Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

15404932 .. 15406609

Gene Structure 1678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGATTTGGAGTTCAGATTCATGCTTCAAATCCAGGAAACACCAATGTCTTATCTTCCTCAAGCTATGTTCCTCAATTAAACACCTTCTACAGATCCATGGTCAAATCCATCTCTCCTCTCTCCAAAATGACAGCTTTATCATCAGCGAGCTTGTACGGGTTTCATCACTATCCCTCGCCAAAGACCTTGCCTTTGCGCGAACCCTTCTGCTTCACTCTTCAGATTCGACTCCTTCTACTTGGAATATGCTCAGTAGAGGCTATTCTTCAAGTGATTCTCCTGTGGAATCGATTTGGGTTTACTCTGAGATGAAGAGACGAGGAATCAAACCTAATAAGCTCACTTTTCCTTTTCTTCTCAAGGCTTGTGCTTCGTTTTTAGGTCTCACTGCTGGGAGACAGATTCAAGTTGAGGTTTTGAAACATGGGTTTGATTTTGATGTATATGTTGGGAACAATTTGATCCATCTTTATGGTACTTGTAAGAAAACTTCTGATGCCAGGAAGGTGTTCGACGAAATGACTGAGAGAAATGTTGTTTCTTGGAACTCGATTATGACTGCTCTTGTTGAGAATGGTAAGTTAAATTTGGTGTTTGAGTGTTTTTGTGAGATGATTGGTAAGCGGTTTTGTCCAGATGAGACGACAATGGTGGTTTTGCTTTCGGCTTGTGGCGGTAACTTGAGCTTGGGGAAATTGGTGCATTCACAGGTGATGGTAAGAGAGTTAGAGTTAAACTGTAGACTAGGTACTGCACTTGTAGACATGTATGCAAAATCAGGTGGATTAGAGTATGCTAGGTTAGTTTTCGAAAGAATGGTTGACAAAAATGTTTGGACTTGGAGTGCCATGATTGTAGGATTAGCACAATATGGATTTGCAGAAGAAGCCCTTCAACTATTCTCGAAGATGATGAAAGAATCATCGGTGAGACCAAACTACGTAACATTTCTCGGTGTTTTATGCGCTTGTAGCCACACGGGATTGGTGGATGACGGGTACAAATATTTCCACGAAATGGAGAAAATACACAAGATCAAACCAATGATGATTCACTACGGAGCAATGGTAGATATCTTGGGACGTGCAGGTCGACTAAACGAGGCGTATGACTTCATAAAGAAAATGCCTTTTGAGCCTGATGCGGTTGTTTGGAGGACTCTACTCTCCGCTTGTAGTATCCATCACGATGAAGATGATGAGGGAATTGGTGAGAAAGTAAAGAAGAGATTGATTGAGTTAGAACCAAAGAGGAGTGGGAATTTGGTGATTGTGGCGAATAGGTTTGCGGAAGCGAGGATGTGGGCTGAGGCAGCAGAAGTTAGGAGAGTAATGAAGGAAACTAAGATGAAGAAGATCGCCGGAGAGAGTTGTCTAGAGCTAGGAGGGTCGTTTCATAGATTCTTCTCAGGGTATGATCCTCGTTCTGAATATGTATCCATCTATGAATTATTAGATTTGTTCAAGTTTCAGTTGACATGTGACTATCGTTTGGTGTCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

501

Amino Acids

56.95

Weight (kDa)

