Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

3230952 .. 3231515

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCTCCGCAGCGGTGTTCGACCCAACCAGCTGACCTTCCCTTTCCTGATCAAGTGTTGCGCTTCGGCCGCTGCGCTGAAAGAAGGGAAGCAAGGGCATGTGGGAGTTTTGAAGTGTGGGTTGGACTGTGATGTGTATGTTCAGAACAATCTGGTTCATTTTTATGGTGAGTGTAAGAAAATTAAGGATGCGCGGAAAGTGTTTGATGAAATGTTTGAGAGAAGTGTTGTTTCATGTAATGCGGTTATAACCGCTTGCGTTGAGAATTTCTGGTTCGACGAGGGGATTGAATACTTTGTGAAGATGAGGAATTGTGGGTTTGAGCCGGATGAGACTACGATGGTGGTTGTGTTGAACGCATCCTCGGAGCTTGGGAACTTGAGCATTGGGAGATGGGTTCATTCCCAAGTAATTGTAAGAGGGTTGGCTTTGAATTGTCAGTTGGGTACGGCGCTTGTGGACATGTATGCAAAGTCTGGGGCTTTGGGTTATGCTAGGATAGTTTTCGATAAGATGGAGACGCGGAATGTGTGGTCGTGGAGTGCCATGATAACAAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

188

Amino Acids

20.87

Weight (kDa)

8.06

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 120	1.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccII	CGCG	2 cut(s)	193, 523
AciI	CCGC	7 cut(s)	7, 12, 69, 193, 242, 252, 523
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	4 cut(s)	112, 290, 355, 433
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 425, 457
AluBI	AGCT	2 cut(s)	31, 370
AluI	AGCT	2 cut(s)	31, 370
Alw26I	GTCTC	2 cut(s)	326, 512
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	9, 71
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	4 cut(s)	62, 76, 193, 454
AsuHPI	GGTGA	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	21, 58
BccI	CCATC	3 cut(s)	334, 387, 508
BceAI	ACGGC	1 cut(s)	465
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	326, 512
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	455
BisI	GCNGC	3 cut(s)	10, 69, 72
BlsI	GCNGC	3 cut(s)	11, 70, 73
BmsI	GCATC	2 cut(s)	178, 368
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	193, 334, 359
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	21, 58
Bsh1236I	CGCG	2 cut(s)	193, 523
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	68
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	326, 512
BsmBI	CGTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	7 cut(s)	7, 12, 69, 193, 242, 252, 523
BspANI	GGCC	1 cut(s)	68
BspFNI	CGCG	2 cut(s)	193, 523
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	193, 334, 359
BstFNI	CGCG	2 cut(s)	193, 523
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	4 cut(s)	62, 76, 193, 454
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	326, 512
BstMBI	GATC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	101, 466
BstUI	CGCG	2 cut(s)	193, 523
BstV1I	GCAGC	2 cut(s)	21, 58
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	193, 334, 359
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	4 cut(s)	62, 76, 193, 454
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	4 cut(s)	98, 234, 463, 547
CviJI	RGCY	6 cut(s)	31, 68, 325, 370, 428, 482
CviKI_1	RGCY	6 cut(s)	31, 68, 325, 370, 428, 482
CviQI	GTAC	1 cut(s)	447
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	4 cut(s)	101, 237, 466, 550
FaiI	YATR	9 cut(s)	99, 138, 165, 235, 248, 464, 468, 492, 548
FatI	CATG	4 cut(s)	97, 233, 462, 546
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	10, 69, 72
FokI	GGATG	3 cut(s)	200, 341, 346
Fsp4HI	GCNGC	3 cut(s)	10, 69, 72
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	4 cut(s)	61, 75, 192, 453
GluI	GCNGC	3 cut(s)	10, 69, 72
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	529
HhaI	GCGC	4 cut(s)	62, 76, 193, 454
Hin1II	CATG	4 cut(s)	101, 237, 466, 550
Hin6I	GCGC	4 cut(s)	60, 74, 191, 452
HinP1I	GCGC	4 cut(s)	60, 74, 191, 452
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	144, 367
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	46, 77
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	4 cut(s)	101, 237, 466, 550
HspAI	GCGC	4 cut(s)	60, 74, 191, 452
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	9, 367
LpnPI	CCDG	6 cut(s)	41, 59, 137, 256, 339, 462
Lsp1109I	GCAGC	2 cut(s)	21, 58
LweI	GCATC	2 cut(s)	178, 368
MaeI	CTAG	1 cut(s)	495
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	313
MluCI	AATT	5 cut(s)	180, 265, 310, 411, 433
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	274, 300, 373, 413
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	3 cut(s)	12, 31, 71
MspI	CCGG	1 cut(s)	326
MvnI	CGCG	2 cut(s)	193, 523
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	101, 237, 466, 550
NspI	RCATGY	2 cut(s)	101, 466
PciI	ACATGT	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	11, 70, 73
PscI	ACATGT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	3 cut(s)	10, 69, 72
Sau3AI	GATC	1 cut(s)	48
SetI	ASST	3 cut(s)	33, 38, 372
SfaNI	GCATC	2 cut(s)	178, 368
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	180, 265, 310, 411, 433
SsiI	CCGC	7 cut(s)	7, 12, 69, 193, 242, 252, 523
SspMI	CTAG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	3 cut(s)	19, 276, 507
TasI	AATT	5 cut(s)	180, 265, 310, 411, 433
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	9, 71
TspDTI	ATGAA	4 cut(s)	146, 222, 222, 389
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	2 cut(s)	101, 466
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.