Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

6595627 .. 6596897

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCAGAAGCAAGGAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTATTGGTAGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGTTGGTGATTTGCAGCAGATCACTGGTTTAGCCAAACAGATGGTAACCACATTTGGAATGTCCGACATTGGCCCATGGTCATTGATGGATTCAGCTCAGAGTGGTGATGTCATAATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGATCGGGTTGCTGCTGCGGCCCCTACTCCAGTCGCTGAGTGTAAGTCATACTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

115

Amino Acids

12.35

Weight (kDa)

5.04

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	6 - 96	1.4e-26	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	306
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	2 cut(s)	224, 280
AluI	AGCT	2 cut(s)	224, 280
AlwI	GGATC	1 cut(s)	14
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	199, 306
ApeKI	GCWGC	5 cut(s)	40, 83, 142, 299, 302
AspS9I	GGNCC	2 cut(s)	200, 307
AsuHPI	GGTGA	4 cut(s)	116, 127, 146, 245
BbvI	GCAGC	5 cut(s)	52, 95, 154, 286, 289
BccI	CCATC	3 cut(s)	163, 208, 247
BisI	GCNGC	6 cut(s)	41, 84, 143, 300, 303, 306
BlsI	GCNGC	6 cut(s)	42, 85, 144, 301, 304, 307
BmgT120I	GGNCC	2 cut(s)	200, 307
BmiI	GGNNCC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	157, 317
BseDI	CCNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	239, 315
BseNI	ACTGG	2 cut(s)	157, 317
BseXI	GCAGC	5 cut(s)	52, 95, 154, 286, 289
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	201, 308
BsnI	GGCC	2 cut(s)	201, 308
Bsp143I	GATC	5 cut(s)	19, 30, 96, 147, 289
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	2 cut(s)	201, 308
BspCNI	CTCAG	2 cut(s)	238, 316
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	157, 317
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	5 cut(s)	19, 30, 96, 147, 289
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	225, 324
BstDSI	CCRYGG	1 cut(s)	203
BstEII	GGTNACC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	22, 33, 99, 150, 292
BstMBI	GATC	5 cut(s)	19, 30, 96, 147, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	172
BstV1I	GCAGC	5 cut(s)	52, 95, 154, 286, 289
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	201, 308
BtgI	CCRYGG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	200, 307
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	7 cut(s)	70, 109, 161, 201, 224, 280, 308
CviKI_1	RGCY	7 cut(s)	70, 109, 161, 201, 224, 280, 308
DdeI	CTNAG	2 cut(s)	225, 324
DpnI	GATC	5 cut(s)	21, 32, 98, 149, 291
DpnII	GATC	5 cut(s)	19, 30, 96, 147, 289
Eco130I	CCWWGG	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	207
FaiI	YATR	3 cut(s)	205, 242, 337
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	6 cut(s)	41, 84, 143, 300, 303, 306
Fsp4HI	GCNGC	6 cut(s)	41, 84, 143, 300, 303, 306
GluI	GCNGC	6 cut(s)	41, 84, 143, 300, 303, 306
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	201, 308
Hin1II	CATG	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	4 cut(s)	116, 127, 146, 245
Hpy188I	TCNGA	3 cut(s)	193, 228, 274
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	4, 53, 128, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	225, 324
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	5 cut(s)	19, 30, 96, 147, 289
LpnPI	CCDG	4 cut(s)	108, 123, 138, 330
Lsp1109I	GCAGC	5 cut(s)	52, 95, 154, 286, 289
MaeIII	GTNAC	2 cut(s)	115, 172
MalI	GATC	5 cut(s)	21, 32, 98, 149, 291
MboI	GATC	5 cut(s)	19, 30, 96, 147, 289
MboII	GAAGA	1 cut(s)	299
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	82, 106
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	5 cut(s)	19, 30, 96, 147, 289
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	6 cut(s)	42, 85, 144, 301, 304, 307
PspEI	GGTNACC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	200, 307
PstNI	CAGNNNCTG	1 cut(s)	323
SatI	GCNGC	6 cut(s)	41, 84, 143, 300, 303, 306
Sau3AI	GATC	5 cut(s)	19, 30, 96, 147, 289
Sau96I	GGNCC	2 cut(s)	200, 307
SetI	ASST	5 cut(s)	29, 117, 127, 226, 282
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	341
TasI	AATT	1 cut(s)	57
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	5 cut(s)	40, 83, 142, 299, 302
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.