Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

24980598 .. 24982052

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

CAATGTCTCTATCTCCTCAACCTCTGCTTCACATTCAAACAACTCTCTCAGGTTCATGCCCAAATCCAAGTATCTGGCTTTCAAAGAGACCACTTTCTCCTAACCCAACTCATTCGCTTCTGCGCTTTGTCTCCCTCCAAAAACTTCAACTACGCTCGAACCCTTCTCGACCACTCTGAGTCTTCACCACCTTCTTCGTGGAACTTCCTCATCAGAGGCTATGCCTCGAGCGACACGCCCAGAGAGGCCATCTGGGCCTTTCGTGCAATGCTCGGCCGGGGTATTAGACCCAACCAACTTACCTTTCCTTTTCTGATCAAGTCTTGCGCTTCGGCCGCCGCCCTTAAAGAAGGGAGGCAAGTACATGTAGGCGTTGTGAAGTGCGGTTTGGACTGTGACGTGTATGTTCAGAACAACTTGGTTCATTTTTATGGGGCTTGTAAGAAGATTAAGGATGCACAGCGTGTGTTCGATGGAATGTCGGTGAGAACTGTTGTTTCGTGGAATGCGGTTCTAACTGCTTGCGTTGAGAATTTCTGGTTAGATGAGGGGATTGGGTATTTTGTAAAGATGAGGGATTGTGGGTTTGAGCCGGATGAGACTACAATGGTGGTCATGTTGAACGCCTCCTCGGAGCTTGGGAACTTGAGCTTAGGGAAATGGGTTCACTCCCAAGTAATTGAAAAGGGTTTGATTTTGAATTGTCAATTGGGTACTGCACTTGTTGACATGTATGCAAAATCTGGGGCTTTGGTTTATGCCAGGCTAGTTTTTGATAGAATGGAGTTGCGGAATGTGTGGACATGGAGTGCAATGATTCTAGGACTAGCCCAGCATGGGTTTGCCAAGGAAGCCCTTGAACTTTTCCCAAAGATGTTGAACTTCTCAGTACGCCCGAATTATGTCACTTTTCTTGGCGTTCTCTGTGCTTGTAGCCATGCTGGACAGGTGGATGATGGGTACCAATACTTTCACGATATGGAACATGTGCATGGGATTAAACCCATGATGATACACTATGGTGCCATGGTTGATATCTTAGGTCGTGCTGGCCGTCTGAACGAGGCTTATAGCTTCATCATGAGCATGCCCTTTGACCCCGACCCCATTGTATGGAGAACATTGCTTAGTGCATGCAATACGCGTGATGCTAATGACGATGAAGGGGTAGGAAATAAAGTAAGTGAGAAGTTGCTTGAATTGGAGCCAAGCAGGGGAGGGAATCTTGTGATGGTCGCAAACATGTATGCTGAAGTTGGGATGTGGGAGAAAGCGGCCAATTTGAGGAAGGTTATGAAAGAAAGACGGGTGAAGAAGACGGCAGGGGAGAGTTGCGTTGAGTTAGGCGGGTCCATCCATAAATTCTTTTCTGGCTATGATTCTCGAGCTGATTATGAGGGTATCTACCAGTTACTAGATGTATTGAGCTTGCACATGGAGTTGGTTAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

485

Amino Acids

54.44

Weight (kDa)