8.25

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	80 - 124	4.9e-07	PPR repeat family
PPR_2	PF13041	177 - 224	2.1e-10	PPR repeat family
E_motif	PF20431	402 - 459	3.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1089
Acc36I	ACCTGC	1 cut(s)	1079
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccI	GTMKAC	3 cut(s)	742, 762, 1093
AccII	CGCG	1 cut(s)	199
AciI	CCGC	5 cut(s)	625, 675, 1145, 1170, 1289
AclWI	GGATC	3 cut(s)	88, 457, 1412
AcsI	RAATTY	2 cut(s)	586, 1261
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	4 cut(s)	156, 478, 751, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	1018
AflIII	ACRYGT	2 cut(s)	765, 1478
AgsI	TTSAA	6 cut(s)	28, 270, 407, 421, 896, 1465
AjiI	CACGTC	1 cut(s)	1085
AjnI	CCWGG	2 cut(s)	32, 500
AluBI	AGCT	6 cut(s)	64, 135, 151, 340, 687, 1381
AluI	AGCT	6 cut(s)	64, 135, 151, 340, 687, 1381
Alw26I	GTCTC	5 cut(s)	310, 389, 391, 635, 925
AlwI	GGATC	3 cut(s)	88, 457, 1412
ApeKI	GCWGC	1 cut(s)	1313
ApoI	RAATTY	2 cut(s)	586, 1261
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
Asp700I	GAANNNNTTC	2 cut(s)	509, 891
AspLEI	GCGC	2 cut(s)	199, 968
AsuHPI	GGTGA	4 cut(s)	724, 940, 1223, 1279
AsuII	TTCGAA	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	475, 507
BbvCI	CCTCAGC	1 cut(s)	1308
BbvI	GCAGC	1 cut(s)	1325
BccI	CCATC	5 cut(s)	117, 474, 709, 1191, 1448
BciT130I	CCWGG	2 cut(s)	34, 502
BciVI	GTATCC	2 cut(s)	1190, 1447
BcoDI	GTCTC	5 cut(s)	310, 389, 391, 635, 925
BfaI	CTAG	4 cut(s)	746, 798, 1376, 1382
BfmI	CTRYAG	2 cut(s)	89, 739
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	2 cut(s)	1190, 1447
BisI	GCNGC	1 cut(s)	1314
BlsI	GCNGC	1 cut(s)	1315
Bme1390I	CCNGG	2 cut(s)	34, 502
BmgBI	CACGTC	1 cut(s)	1085
BmrFI	CCNGG	2 cut(s)	34, 502
BmsI	GCATC	2 cut(s)	487, 1132
Bpu10I	CCTNAGC	1 cut(s)	1308
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	3 cut(s)	44, 344, 703
Bsa29I	ATCGAT	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	943
BsaI	GGTCTC	2 cut(s)	389, 925
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	1 cut(s)	1018
Bse3DI	GCAATG	1 cut(s)	1071
BseBI	CCWGG	2 cut(s)	34, 502
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	997, 1305
BseLI	CCNNNNNNNGG	1 cut(s)	1018
BseMI	GCAATG	1 cut(s)	1071
BseMII	CTCAG	5 cut(s)	265, 297, 516, 1299, 1422
BseRI	GAGGAG	2 cut(s)	106, 1267
BseXI	GCAGC	1 cut(s)	1325
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	2 cut(s)	738, 1107
Bsh1236I	CGCG	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	1362
BslFI	GGGAC	1 cut(s)	1095
BslI	CCNNNNNNNGG	1 cut(s)	1018
BsmAI	GTCTC	5 cut(s)	310, 389, 391, 635, 925
BsmBI	CGTCTC	2 cut(s)	310, 635
BsmFI	GGGAC	1 cut(s)	1095
BsmI	GAATGC	1 cut(s)	703
Bso31I	GGTCTC	2 cut(s)	389, 925
Bsp119I	TTCGAA	1 cut(s)	810
Bsp143I	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	5 cut(s)	625, 675, 1145, 1170, 1289
BspCNI	CTCAG	5 cut(s)	264, 298, 517, 1300, 1421
BspDI	ATCGAT	1 cut(s)	290
BspFNI	CGCG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	3 cut(s)	88, 457, 1412
BspT104I	TTCGAA	1 cut(s)	810
BspTNI	GGTCTC	2 cut(s)	389, 925
BsrDI	GCAATG	1 cut(s)	1071
