Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003435

Physical Location & Seq

Genomic Coordinates Forward (+)

4180805 .. 4187840

Gene Structure 7036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G085300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTTATTTTCTCGGGGATTTTCTCGGATTGGAAGAAATAGCTTCAATGGATTGTGTCGGTGTTTGCGCTTTCGTCGTATGGACGCACATCAATTATTTGTCTCCAGCATTTATTCTCAGTCTCTAAGTGAATCGACCCAGAAGATTTTGGGTTGCAGAGATTTCTTTTCTTGGGGATTGCCGCCTGTTTTCCATGGCTATAGGCACCAAATTCACCATCAAAGCAGCTCCATAGTTGAGGAACCACTTGACCCATTCTCCCTTGTTTCCGATGAGCTGTCACTTATTGCTGACAGGTTGCGGGACATGGTAGTTGCTGAGGTCCCTAAGCTTGCCTCTGCTGCTGAGTACTTCTTTAAAATAGGGGTGGAGGGAAAGAGGTTTCGTCCCACGGTCCTATTGCTAATGTCAACAGCTCTGAATGTCACAGTACCTGAACCTCCTACACAGTTGAGAGAGGCTTTGTCAACGGAACTGCGTGCAAGACAGCAATGTATTGCAGAAGTCACAGAGATGATTCATGTGGCAAGTCTTCTACATGATGATGTATTGGATGATGCAGATACAAGACGAGGTGTTGGTTCATTAAATTGTGTAATGGGAAATAAGTTAGCTGTTTTAGCAGGGGATTTCCTGCTTTCCCGAGCTTGTGTCGCACTTGCCTCTCTAAGGAACACAGAGGTTGTATCATTACTTTCAACAGTTGTAGAGCATCTTGTGACAGGTGAAACCATGCAAATGACTACTACATCCGATCAACGTTGTAGCATGGAATATTATATACAAAAGACGTATTTCAAGACTGCATCATTGATTTCAAACAGTTGCAAGGCAATCGCCATTCTTGCTGGGCATACAGCAGAAGTTGCAATGTTGGCTTTTGAGTACGGAAAAAATCTGGGATTGGCATTTCAATTGATTGATGATGTTCTTGATTTCACGGGTACATCAACTTCTCTTGGAAAGGGCTCTTTATCTGACATCCGCCATGGCATCATAACCGCTCCAATATTGTTTGCCATGGAAGAGTTTCCTCAGCTGCGTGCAGTCGTCGAACAGGGCTTTGACAACCCTGCTAATGTTGAACTCGCTCTTGACTACCTTGGTAGGAGCCATGGGATACATAGGACAAGGGAGCTAGCCACAAAACATGCAAACCTTGCCGCATCAGCAATCGAATCTCTGCCCGAGAGTGAAGACGAAGATGTCAGAAGATCAAGGAGGGCGCTCCTAGATCTCACCCACATAGTCATTACAAGAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016740 GO:0016765 GO:0022414 GO:0032501 GO:0032502 GO:0042180 GO:0042181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050347 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

polyprenyl_synt

Protein Analysis

423

Amino Acids

46.81

Weight (kDa)

