Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

38775775 .. 38780080

Gene Structure 4306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGCGGTCCTGGTGGGCCTGGGTTTCCCCTCTCCTTTGGTCAGTCTAAAGCCAAGTTCCAAATGGAACCAAACACTGGAGTGACATTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTGTAGAGGTGGTGGAGTTCTTAAAGAAGCCTGAGAGATTCACTGCTGTGGGAGCTCGCATTCCTAAAGGGGGTTCTTCTTGTCGGCCCTCCAGGAACTGGAAAGACTCTGCTAGCGAAGGCAATTGCTGGCGAAGCTGGTGTTCCTTTTTCTCCATCTCAGGTTCTGAGTTTGTTGAAATGTTCGTTGGTGTTGGTGCTTCCCGAGTCCGTGATCTTTTTAAGAAGGCTAAGGAAAATGCACCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGACGGCAAAGAGGAACTGGAATTGGTGGAGGCAATGATGAAAGAGAACAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGCAGATATTCTTGACTCTGCCTTGTTGAGGCCTGGCCGGTTTGACAGGCAGGTGTCTGTTGATGTTCCAGACGTACGTGGCAGAACAGATATCTTGAAGGTTCATGCTAGCAATAAGAAGTTTGAGGGAAATGTTTCCCTTGATGTAGTTGCTATGAGGACACCTGGTTTTAGTGGAGCAGATCTTGCCAACCTCCTAAATGAAGCAGCTATATTGGCTGGTCGGCGTGGGAAGTCAGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGAATAGTGGCTGGAATGGAAGGAACAGTAATGACAGACGGAAAGAGCAAAAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

350

Amino Acids

37.73

Weight (kDa)

