	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	80, 322
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDEI	CTNAG	3 cut(s)	93, 165, 246
BstKTI	GATC	4 cut(s)	147, 196, 275, 295
BstMBI	GATC	4 cut(s)	144, 193, 272, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 227
BstNI	CCWGG	2 cut(s)	80, 322
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	78, 320
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	193, 292
BstYI	RGATCY	2 cut(s)	193, 292
BstZ17I	GTATAC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	6, 210
CsiI	ACCWGGT	1 cut(s)	320
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	2 cut(s)	14, 39
CviKI_1	RGCY	2 cut(s)	14, 39
DdeI	CTNAG	3 cut(s)	93, 165, 246
DpnI	GATC	4 cut(s)	146, 195, 274, 294
DpnII	GATC	4 cut(s)	144, 193, 272, 292
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	78, 320
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	212
FaiI	YATR	9 cut(s)	21, 23, 25, 27, 35, 56, 179, 210, 305
FatI	CATG	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	197, 290
GluI	GCNGC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	179, 262
Hpy188III	TCNNGA	2 cut(s)	152, 290
Hpy8I	GTNNAC	2 cut(s)	179, 262
HpyCH4IV	ACGT	2 cut(s)	258, 264
HpyCH4V	TGCA	5 cut(s)	4, 104, 134, 212, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 227
HpyF3I	CTNAG	3 cut(s)	93, 165, 246
HpySE526I	ACGT	2 cut(s)	258, 264
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	4 cut(s)	144, 193, 272, 292
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	65, 92, 144, 258, 307
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	320
MaeI	CTAG	2 cut(s)	197, 290
MaeII	ACGT	2 cut(s)	258, 264
MalI	GATC	4 cut(s)	146, 195, 274, 294
MboI	GATC	4 cut(s)	144, 193, 272, 292
MboII	GAAGA	2 cut(s)	95, 282
MflI	RGATCY	2 cut(s)	193, 292
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	5 cut(s)	102, 177, 247, 273, 320
MspR9I	CCNGG	2 cut(s)	80, 322
MvaI	CCWGG	2 cut(s)	80, 322
MwoI	GCNNNNNNNGC	2 cut(s)	218, 227
NdeII	GATC	4 cut(s)	144, 193, 272, 292
NlaIII	CATG	1 cut(s)	212
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	78, 320
PspGI	CCWGG	2 cut(s)	78, 320
PsuI	RGATCY	2 cut(s)	193, 292
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	144, 193, 272, 292
ScrFI	CCNGG	2 cut(s)	80, 322
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	7 cut(s)	16, 48, 162, 219, 261, 267, 326
SexAI	ACCWGGT	1 cut(s)	320
SfaNI	GCATC	1 cut(s)	17
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	120
SspI	AATATT	2 cut(s)	69, 139
SspMI	CTAG	2 cut(s)	197, 290
StyD4I	CCNGG	2 cut(s)	78, 320
StyI	CCWWGG	1 cut(s)	46
TaiI	ACGT	2 cut(s)	261, 267
TasI	AATT	1 cut(s)	120
TseI	GCWGC	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	197, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.