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	34, 502
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	3 cut(s)	223, 308, 1220
BstBAI	YACGTR	1 cut(s)	943
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	6 cut(s)	251, 306, 525, 1308, 1344, 1408
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	997, 1305
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	199, 968
BstKTI	GATC	5 cut(s)	96, 465, 1038, 1359, 1420
BstMAI	GTCTC	5 cut(s)	310, 389, 391, 635, 925
BstMBI	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
BstMWI	GCNNNNNNNGC	4 cut(s)	887, 972, 1135, 1313
BstNI	CCWGG	2 cut(s)	34, 502
BstNSI	RCATGY	2 cut(s)	769, 1482
BstSCI	CCNGG	2 cut(s)	32, 500
BstSFI	CTRYAG	2 cut(s)	89, 739
BstSNI	TACGTA	1 cut(s)	943
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	1325
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	290
BsuI	GTATCC	2 cut(s)	1190, 1447
BsuTUI	ATCGAT	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	1085
BtsCI	GGATG	2 cut(s)	997, 1305
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	199, 968
ClaI	ATCGAT	1 cut(s)	290
Csp6I	GTAC	4 cut(s)	155, 477, 750, 1000
CviAII	CATG	6 cut(s)	21, 98, 425, 766, 850, 1479
CviQI	GTAC	4 cut(s)	155, 477, 750, 1000
DdeI	CTNAG	6 cut(s)	251, 306, 525, 1308, 1344, 1408
DpnI	GATC	5 cut(s)	95, 464, 1037, 1358, 1419
DpnII	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
DrdI	GACNNNNNNGTC	1 cut(s)	1089
DseDI	GACNNNNNNGTC	1 cut(s)	1089
Eam1104I	CTCTTC	3 cut(s)	223, 308, 1220
EarI	CTCTTC	3 cut(s)	223, 308, 1220
Eco105I	TACGTA	1 cut(s)	943
Eco130I	CCWWGG	1 cut(s)	97
Eco31I	GGTCTC	2 cut(s)	389, 925
Eco32I	GATATC	1 cut(s)	1075
Eco57I	CTGAAG	1 cut(s)	204
EcoRII	CCWGG	2 cut(s)	32, 500
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	2 cut(s)	310, 635
FaeI	CATG	6 cut(s)	24, 101, 428, 769, 853, 1482
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	1 cut(s)	1095
FatI	CATG	6 cut(s)	20, 97, 424, 765, 849, 1478
FblI	GTMKAC	3 cut(s)	742, 762, 1093
Fnu4HI	GCNGC	1 cut(s)	1314
FokI	GGATG	2 cut(s)	1004, 1312
Fsp4HI	GCNGC	1 cut(s)	1314
FspBI	CTAG	4 cut(s)	746, 798, 1376, 1382
GlaI	GCGC	2 cut(s)	198, 967
GluI	GCNGC	1 cut(s)	1314
GsaI	CCCAGC	1 cut(s)	396
HapII	CCGG	1 cut(s)	1362
HhaI	GCGC	2 cut(s)	199, 968
Hin1II	CATG	6 cut(s)	24, 101, 428, 769, 853, 1482
Hin6I	GCGC	2 cut(s)	197, 966
HinP1I	GCGC	2 cut(s)	197, 966
HincII	GTYRAC	3 cut(s)	823, 1094, 1476
HindII	GTYRAC	3 cut(s)	823, 1094, 1476
HpaII	CCGG	1 cut(s)	1362
HphI	GGTGA	4 cut(s)	724, 940, 1223, 1279
Hpy166II	GTNNAC	6 cut(s)	301, 743, 763, 823, 1094, 1476
Hpy188I	TCNGA	6 cut(s)	16, 223, 307, 496, 1429, 1501
Hpy188III	TCNNGA	4 cut(s)	635, 904, 1187, 1376
Hpy8I	GTNNAC	6 cut(s)	301, 743, 763, 823, 1094, 1476
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	6 cut(s)	95, 215, 243, 499, 902, 1330
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4IV	ACGT	2 cut(s)	942, 1084
HpyCH4V	TGCA	5 cut(s)	703, 755, 773, 881, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	887, 972, 1135, 1313
HpyF3I	CTNAG	6 cut(s)	251, 306, 525, 1308, 1344, 1408