5.92

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	90 - 199	1.4e-31	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	222 - 265	6.6e-13	AAA+ lid domain
Peptidase_M41	PF01434	281 - 338	4.5e-20	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccB7I	CCANNNNNTGG	2 cut(s)	77, 225
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	986
AcoI	YGGCCR	1 cut(s)	568
AcvI	CACGTG	1 cut(s)	962
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	5 cut(s)	77, 197, 225, 561, 897
AgsI	TTSAA	3 cut(s)	305, 631, 801
AjnI	CCWGG	6 cut(s)	10, 19, 218, 565, 697, 910
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AleI	CACNNNNGTG	2 cut(s)	80, 173
AluBI	AGCT	4 cut(s)	182, 264, 469, 743
AluI	AGCT	4 cut(s)	182, 264, 469, 743
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	986
AlwNI	CAGNNNCTG	2 cut(s)	225, 293
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	4 cut(s)	17, 212, 563, 568
ApeKI	GCWGC	3 cut(s)	521, 740, 1013
Asp700I	GAANNNNTTC	1 cut(s)	667
AspS9I	GGNCC	3 cut(s)	8, 17, 213
AsuNHI	GCTAGC	2 cut(s)	239, 641
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	2 cut(s)	888, 918
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BanII	GRGCYC	1 cut(s)	184
BauI	CACGAG	1 cut(s)	948
BbrPI	CACGTG	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	533, 752, 1025
BccI	CCATC	3 cut(s)	290, 479, 899
BceAI	ACGGC	2 cut(s)	425, 908
BciT130I	CCWGG	6 cut(s)	12, 21, 220, 567, 699, 912
BfaI	CTAG	3 cut(s)	240, 642, 941
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	3 cut(s)	522, 741, 1014
BlsI	GCNGC	3 cut(s)	523, 742, 1015
Bme1390I	CCNGG	6 cut(s)	12, 21, 220, 567, 699, 912
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	3 cut(s)	8, 17, 213
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	6 cut(s)	12, 21, 220, 567, 699, 912
BmsI	GCATC	2 cut(s)	388, 910
BmtI	GCTAGC	2 cut(s)	243, 645
BpmI	CTGGAG	3 cut(s)	99, 202, 894
Bpu10I	CCTNAGC	1 cut(s)	357
BsaAI	YACGTR	2 cut(s)	611, 962
BsaJI	CCNNGG	2 cut(s)	20, 911
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 197, 225, 561, 897
Bse118I	RCCGGY	1 cut(s)	570
Bse1I	ACTGG	4 cut(s)	82, 230, 427, 508
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	6 cut(s)	12, 21, 220, 567, 699, 912
BseDI	CCNNGG	2 cut(s)	20, 911
BseGI	GGATG	2 cut(s)	115, 490
BseLI	CCNNNNNNNGG	5 cut(s)	77, 197, 225, 561, 897
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	3 cut(s)	150, 285, 300
BseNI	ACTGG	4 cut(s)	82, 230, 427, 508
BseSI	GKGCMC	2 cut(s)	888, 918
BseXI	GCAGC	3 cut(s)	533, 752, 1025
BseYI	CCCAGC	1 cut(s)	101
BshFI	GGCC	4 cut(s)	19, 214, 565, 570
BsiHKAI	GWGCWC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	571
BsiWI	CGTACG	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	5 cut(s)	77, 197, 225, 561, 897
BsmFI	GGGAC	1 cut(s)	913
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	4 cut(s)	19, 214, 565, 570
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	184, 888, 918
Bsp143I	GATC	4 cut(s)	340, 715, 991, 1002
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	4 cut(s)	19, 214, 565, 570
BspCNI	CTCAG	3 cut(s)	151, 286, 299
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	574
BspOI	GCTAGC	2 cut(s)	243, 645
BspPI	GGATC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	82, 230, 427, 508
BssAI	RCCGGY	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	20, 911
BssMI	GATC	4 cut(s)	340, 715, 991, 1002
BssSI	CACGAG	1 cut(s)	948
Bst2BI	CACGAG	1 cut(s)	948
Bst2UI	CCWGG	6 cut(s)	12, 21, 220, 567, 699, 912
Bst4CI	ACNGT	1 cut(s)	835
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBAI	YACGTR	2 cut(s)	611, 962
BstC8I	GCNNGC	5 cut(s)	184, 241, 257, 643, 888
BstDEI	CTNAG	4 cut(s)	159, 286, 294, 357
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	115, 490
BstKTI	GATC	4 cut(s)	343, 718, 994, 1005
BstMBI	GATC	4 cut(s)	340, 715, 991, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 261, 719, 749
BstNI	CCWGG	6 cut(s)	12, 21, 220, 567, 699, 912
BstSCI	CCNGG	6 cut(s)	10, 19, 218, 565, 697, 910
BstSFI	CTRYAG	1 cut(s)	984
BstSLI	GKGCMC	2 cut(s)	888, 918
BstV1I	GCAGC	3 cut(s)	533, 752, 1025
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	881
BstYI	RGATCY	1 cut(s)	715
BsuRI	GGCC	4 cut(s)	19, 214, 565, 570
BtsCI	GGATG	2 cut(s)	115, 490
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	75, 168, 501
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	5 cut(s)	184, 241, 257, 643, 888
CaiI	CAGNNNCTG	2 cut(s)	225, 293
Cfr10I	RCCGGY	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	8, 17, 213
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	2 cut(s)	638, 972
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	4 cut(s)	159, 286, 294, 357
DpnI	GATC	4 cut(s)	342, 717, 993, 1004
