Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

45599234 .. 45601070

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGCATGACCAAACGTTTCACAGTTTACCAAAAGAGCAGCACAGAGACAGAAAGAGCAAAAGTCTGGTAGCATACCATGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCCAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGGTGGGAGTCATGTCGCTGCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

109

Amino Acids

11.72

Weight (kDa)

8.0

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	17 - 104	7.6e-34	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	40, 217, 260, 320
AsuHPI	GGTGA	2 cut(s)	293, 304
BaeGI	GKGCMC	2 cut(s)	93, 123
BauI	CACGAG	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	52, 229, 272, 307
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	4 cut(s)	41, 218, 261, 321
BlsI	GCNGC	4 cut(s)	42, 219, 262, 322
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	2 cut(s)	93, 123
BseXI	GCAGC	4 cut(s)	52, 229, 272, 307
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	93, 123
Bsp143I	GATC	3 cut(s)	196, 207, 273
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	196, 207, 273
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	199, 210, 276
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	196, 207, 273
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	93, 123
BstV1I	GCAGC	4 cut(s)	52, 229, 272, 307
BstXI	CCANNNNNNTGG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	93
CviAII	CATG	4 cut(s)	8, 80, 177, 314
CviJI	RGCY	2 cut(s)	247, 286
CviKI_1	RGCY	2 cut(s)	247, 286
DpnI	GATC	3 cut(s)	198, 209, 275
DpnII	GATC	3 cut(s)	196, 207, 273
Eco72I	CACGTG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	115
FaeI	CATG	4 cut(s)	11, 83, 180, 317
FaiI	YATR	5 cut(s)	9, 76, 81, 178, 315
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	4 cut(s)	7, 79, 176, 313
Fnu4HI	GCNGC	4 cut(s)	41, 218, 261, 321
Fsp4HI	GCNGC	4 cut(s)	41, 218, 261, 321
GluI	GCNGC	4 cut(s)	41, 218, 261, 321
GsuI	CTGGAG	1 cut(s)	99
Hin1II	CATG	4 cut(s)	11, 83, 180, 317
HinfI	GANTC	2 cut(s)	112, 310
HphI	GGTGA	2 cut(s)	293, 304
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	2 cut(s)	17, 166
HpyCH4V	TGCA	2 cut(s)	191, 230
HpySE526I	ACGT	2 cut(s)	17, 166
Hsp92II	CATG	4 cut(s)	11, 83, 180, 317
Kzo9I	GATC	3 cut(s)	196, 207, 273
LpnPI	CCDG	7 cut(s)	53, 102, 129, 159, 201, 285, 300
Lsp1109I	GCAGC	4 cut(s)	52, 229, 272, 307
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	2 cut(s)	17, 166
MaeIII	GTNAC	2 cut(s)	139, 292
MalI	GATC	3 cut(s)	198, 209, 275
MboI	GATC	3 cut(s)	196, 207, 273
MhlI	GDGCHC	2 cut(s)	93, 123
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	106, 319
MnlI	CCTC	3 cut(s)	149, 259, 283
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	196, 207, 273
NlaIII	CATG	4 cut(s)	11, 83, 180, 317
NmuCI	GTSAC	2 cut(s)	139, 292
PkrI	GCNGC	4 cut(s)	42, 219, 262, 322
PleI	GAGTC	2 cut(s)	106, 318
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	2 cut(s)	106, 318
Ppu21I	YACGTR	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	193
SatI	GCNGC	4 cut(s)	41, 218, 261, 321
Sau3AI	GATC	3 cut(s)	196, 207, 273
SchI	GAGTC	2 cut(s)	106, 319
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	93, 123
SetI	ASST	6 cut(s)	20, 160, 169, 206, 294, 304
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	2 cut(s)	20, 169
TasI	AATT	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	139, 292
TseI	GCWGC	4 cut(s)	40, 217, 260, 320
Tsp45I	GTSAC	2 cut(s)	139, 292
TspDTI	ATGAA	3 cut(s)	17, 96, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.