Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000002.1

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1566

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000002.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 314 bp

gagggctatctgtgcgtcttgatatgaaaagatgcaggctgatttatcatttgcggatgaagcatgaccaaacgtttcacggtttaccaaaagagcagcacagagacggaaagagcaaaagtctggtagcataccatgaagttgggcacgccatctgtgggacattgactccagggcacgatgccgttcagaaagtgaccctagttccaggaggtcaagcacgtggtcttacatggttcattcatgcagatgatcctaccttgatctccaagcagcaactatttgcaagaattgttggtgggctttggtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

103

Amino Acids

11.63

Weight (kDa)

9.76

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	1 cut(s)	247
AcvI	CACGTG	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	171, 207
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	96, 273
BaeGI	GKGCMC	2 cut(s)	149, 179
BbrPI	CACGTG	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	108, 285
BccI	CCATC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	173, 209
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	202
BisI	GCNGC	2 cut(s)	97, 274
BlsI	GCNGC	2 cut(s)	98, 275
Bme1390I	CCNGG	2 cut(s)	173, 209
BmrFI	CCNGG	2 cut(s)	173, 209
BmsI	GCATC	2 cut(s)	22, 171
BpmI	CTGGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	173, 209
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseSI	GKGCMC	2 cut(s)	149, 179
BseXI	GCAGC	2 cut(s)	108, 285
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	98
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	149, 179
Bsp143I	GATC	2 cut(s)	252, 263
BspACI	CCGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	252, 263
Bst2UI	CCWGG	2 cut(s)	173, 209
Bst4CI	ACNGT	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	37, 149
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	255, 266
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	252, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 60
BstNI	CCWGG	2 cut(s)	173, 209
BstSCI	CCNGG	2 cut(s)	171, 207
BstSLI	GKGCMC	2 cut(s)	149, 179
BstV1I	GCAGC	2 cut(s)	108, 285
BstXI	CCANNNNNNTGG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	37, 149
CseI	GACGC	1 cut(s)	4
CviAII	CATG	4 cut(s)	64, 136, 233, 244
CviJI	RGCY	3 cut(s)	6, 39, 303
CviKI_1	RGCY	3 cut(s)	6, 39, 303
DpnI	GATC	2 cut(s)	254, 265
DpnII	GATC	2 cut(s)	252, 263
Eco72I	CACGTG	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	171, 207
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	4 cut(s)	67, 139, 236, 247
FaiI	YATR	6 cut(s)	25, 65, 132, 137, 234, 245
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	63, 135, 232, 243
Fnu4HI	GCNGC	2 cut(s)	97, 274
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	97, 274
FspBI	CTAG	1 cut(s)	202
GluI	GCNGC	2 cut(s)	97, 274
GsuI	CTGGAG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	4 cut(s)	67, 139, 236, 247
HinfI	GANTC	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	73, 222
HpyCH4V	TGCA	3 cut(s)	35, 247, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 60
HpySE526I	ACGT	2 cut(s)	73, 222
Hsp92II	CATG	4 cut(s)	67, 139, 236, 247
Kzo9I	GATC	2 cut(s)	252, 263
LpnPI	CCDG	6 cut(s)	21, 109, 158, 185, 194, 221
Lsp1109I	GCAGC	2 cut(s)	108, 285
LweI	GCATC	2 cut(s)	22, 171
MaeI	CTAG	1 cut(s)	202
MaeII	ACGT	2 cut(s)	73, 222
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	2 cut(s)	254, 265
MboI	GATC	2 cut(s)	252, 263
MhlI	GDGCHC	2 cut(s)	149, 179
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	205
MslI	CAYNNNNRTG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	173, 209
MvaI	CCWGG	2 cut(s)	173, 209
MwoI	GCNNNNNNNGC	2 cut(s)	12, 60
NdeII	GATC	2 cut(s)	252, 263
NlaIII	CATG	4 cut(s)	67, 139, 236, 247
NmuCI	GTSAC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	98, 275
PleI	GAGTC	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	223
Psp1406I	AACGTT	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	171, 207
PspCI	CACGTG	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	171, 207
RseI	CAYNNNNRTG	1 cut(s)	248
SatI	GCNGC	2 cut(s)	97, 274
Sau3AI	GATC	2 cut(s)	252, 263
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	173, 209
SduI	GDGCHC	2 cut(s)	149, 179
SetI	ASST	4 cut(s)	76, 216, 225, 262
SfaNI	GCATC	2 cut(s)	22, 171
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	171, 207
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	76, 225
TasI	AATT	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	2 cut(s)	96, 273
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	5 cut(s)	40, 73, 152, 228, 232
TspGWI	ACGGA	1 cut(s)	122
XspI	CTAG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.