Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

13548677 .. 13549732

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGATGATTCAATTGATAGAATAGTGGCTGGAATGGAAGGAACCGTAATGACAGATGGAAATAGCAAAAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACAATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTGCATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCGGATCACTGGTTTAGCCAAACAGGTAACCAATATCTGCCATGACTATCTGCACATAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

148

Amino Acids

15.44

Weight (kDa)

5.41

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	35 - 135	1.1e-39	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	379
AclWI	GGATC	2 cut(s)	248, 389
AcsI	RAATTY	1 cut(s)	438
AcvI	CACGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
AlwI	GGATC	2 cut(s)	248, 389
ApeKI	GCWGC	5 cut(s)	41, 274, 317, 362, 376
ApoI	RAATTY	1 cut(s)	438
AsuHPI	GGTGA	3 cut(s)	350, 361, 380
BaeGI	GKGCMC	2 cut(s)	150, 180
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BauI	CACGAG	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	224
BbvI	GCAGC	5 cut(s)	53, 286, 329, 374, 388
BccI	CCATC	2 cut(s)	101, 161
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	5 cut(s)	42, 275, 318, 363, 377
BlsI	GCNGC	5 cut(s)	43, 276, 319, 364, 378
Bme1390I	CCNGG	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	28, 391
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	10, 61
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	28, 391
BseSI	GKGCMC	2 cut(s)	150, 180
BseXI	GCAGC	5 cut(s)	53, 286, 329, 374, 388
BsgI	GTGCAG	2 cut(s)	381, 413
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	150, 180
Bsp143I	GATC	4 cut(s)	253, 264, 330, 381
BspACI	CCGC	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	248, 389
BsrI	ACTGG	2 cut(s)	28, 391
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	4 cut(s)	253, 264, 330, 381
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	10, 61
BstKTI	GATC	4 cut(s)	256, 267, 333, 384
BstMBI	GATC	4 cut(s)	253, 264, 330, 381
BstNI	CCWGG	1 cut(s)	174
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	2 cut(s)	150, 180
BstV1I	GCAGC	5 cut(s)	53, 286, 329, 374, 388
BstXI	CCANNNNNNTGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	10, 61
BtsIMutI	CAGTG	2 cut(s)	21, 384
Cac8I	GCNNGC	1 cut(s)	150
CviAII	CATG	2 cut(s)	234, 419
CviJI	RGCY	5 cut(s)	80, 304, 343, 365, 395
CviKI_1	RGCY	5 cut(s)	80, 304, 343, 365, 395
DpnI	GATC	4 cut(s)	255, 266, 332, 383
DpnII	GATC	4 cut(s)	253, 264, 330, 381
Eco72I	CACGTG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	237, 422
FaiI	YATR	4 cut(s)	133, 235, 420, 434
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	233, 418
Fnu4HI	GCNGC	5 cut(s)	42, 275, 318, 363, 377
FokI	GGATG	2 cut(s)	17, 68
Fsp4HI	GCNGC	5 cut(s)	42, 275, 318, 363, 377
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	5 cut(s)	42, 275, 318, 363, 377
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	2 cut(s)	237, 422
HinfI	GANTC	2 cut(s)	59, 169
HphI	GGTGA	3 cut(s)	350, 361, 380
Hpy188I	TCNGA	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	7 cut(s)	41, 233, 248, 287, 362, 376, 430
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	237, 422
Kzo9I	GATC	4 cut(s)	253, 264, 330, 381
Lsp1109I	GCAGC	5 cut(s)	53, 286, 329, 374, 388
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	4 cut(s)	17, 196, 349, 403
MalI	GATC	4 cut(s)	255, 266, 332, 383
MboI	GATC	4 cut(s)	253, 264, 330, 381
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	150, 180
MluCI	AATT	3 cut(s)	63, 291, 438
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	7, 206, 316, 340
MseI	TTAA	1 cut(s)	442
MspA1I	CMGCKG	2 cut(s)	365, 379
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	253, 264, 330, 381
NlaIII	CATG	2 cut(s)	237, 422
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	196, 349
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	43, 276, 319, 364, 378
PleI	GAGTC	1 cut(s)	163
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	5 cut(s)	42, 275, 318, 363, 377
Sau3AI	GATC	4 cut(s)	253, 264, 330, 381
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	2 cut(s)	150, 180
SetI	ASST	7 cut(s)	217, 226, 263, 351, 361, 367, 405
SfcI	CTRYAG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	63, 291, 438
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	226
TasI	AATT	3 cut(s)	63, 291, 438
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	2 cut(s)	28, 391
TseFI	GTSAC	2 cut(s)	196, 349
TseI	GCWGC	5 cut(s)	41, 274, 317, 362, 376
Tsp45I	GTSAC	2 cut(s)	196, 349
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	28, 391
XapI	RAATTY	1 cut(s)	438
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.