6.17

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34630 AT2G34630
fragaria_vesca	FvH4_3g05080 FvH4_3g05080 FvH4_3g05080 FvH4_3g05080
malus_domestica	MD05G1280000.v1.1 MD05G1280200.v1.1 MD10G1258500.v1.1
prunus_persica	Prupe.4G085300_v2.0.a1
pyrus_communis	pycom05g26020 pycom10g21490
rosa_chinensis	RchiOBHm_Chr5g0014811 RchiOBHm_Chr5g0014881 RchiOBHm_Chr5g0014891
rosa_laevigata	RLG00000032144
rosa_multiflora	Rmu_sc0013610.1_g000004 Rmu_sc0013610.1_g000006 Rmu_sc0013610.1_g000007 Rmu_sc0013610.1_g000008 Rmu_sc0028154.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001360 Rroxscaffold_1G00061680
rosa_rugosa	Rorug05G0020900 Rorug05G0021000 Rorug05G0021000
rosa_samantha	Rh5AG116800 Rh5AG116900 Rh5BG113200 Rh5BG113300 Rh5CG125000 Rh5CG125400 Rh5DG112600 Rh5DG113100 Rh5DG113300
rosa_wichuraiana	Rw5G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1205
AccB1I	GGYRCC	1 cut(s)	204
AccBSI	CCGCTC	1 cut(s)	1004
AciI	CCGC	5 cut(s)	182, 301, 985, 1002, 1164
AclI	AACGTT	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	4 cut(s)	350, 432, 887, 946
AfiI	CCNNNNNNNGG	1 cut(s)	669
AgsI	TTSAA	6 cut(s)	46, 699, 799, 819, 914, 1085
AluBI	AGCT	9 cut(s)	42, 228, 277, 331, 416, 614, 647, 1039, 1138
AluI	AGCT	9 cut(s)	42, 228, 277, 331, 416, 614, 647, 1039, 1138
Alw26I	GTCTC	2 cut(s)	106, 126
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	3 cut(s)	12, 642, 1187
ApeKI	GCWGC	3 cut(s)	225, 341, 1039
ApoI	RAATTY	1 cut(s)	210
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	2 cut(s)	69, 1228
AspS9I	GGNCC	2 cut(s)	322, 394
AsuHPI	GGTGA	3 cut(s)	206, 737, 1231
AsuNHI	GCTAGC	1 cut(s)	1138
AvaI	CYCGRG	3 cut(s)	12, 642, 1187
AvaII	GGWCC	2 cut(s)	322, 394
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	971
BarI	GAAGNNNNNNTAC	2 cut(s)	937, 969
BbsI	GAAGAC	2 cut(s)	524, 1203
BbvCI	CCTCAGC	2 cut(s)	318, 1035
BbvI	GCAGC	3 cut(s)	237, 328, 1026
BccI	CCATC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciVI	GTATCC	1 cut(s)	1113
BcoDI	GTCTC	2 cut(s)	106, 126
BfaI	CTAG	2 cut(s)	1139, 1232
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	1229
BfuI	GTATCC	1 cut(s)	1113
BglII	AGATCT	1 cut(s)	1234
BisI	GCNGC	5 cut(s)	182, 226, 342, 1040, 1164
BlsI	GCNGC	5 cut(s)	183, 227, 343, 1041, 1165
BmcAI	AGTACT	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	322, 394
BmeT110I	CYCGRG	3 cut(s)	12, 642, 1187
BmgT120I	GGNCC	2 cut(s)	322, 394
BmiI	GGNNCC	4 cut(s)	206, 243, 324, 1112
BmsI	GCATC	5 cut(s)	547, 721, 815, 1002, 1175
BmtI	GCTAGC	1 cut(s)	1142
BpiI	GAAGAC	2 cut(s)	524, 1203
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	3 cut(s)	318, 327, 1035
BsaJI	CCNNGG	6 cut(s)	193, 390, 988, 1020, 1102, 1114
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
Bse3DI	GCAATG	2 cut(s)	497, 876
BseDI	CCNNGG	6 cut(s)	193, 390, 988, 1020, 1102, 1114
BseGI	GGATG	3 cut(s)	559, 749, 981
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMI	GCAATG	2 cut(s)	497, 876
BseMII	CTCAG	4 cut(s)	131, 309, 336, 1049
BseXI	GCAGC	3 cut(s)	237, 328, 1026
BseYI	CCCAGC	1 cut(s)	848
BsgI	GTGCAG	1 cut(s)	1065
BshNI	GGYRCC	1 cut(s)	204
BsiHKCI	CYCGRG	3 cut(s)	12, 642, 1187
BslFI	GGGAC	3 cut(s)	308, 317, 372
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmAI	GTCTC	2 cut(s)	106, 126