DpnII	GATC	4 cut(s)	340, 715, 991, 1002
EaeI	YGGCCR	1 cut(s)	568
Ecl136II	GAGCTC	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	182
Eco72I	CACGTG	1 cut(s)	962
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoRII	CCWGG	6 cut(s)	10, 19, 218, 565, 697, 910
EcoRV	GATATC	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	2 cut(s)	641, 975
FaiI	YATR	5 cut(s)	639, 689, 746, 871, 973
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	2 cut(s)	637, 971
Fnu4HI	GCNGC	3 cut(s)	522, 741, 1014
FokI	GGATG	2 cut(s)	122, 497
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	522, 741, 1014
FspBI	CTAG	3 cut(s)	240, 642, 941
GluI	GCNGC	3 cut(s)	522, 741, 1014
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	3 cut(s)	99, 202, 894
HaeIII	GGCC	4 cut(s)	19, 214, 565, 570
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	2 cut(s)	641, 975
HinfI	GANTC	6 cut(s)	165, 233, 333, 548, 797, 907
HpaII	CCGG	1 cut(s)	571
Hpy188I	TCNGA	2 cut(s)	295, 930
Hpy188III	TCNNGA	4 cut(s)	330, 545, 602, 628
HpyAV	CCTTC	4 cut(s)	239, 346, 625, 821
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	3 cut(s)	606, 610, 961
HpyCH4V	TGCA	5 cut(s)	368, 375, 521, 986, 1026
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 261, 719, 749
HpyF3I	CTNAG	4 cut(s)	159, 286, 294, 357
HpySE526I	ACGT	3 cut(s)	606, 610, 961
Hsp92II	CATG	2 cut(s)	641, 975
Kzo9I	GATC	4 cut(s)	340, 715, 991, 1002
LmnI	GCTCC	2 cut(s)	179, 710
Lsp1109I	GCAGC	3 cut(s)	533, 752, 1025
LweI	GCATC	2 cut(s)	388, 910
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	3 cut(s)	240, 642, 941
MaeII	ACGT	3 cut(s)	606, 610, 961
MaeIII	GTNAC	3 cut(s)	82, 497, 934
MalI	GATC	4 cut(s)	342, 717, 993, 1004
MboI	GATC	4 cut(s)	340, 715, 991, 1002
MboII	GAAGA	1 cut(s)	195
MfeI	CAATTG	2 cut(s)	250, 801
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	3 cut(s)	184, 888, 918
MluCI	AATT	6 cut(s)	250, 393, 426, 774, 801, 1030
MlyI	GAGTC	4 cut(s)	227, 342, 542, 901
MmeI	TCCRAC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	3 cut(s)	149, 348, 462
MslI	CAYNNNNRTG	2 cut(s)	80, 173
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	6 cut(s)	12, 21, 220, 567, 699, 912
MunI	CAATTG	2 cut(s)	250, 801
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	6 cut(s)	12, 21, 220, 567, 699, 912
MwoI	GCNNNNNNNGC	4 cut(s)	179, 261, 719, 749
NdeII	GATC	4 cut(s)	340, 715, 991, 1002
NheI	GCTAGC	2 cut(s)	239, 641
NlaIII	CATG	2 cut(s)	641, 975
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	82, 934
OliI	CACNNNNGTG	2 cut(s)	80, 173
PaqCI	CACCTGC	1 cut(s)	574
PceI	AGGCCT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	165, 797
Pfl23II	CGTACG	1 cut(s)	607
PflMI	CCANNNNNTGG	2 cut(s)	77, 225
PfoI	TCCNGGA	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	523, 742, 1015
PleI	GAGTC	4 cut(s)	227, 341, 542, 901
PmaCI	CACGTG	1 cut(s)	962
PmlI	CACGTG	1 cut(s)	962
PpsI	GAGTC	4 cut(s)	227, 341, 542, 901
Ppu21I	YACGTR	2 cut(s)	611, 962
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	6 cut(s)	10, 19, 218, 565, 697, 910
PspCI	CACGTG	1 cut(s)	962
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	6 cut(s)	10, 19, 218, 565, 697, 910
PspLI	CGTACG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	8, 17, 213
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	2 cut(s)	225, 293
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	2 cut(s)	80, 173
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	149, 348, 462
SatI	GCNGC	3 cut(s)	522, 741, 1014
Sau3AI	GATC	4 cut(s)	340, 715, 991, 1002
Sau96I	GGNCC	3 cut(s)	8, 17, 213
SchI	GAGTC	4 cut(s)	227, 342, 542, 901
ScrFI	CCNGG	6 cut(s)	12, 21, 220, 567, 699, 912
SduI	GDGCHC	3 cut(s)	184, 888, 918
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	2 cut(s)	388, 910
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	80, 173
Sse9I	AATT	6 cut(s)	250, 393, 426, 774, 801, 1030
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	3 cut(s)	240, 642, 941
SstI	GAGCTC	1 cut(s)	184
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	6 cut(s)	10, 19, 218, 565, 697, 910
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	3 cut(s)	609, 613, 964
TasI	AATT	6 cut(s)	250, 393, 426, 774, 801, 1030
TfiI	GAWTC	2 cut(s)	165, 797
Tru1I	TTAA	3 cut(s)	149, 348, 462
Tru9I	TTAA	3 cut(s)	149, 348, 462
TscAI	CASTG	3 cut(s)	82, 175, 508
TseFI	GTSAC	2 cut(s)	82, 934
TseI	GCWGC	3 cut(s)	521, 740, 1013
Tsp45I	GTSAC	2 cut(s)	82, 934
TspDTI	ATGAA	7 cut(s)	126, 405, 459, 626, 750, 768, 967
TspGWI	ACGGA	2 cut(s)	326, 861
TspRI	CASTG	3 cut(s)	82, 175, 508
Van91I	CCANNNNNTGG	2 cut(s)	77, 225
VpaK11BI	GGWCC	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	240, 642, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.