Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

3214460 .. 3215647

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCTCCGCAGCGGTGTTCGACCCAACCAGCTGACCTTCCCTTTCCTGATCAAGTGTTGCGCTTCGGCCGCTGCGCTGAAAGAAGGGAAGCAAGGGCATGTGGGAATTGTGAAGTGTGGGTTGGACTGTGATGTGTATGTTCAGAACAATCTGGTTCATTTTTATGGTGAGTGTAAGAAAATTAAGGATGCGCGGAAAGTGTTTGATGAAATGTTTGAGAGAAGTGTTGTTTCATGGAATGCGGTTATAACCGCTTGCGTTGAGAATTTCTGGTTCGACGAGGGGATTGAAGACTTTGTGAAGATGAGGGATTGTGGGTTTGAGCCGGATGAGACTACGATGGTGGTTGTGTTGAACACGTCCTCGGAGCTTGGGAACTTGAGCATTGGGAGATGGGTTCATTCCCAAGTAATTGTAAGAGCGTTGGGTTTGAATTGTCAGTTGGGTACTGCACTTGTGGACATGTATGCAAAGTCTGGGGCTTTGGGTTATGCTAGGATAGTTTTTGATAAGATTGAGATGCAGAATGTGCGAACGTGGAGTGCCATGATTGTAGGCTCACCAATAAACCCGAATTACGTCACCTTTCTGGGGGTTCTCTGTGCTTGTAGCCATGCTGGACTGGTGGAGGATGGGTACCGATACTTTAATGATATGGAACACGTACATGGGATTACACCCATGATGGTGCACTATCGTGCCATGGTGGATATCTTAGGCCGTGCTGGCTGTCTCAACGAGGCTTATAGCTTCATGATGAGCATGCCCGTTGACCCCGATCCCGTGATATGGAGAACATTGCTGAGTGCATGCACTACTCACAGTGCCAAGGATAACAAAGGGGTAGGAAACAAAGTAAGAGAGAAGTTGTTTGAATTGGAGCCAAAGAGGGGTGGGAATCTTGTGATGGCCGCAAACATGTTTGCCGAAGTTGAGATGTGTGACAAAGCCGCAAATTTGAGGAAAGTTATGAAAGAAAGACGAATGAAGAAGATGGCAGGGGAGAGTTGCGTTGAGTTAGGCGGATCCATCCATAAGTTCTTTTCTGGCTATGATTCCCAAGCTGATTATGATGATGTCTACCAGATACGAGATGTATTGAGCTTGCACATGAAGTTGGTTAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

377

Amino Acids

42.14

Weight (kDa)