BsmFI	GGGAC	3 cut(s)	308, 317, 372
BsoBI	CYCGRG	3 cut(s)	12, 642, 1187
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp143I	GATC	3 cut(s)	754, 1214, 1234
Bsp19I	CCATGG	4 cut(s)	193, 988, 1020, 1114
BspACI	CCGC	5 cut(s)	182, 301, 985, 1002, 1164
BspCNI	CTCAG	4 cut(s)	130, 310, 337, 1048
BspLI	GGNNCC	4 cut(s)	206, 243, 324, 1112
BspOI	GCTAGC	1 cut(s)	1142
BspT107I	GGYRCC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	1004
BsrDI	GCAATG	2 cut(s)	497, 876
BssECI	CCNNGG	6 cut(s)	193, 390, 988, 1020, 1102, 1114
BssMI	GATC	3 cut(s)	754, 1214, 1234
BssT1I	CCWWGG	5 cut(s)	193, 988, 1020, 1102, 1114
Bst4CI	ACNGT	5 cut(s)	394, 430, 450, 703, 824
Bst6I	CTCTTC	1 cut(s)	1020
BstAPI	GCANNNNNTGC	2 cut(s)	866, 1160
BstC8I	GCNNGC	4 cut(s)	333, 480, 1044, 1140
BstDEI	CTNAG	7 cut(s)	117, 125, 318, 327, 345, 668, 1035
BstDSI	CCRYGG	5 cut(s)	193, 390, 988, 1020, 1114
BstENI	CCTNNNNNAGG	1 cut(s)	667
BstF5I	GGATG	3 cut(s)	559, 749, 981
BstH2I	RGCGCY	1 cut(s)	1229
BstHHI	GCGC	2 cut(s)	69, 1228
BstKTI	GATC	3 cut(s)	757, 1217, 1237
BstMAI	GTCTC	2 cut(s)	106, 126
BstMBI	GATC	3 cut(s)	754, 1214, 1234
BstMWI	GCNNNNNNNGC	8 cut(s)	341, 620, 653, 845, 866, 875, 1160, 1169
BstNSI	RCATGY	1 cut(s)	1154
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	237, 328, 1026
BstV2I	GAAGAC	2 cut(s)	524, 1203
BstX2I	RGATCY	1 cut(s)	1234
BstYI	RGATCY	1 cut(s)	1234
BsuI	GTATCC	1 cut(s)	1113
BtgI	CCRYGG	5 cut(s)	193, 390, 988, 1020, 1114
BtsCI	GGATG	3 cut(s)	559, 749, 981
Cac8I	GCNNGC	4 cut(s)	333, 480, 1044, 1140
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	69, 1228
Cfr13I	GGNCC	2 cut(s)	322, 394
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	349, 431, 886, 945
CviQI	GTAC	4 cut(s)	349, 431, 886, 945
DdeI	CTNAG	7 cut(s)	117, 125, 318, 327, 345, 668, 1035
DpnI	GATC	3 cut(s)	756, 1216, 1236
DpnII	GATC	3 cut(s)	754, 1214, 1234
DraI	TTTAAA	1 cut(s)	358
DrdI	GACNNNNNNGTC	1 cut(s)	1205
DseDI	GACNNNNNNGTC	1 cut(s)	1205
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
EciI	GGCGGA	1 cut(s)	974
Eco130I	CCWWGG	5 cut(s)	193, 988, 1020, 1102, 1114
Eco24I	GRGCYC	1 cut(s)	971
Eco47I	GGWCC	2 cut(s)	322, 394
Eco88I	CYCGRG	3 cut(s)	12, 642, 1187
EcoNI	CCTNNNNNAGG	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	322
EcoT14I	CCWWGG	5 cut(s)	193, 988, 1020, 1102, 1114
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	5 cut(s)	193, 988, 1020, 1102, 1114
FaqI	GGGAC	3 cut(s)	308, 317, 372
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	182, 226, 342, 1040, 1164
FokI	GGATG	3 cut(s)	566, 736, 968
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	5 cut(s)	182, 226, 342, 1040, 1164
FspBI	CTAG	2 cut(s)	1139, 1232
GlaI	GCGC	2 cut(s)	68, 1227
GluI	GCNGC	5 cut(s)	182, 226, 342, 1040, 1164
GsaI	CCCAGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	1229
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	2 cut(s)	69, 1228
Hin6I	GCGC	2 cut(s)	67, 1226
HinP1I	GCGC	2 cut(s)	67, 1226
HincII	GTYRAC	2 cut(s)	411, 468
HindII	GTYRAC	2 cut(s)	411, 468
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	131, 517, 1178
HphI	GGTGA	3 cut(s)	206, 737, 1231
Hpy166II	GTNNAC	2 cut(s)	411, 468