HpySE526I	ACGT	2 cut(s)	942, 1084
Hsp92II	CATG	6 cut(s)	24, 101, 428, 769, 853, 1482
HspAI	GCGC	2 cut(s)	197, 966
Kzo9I	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
LmnI	GCTCC	1 cut(s)	1061
Lsp1109I	GCAGC	1 cut(s)	1325
LweI	GCATC	2 cut(s)	487, 1132
MaeI	CTAG	4 cut(s)	746, 798, 1376, 1382
MaeII	ACGT	2 cut(s)	942, 1084
MaeIII	GTNAC	3 cut(s)	677, 943, 1481
MalI	GATC	5 cut(s)	95, 464, 1037, 1358, 1419
MboI	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	7 cut(s)	75, 457, 586, 695, 1206, 1261, 1448
MlyI	GAGTC	2 cut(s)	223, 1153
MroXI	GAANNNNTTC	2 cut(s)	509, 891
MseI	TTAA	3 cut(s)	78, 584, 734
MslI	CAYNNNNRTG	2 cut(s)	471, 1188
MspI	CCGG	1 cut(s)	1362
MspR9I	CCNGG	2 cut(s)	34, 502
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	34, 502
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	887, 972, 1135, 1313
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
NlaIII	CATG	6 cut(s)	24, 101, 428, 769, 853, 1482
NmuCI	GTSAC	1 cut(s)	1481
NspI	RCATGY	2 cut(s)	769, 1482
NspV	TTCGAA	1 cut(s)	810
PciI	ACATGT	2 cut(s)	765, 1478
PcsI	WCGNNNNNNNCGW	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	509, 891
PfeI	GAWTC	9 cut(s)	17, 224, 275, 287, 324, 403, 920, 1051, 1401
PflMI	CCANNNNNTGG	1 cut(s)	1018
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	1315
PleI	GAGTC	2 cut(s)	223, 1153
PpsI	GAGTC	2 cut(s)	223, 1153
Ppu21I	YACGTR	1 cut(s)	943
PscI	ACATGT	2 cut(s)	765, 1478
Psp6I	CCWGG	2 cut(s)	32, 500
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	32, 500
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	4 cut(s)	156, 478, 751, 1001
RsaNI	GTAC	4 cut(s)	155, 477, 750, 1000
RseI	CAYNNNNRTG	2 cut(s)	471, 1188
SalI	GTCGAC	1 cut(s)	1092
SaqAI	TTAA	3 cut(s)	78, 584, 734
SatI	GCNGC	1 cut(s)	1314
Sau3AI	GATC	5 cut(s)	93, 462, 1035, 1356, 1417
SchI	GAGTC	2 cut(s)	223, 1153
ScrFI	CCNGG	2 cut(s)	34, 502
SfaNI	GCATC	2 cut(s)	487, 1132
SfcI	CTRYAG	2 cut(s)	89, 739
SfuI	TTCGAA	1 cut(s)	810
SmiMI	CAYNNNNRTG	2 cut(s)	471, 1188
SmlI	CTYRAG	3 cut(s)	59, 359, 682
SmoI	CTYRAG	3 cut(s)	59, 359, 682
SnaBI	TACGTA	1 cut(s)	943
Sse9I	AATT	7 cut(s)	75, 457, 586, 695, 1206, 1261, 1448
SsiI	CCGC	5 cut(s)	625, 675, 1145, 1170, 1289
SspI	AATATT	1 cut(s)	1007
SspMI	CTAG	4 cut(s)	746, 798, 1376, 1382
StyD4I	CCNGG	2 cut(s)	32, 500
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	740
TaiI	ACGT	2 cut(s)	945, 1087
TaqI	TCGA	7 cut(s)	227, 290, 513, 551, 810, 905, 1093
TasI	AATT	7 cut(s)	75, 457, 586, 695, 1206, 1261, 1448
TfiI	GAWTC	9 cut(s)	17, 224, 275, 287, 324, 403, 920, 1051, 1401
Tru1I	TTAA	3 cut(s)	78, 584, 734
Tru9I	TTAA	3 cut(s)	78, 584, 734
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	1481
TseI	GCWGC	1 cut(s)	1313
Tsp45I	GTSAC	1 cut(s)	1481
TspGWI	ACGGA	1 cut(s)	1074
TspRI	CASTG	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	1018
XapI	RAATTY	2 cut(s)	586, 1261
XbaI	TCTAGA	1 cut(s)	1375
XceI	RCATGY	2 cut(s)	769, 1482
XmiI	GTMKAC	3 cut(s)	742, 762, 1093
XmnI	GAANNNNTTC	2 cut(s)	509, 891
XspI	CTAG	4 cut(s)	746, 798, 1376, 1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.