6.56

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	1080
AccII	CGCG	1 cut(s)	193
AciI	CCGC	9 cut(s)	7, 12, 69, 193, 242, 252, 912, 951, 1023
AclWI	GGATC	3 cut(s)	773, 1020, 1033
AcoI	YGGCCR	2 cut(s)	66, 909
AcsI	RAATTY	2 cut(s)	265, 955
AfaI	GTAC	3 cut(s)	448, 638, 666
AfiI	CCNNNNNNNGG	3 cut(s)	591, 789, 890
AflIII	ACRYGT	5 cut(s)	357, 462, 661, 918, 1125
AgsI	TTSAA	4 cut(s)	290, 355, 433, 875
AjiI	CACGTC	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 425, 457
AleI	CACNNNNGTG	1 cut(s)	696
AluBI	AGCT	5 cut(s)	31, 370, 750, 1064, 1104
AluI	AGCT	5 cut(s)	31, 370, 750, 1064, 1104
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	326, 737
Alw44I	GTGCAC	1 cut(s)	689
AlwI	GGATC	3 cut(s)	773, 1020, 1033
AoxI	GGCC	3 cut(s)	66, 718, 909
ApaLI	GTGCAC	1 cut(s)	689
ApeKI	GCWGC	2 cut(s)	9, 71
ApoI	RAATTY	2 cut(s)	265, 955
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	3 cut(s)	62, 76, 193
AsuHPI	GGTGA	3 cut(s)	179, 552, 574
BaeGI	GKGCMC	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	1025
BanI	GGYRCC	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	21, 58
BccI	CCATC	7 cut(s)	334, 387, 626, 679, 901, 988, 1037
BceAI	ACGGC	1 cut(s)	705
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	326, 737
BfaI	CTAG	1 cut(s)	495
BglI	GCCNNNNNGGC	1 cut(s)	726
BisI	GCNGC	5 cut(s)	10, 69, 72, 912, 951
BlsI	GCNGC	5 cut(s)	11, 70, 73, 913, 952
BmgBI	CACGTC	1 cut(s)	360
BmiI	GGNNCC	3 cut(s)	638, 882, 1027
BmsI	GCATC	2 cut(s)	178, 510
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	3 cut(s)	363, 702, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	591, 789, 890
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	797
BseDI	CCNNGG	3 cut(s)	363, 702, 828
BseGI	GGATG	4 cut(s)	193, 334, 637, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	591, 789, 890
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	1 cut(s)	794
BseNI	ACTGG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	693
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	21, 58
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	68, 720, 911
BshNI	GGYRCC	1 cut(s)	636
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	591, 789, 890
BsmAI	GTCTC	2 cut(s)	326, 737
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	68, 720, 911
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	48, 778, 1025
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	9 cut(s)	7, 12, 69, 193, 242, 252, 912, 951, 1023
BspANI	GGCC	3 cut(s)	68, 720, 911
BspCNI	CTCAG	1 cut(s)	795
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	3 cut(s)	638, 882, 1027
BspPI	GGATC	3 cut(s)	773, 1020, 1033
BspT107I	GGYRCC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	3 cut(s)	363, 702, 828
BssMI	GATC	3 cut(s)	48, 778, 1025
BssT1I	CCWWGG	2 cut(s)	702, 828
Bst4CI	ACNGT	2 cut(s)	128, 824
BstAPI	GCANNNNNTGC	1 cut(s)	529
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	5 cut(s)	256, 727, 764, 811, 1106
BstDEI	CTNAG	2 cut(s)	715, 803
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	4 cut(s)	193, 334, 637, 1029
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	3 cut(s)	62, 76, 193
BstKTI	GATC	3 cut(s)	51, 781, 1028
BstMAI	GTCTC	2 cut(s)	326, 737
BstMBI	GATC	3 cut(s)	48, 778, 1025
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 529, 726
BstNSI	RCATGY	6 cut(s)	101, 466, 766, 813, 922, 1129
BstSLI	GKGCMC	1 cut(s)	693
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	21, 58
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1025
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	68, 720, 911
BtgI	CCRYGG	1 cut(s)	702
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	193, 334, 637, 1029
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	5 cut(s)	256, 727, 764, 811, 1106
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	3 cut(s)	62, 76, 193
Csp6I	GTAC	3 cut(s)	447, 637, 665
CviQI	GTAC	3 cut(s)	447, 637, 665
DdeI	CTNAG	2 cut(s)	715, 803
DpnI	GATC	3 cut(s)	50, 780, 1027
DpnII	GATC	3 cut(s)	48, 778, 1025
EaeI	YGGCCR	2 cut(s)	66, 909
EagI	CGGCCG	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	1038
EclXI	CGGCCG	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	702, 828