Hpy188I	TCNGA	6 cut(s)	27, 271, 420, 754, 979, 1211
Hpy188III	TCNNGA	4 cut(s)	642, 799, 932, 1094
Hpy8I	GTNNAC	2 cut(s)	411, 468
Hpy99I	CGWCG	2 cut(s)	78, 1055
HpyCH4III	ACNGT	5 cut(s)	394, 430, 450, 703, 824
HpyCH4IV	ACGT	2 cut(s)	760, 791
HpyF10VI	GCNNNNNNNGC	8 cut(s)	341, 620, 653, 845, 866, 875, 1160, 1169
HpyF3I	CTNAG	7 cut(s)	117, 125, 318, 327, 345, 668, 1035
HpySE526I	ACGT	2 cut(s)	760, 791
HspAI	GCGC	2 cut(s)	67, 1226
Kzo9I	GATC	3 cut(s)	754, 1214, 1234
LmnI	GCTCC	5 cut(s)	233, 1009, 1110, 1135, 1233
Lsp1109I	GCAGC	3 cut(s)	237, 328, 1026
LweI	GCATC	5 cut(s)	547, 721, 815, 1002, 1175
MaeI	CTAG	2 cut(s)	1139, 1232
MaeII	ACGT	2 cut(s)	760, 791
MaeIII	GTNAC	4 cut(s)	279, 424, 505, 718
MalI	GATC	3 cut(s)	756, 1216, 1236
MbiI	CCGCTC	1 cut(s)	1004
MboI	GATC	3 cut(s)	754, 1214, 1234
MboII	GAAGA	7 cut(s)	45, 154, 524, 1037, 1208, 1214, 1224
MfeI	CAATTG	1 cut(s)	914
MflI	RGATCY	1 cut(s)	1234
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	4 cut(s)	92, 210, 589, 914
MroXI	GAANNNNTTC	1 cut(s)	1029
MseI	TTAA	2 cut(s)	357, 587
MslI	CAYNNNNRTG	3 cut(s)	512, 543, 737
MspA1I	CMGCKG	1 cut(s)	1039
MunI	CAATTG	1 cut(s)	914
MwoI	GCNNNNNNNGC	8 cut(s)	341, 620, 653, 845, 866, 875, 1160, 1169
NcoI	CCATGG	4 cut(s)	193, 988, 1020, 1114
NdeII	GATC	3 cut(s)	754, 1214, 1234
NheI	GCTAGC	1 cut(s)	1138
NlaIV	GGNNCC	4 cut(s)	206, 243, 324, 1112
NmuCI	GTSAC	4 cut(s)	279, 424, 505, 718
NspI	RCATGY	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	131, 517, 1178
PkrI	GCNGC	5 cut(s)	183, 227, 343, 1041, 1165
PpuMI	RGGWCCY	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	760
Psp5II	RGGWCCY	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	4 cut(s)	206, 243, 324, 1112
PspPI	GGNCC	2 cut(s)	322, 394
PspPPI	RGGWCCY	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	1234
PvuII	CAGCTG	1 cut(s)	1039
RsaI	GTAC	4 cut(s)	350, 432, 887, 946
RsaNI	GTAC	4 cut(s)	349, 431, 886, 945
RseI	CAYNNNNRTG	3 cut(s)	512, 543, 737
SaqAI	TTAA	2 cut(s)	357, 587
SatI	GCNGC	5 cut(s)	182, 226, 342, 1040, 1164
Sau3AI	GATC	3 cut(s)	754, 1214, 1234
Sau96I	GGNCC	2 cut(s)	322, 394
ScaI	AGTACT	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	5 cut(s)	547, 721, 815, 1002, 1175
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	322, 394
SmiMI	CAYNNNNRTG	3 cut(s)	512, 543, 737
Sse9I	AATT	4 cut(s)	92, 210, 589, 914
SsiI	CCGC	5 cut(s)	182, 301, 985, 1002, 1164
SspI	AATATT	2 cut(s)	776, 1011
SspMI	CTAG	2 cut(s)	1139, 1232
StyI	CCWWGG	5 cut(s)	193, 988, 1020, 1102, 1114
TaaI	ACNGT	5 cut(s)	394, 430, 450, 703, 824
TaiI	ACGT	2 cut(s)	763, 794
TaqI	TCGA	3 cut(s)	134, 1053, 1176
TasI	AATT	4 cut(s)	92, 210, 589, 914
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	2 cut(s)	184, 1166
TfiI	GAWTC	3 cut(s)	131, 517, 1178
Tru1I	TTAA	2 cut(s)	357, 587
Tru9I	TTAA	2 cut(s)	357, 587
TseFI	GTSAC	4 cut(s)	279, 424, 505, 718
TseI	GCWGC	3 cut(s)	225, 341, 1039
Tsp45I	GTSAC	4 cut(s)	279, 424, 505, 718
TspDTI	ATGAA	2 cut(s)	509, 573
TspGWI	ACGGA	2 cut(s)	485, 903
VpaK11BI	GGWCC	2 cut(s)	322, 394
XagI	CCTNNNNNAGG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	1154
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	2 cut(s)	1139, 1232
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.