Eco32I	GATATC	1 cut(s)	712
Eco52I	CGGCCG	1 cut(s)	66
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	702, 828
ErhI	CCWWGG	2 cut(s)	702, 828
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	5 cut(s)	10, 69, 72, 912, 951
FokI	GGATG	4 cut(s)	200, 341, 644, 1016
Fsp4HI	GCNGC	5 cut(s)	10, 69, 72, 912, 951
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	3 cut(s)	61, 75, 192
GluI	GCNGC	5 cut(s)	10, 69, 72, 912, 951
HaeIII	GGCC	3 cut(s)	68, 720, 911
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	3 cut(s)	62, 76, 193
Hin6I	GCGC	3 cut(s)	60, 74, 191
HinP1I	GCGC	3 cut(s)	60, 74, 191
HincII	GTYRAC	2 cut(s)	772, 1123
HindII	GTYRAC	2 cut(s)	772, 1123
HinfI	GANTC	2 cut(s)	898, 1055
HpaI	GTTAAC	1 cut(s)	1123
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	3 cut(s)	179, 552, 574
Hpy166II	GTNNAC	5 cut(s)	460, 691, 772, 1081, 1123
Hpy188I	TCNGA	2 cut(s)	144, 367
Hpy188III	TCNNGA	2 cut(s)	46, 754
Hpy8I	GTNNAC	5 cut(s)	460, 691, 772, 1081, 1123
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	46, 77
HpyCH4III	ACNGT	2 cut(s)	128, 824
HpyCH4IV	ACGT	4 cut(s)	359, 536, 579, 663
HpyCH4V	TGCA	7 cut(s)	452, 470, 523, 691, 809, 813, 1108
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 529, 726
HpyF3I	CTNAG	2 cut(s)	715, 803
HpySE526I	ACGT	4 cut(s)	359, 536, 579, 663
HspAI	GCGC	3 cut(s)	60, 74, 191
KpnI	GGTACC	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	1123
Kzo9I	GATC	3 cut(s)	48, 778, 1025
LmnI	GCTCC	3 cut(s)	9, 367, 880
Lsp1109I	GCAGC	2 cut(s)	21, 58
LweI	GCATC	2 cut(s)	178, 510
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	4 cut(s)	359, 536, 579, 663
MaeIII	GTNAC	2 cut(s)	580, 941
MalI	GATC	3 cut(s)	50, 780, 1027
MboI	GATC	3 cut(s)	48, 778, 1025
MboII	GAAGA	4 cut(s)	302, 313, 1000, 1003
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	8 cut(s)	105, 180, 265, 411, 433, 574, 875, 955
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	7 cut(s)	274, 300, 373, 622, 733, 882, 954
MseI	TTAA	3 cut(s)	183, 648, 1122
MslI	CAYNNNNRTG	4 cut(s)	162, 666, 686, 696
MspA1I	CMGCKG	3 cut(s)	12, 31, 71
MspI	CCGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	244
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	68, 529, 726
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	48, 778, 1025
NlaIV	GGNNCC	3 cut(s)	638, 882, 1027
NmuCI	GTSAC	2 cut(s)	580, 941
NspI	RCATGY	6 cut(s)	101, 466, 766, 813, 922, 1129
OliI	CACNNNNGTG	1 cut(s)	696
PaeI	GCATGC	2 cut(s)	766, 813
PagI	TCATGA	1 cut(s)	753
PciI	ACATGT	3 cut(s)	462, 918, 1125
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	898, 1055
PkrI	GCNGC	5 cut(s)	11, 70, 73, 913, 952
Ppu21I	YACGTR	1 cut(s)	664
PscI	ACATGT	3 cut(s)	462, 918, 1125
PsiI	TTATAA	1 cut(s)	248
PspN4I	GGNNCC	3 cut(s)	638, 882, 1027
PsuI	RGATCY	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	448, 638, 666
RsaNI	GTAC	3 cut(s)	447, 637, 665
RseI	CAYNNNNRTG	4 cut(s)	162, 666, 686, 696
SaqAI	TTAA	3 cut(s)	183, 648, 1122
SatI	GCNGC	5 cut(s)	10, 69, 72, 912, 951
Sau3AI	GATC	3 cut(s)	48, 778, 1025
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	2 cut(s)	178, 510
SmiMI	CAYNNNNRTG	4 cut(s)	162, 666, 686, 696
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
SphI	GCATGC	2 cut(s)	766, 813
Sse9I	AATT	8 cut(s)	105, 180, 265, 411, 433, 574, 875, 955
SsiI	CCGC	9 cut(s)	7, 12, 69, 193, 242, 252, 912, 951, 1023
SspMI	CTAG	1 cut(s)	495
StyI	CCWWGG	2 cut(s)	702, 828
TaaI	ACNGT	2 cut(s)	128, 824
TaiI	ACGT	4 cut(s)	362, 539, 582, 666
TaqI	TCGA	2 cut(s)	19, 276
TasI	AATT	8 cut(s)	105, 180, 265, 411, 433, 574, 875, 955
TauI	GCSGC	3 cut(s)	71, 914, 953
TfiI	GAWTC	2 cut(s)	898, 1055
Tru1I	TTAA	3 cut(s)	183, 648, 1122
Tru9I	TTAA	3 cut(s)	183, 648, 1122
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	2 cut(s)	580, 941
TseI	GCWGC	2 cut(s)	9, 71
Tsp45I	GTSAC	2 cut(s)	580, 941
TspDTI	ATGAA	8 cut(s)	146, 222, 222, 389, 742, 986, 1001, 1127
TspRI	CASTG	1 cut(s)	829
VneI	GTGCAC	1 cut(s)	689
XapI	RAATTY	2 cut(s)	265, 955
XceI	RCATGY	6 cut(s)	101, 466, 766, 813, 922, 1129
XmiI	GTMKAC	1 cut(s)	1080
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.