6.97

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	960
AccB1I	GGYRCC	2 cut(s)	960, 1022
AccB7I	CCANNNNNTGG	1 cut(s)	1113
AccII	CGCG	1 cut(s)	1144
AciI	CCGC	7 cut(s)	336, 339, 384, 509, 790, 1274, 1347
AcoI	YGGCCR	4 cut(s)	274, 333, 1051, 1275
AcsI	RAATTY	2 cut(s)	532, 1361
AcuI	CTGAAG	1 cut(s)	1272
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	4 cut(s)	363, 715, 891, 962
AfiI	CCNNNNNNNGG	4 cut(s)	837, 1113, 1214, 1284
AflIII	ACRYGT	7 cut(s)	364, 399, 729, 985, 1142, 1242, 1449
AgsI	TTSAA	9 cut(s)	37, 83, 148, 622, 683, 700, 860, 880, 1199
AjiI	CACGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	761
AjuI	GAANNNNNNNTTGG	6 cut(s)	288, 320, 371, 403, 692, 724
AleI	CACNNNNGTG	1 cut(s)	1020
AluBI	AGCT	5 cut(s)	637, 651, 1074, 1388, 1428
AluI	AGCT	5 cut(s)	637, 651, 1074, 1388, 1428
Alw26I	GTCTC	4 cut(s)	11, 81, 135, 593
Ama87I	CYCGRG	2 cut(s)	226, 1383
AoxI	GGCC	6 cut(s)	246, 255, 274, 333, 1051, 1275
ApoI	RAATTY	2 cut(s)	532, 1361
Asp718I	GGTACC	1 cut(s)	960
AspLEI	GCGC	2 cut(s)	125, 329
AspS9I	GGNCC	2 cut(s)	255, 1350
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	177, 496, 1321
AvaI	CYCGRG	2 cut(s)	226, 1383
AvaII	GGWCC	1 cut(s)	1350
BanI	GGYRCC	2 cut(s)	960, 1022
BbsI	GAAGAC	2 cut(s)	174, 1322
BccI	CCATC	5 cut(s)	257, 467, 950, 1225, 1361
BceAI	ACGGC	2 cut(s)	1038, 1335
BciT130I	CCWGG	1 cut(s)	763
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	4 cut(s)	11, 81, 135, 593
BfaI	CTAG	4 cut(s)	767, 821, 827, 1415
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	3 cut(s)	336, 339, 1275
BlsI	GCNGC	3 cut(s)	337, 340, 1276
Bme1390I	CCNGG	2 cut(s)	278, 763
Bme18I	GGWCC	1 cut(s)	1350
BmeT110I	CYCGRG	2 cut(s)	226, 1383
BmgBI	CACGTC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	255, 1350
BmiI	GGNNCC	4 cut(s)	962, 1024, 1206, 1351
BmrFI	CCNGG	2 cut(s)	278, 763
BmsI	GCATC	2 cut(s)	445, 1138
BpiI	GAAGAC	2 cut(s)	174, 1322
Bpu10I	CCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	277, 630, 846, 1026
Bsc4I	CCNNNNNNNGG	4 cut(s)	837, 1113, 1214, 1284
Bse1I	ACTGG	1 cut(s)	1408
Bse3DI	GCAATG	3 cut(s)	273, 819, 1121
BseBI	CCWGG	1 cut(s)	763
BseDI	CCNNGG	4 cut(s)	277, 630, 846, 1026
BseGI	GGATG	5 cut(s)	460, 601, 958, 1266, 1353
BseLI	CCNNNNNNNGG	4 cut(s)	837, 1113, 1214, 1284
BseMI	GCAATG	3 cut(s)	273, 819, 1121
BseMII	CTCAG	3 cut(s)	62, 168, 900
BseNI	ACTGG	1 cut(s)	1408
BseRI	GAGGAG	2 cut(s)	5, 619
BseX3I	CGGCCG	2 cut(s)	274, 333
BseYI	CCCAGC	1 cut(s)	831
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	1 cut(s)	1144
Bsh1285I	CGRYCG	2 cut(s)	277, 336
BshFI	GGCC	6 cut(s)	248, 257, 276, 335, 1053, 1277
BshNI	GGYRCC	2 cut(s)	960, 1022
BsiEI	CGRYCG	2 cut(s)	277, 336
BsiHKCI	CYCGRG	2 cut(s)	226, 1383
BsiSI	CCGG	2 cut(s)	277, 593
BslI	CCNNNNNNNGG	4 cut(s)	837, 1113, 1214, 1284
BsmAI	GTCTC	4 cut(s)	11, 81, 135, 593
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	6 cut(s)	248, 257, 276, 335, 1053, 1277
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	2 cut(s)	226, 1383
Bsp143I	GATC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	1026
BspACI	CCGC	7 cut(s)	336, 339, 384, 509, 790, 1274, 1347
BspANI	GGCC	6 cut(s)	248, 257, 276, 335, 1053, 1277
BspCNI	CTCAG	3 cut(s)	61, 169, 899
BspFNI	CGCG	1 cut(s)	1144
BspHI	TCATGA	1 cut(s)	1080
BspLI	GGNNCC	4 cut(s)	962, 1024, 1206, 1351
BspT107I	GGYRCC	2 cut(s)	960, 1022
BspTNI	GGTCTC	1 cut(s)	81
BsrDI	GCAATG	3 cut(s)	273, 819, 1121
BsrI	ACTGG	1 cut(s)	1408
BssECI	CCNNGG	4 cut(s)	277, 630, 846, 1026
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	846, 1026
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	2 cut(s)	395, 493
BstC8I	GCNNGC	5 cut(s)	523, 1051, 1088, 1135, 1430
BstDEI	CTNAG	6 cut(s)	48, 177, 652, 886, 1039, 1127
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	5 cut(s)	460, 601, 958, 1266, 1353
BstFNI	CGCG	1 cut(s)	1144
BstHHI	GCGC	2 cut(s)	125, 329
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	4 cut(s)	11, 81, 135, 593
BstMBI	GATC	1 cut(s)	315
BstMCI	CGRYCG	2 cut(s)	277, 336
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 263, 335, 851
BstNI	CCWGG	1 cut(s)	763
BstNSI	RCATGY	7 cut(s)	368, 733, 989, 1090, 1137, 1246, 1453
BstSCI	CCNGG	2 cut(s)	276, 761
BstUI	CGCG	1 cut(s)	1144
BstV2I	GAAGAC	2 cut(s)	174, 1322
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstZI	CGGCCG	2 cut(s)	274, 333
BsuRI	GGCC	6 cut(s)	248, 257, 276, 335, 1053, 1277
BtgI	CCRYGG	1 cut(s)	1026
BtrI	CACGTC	1 cut(s)	400
BtsCI	GGATG	5 cut(s)	460, 601, 958, 1266, 1353
Cac8I	GCNNGC	5 cut(s)	523, 1051, 1088, 1135, 1430
CciI	TCATGA	1 cut(s)	1080
CfoI	GCGC	2 cut(s)	125, 329
Cfr13I	GGNCC	2 cut(s)	255, 1350
Csp6I	GTAC	4 cut(s)	362, 714, 890, 961
CviQI	GTAC	4 cut(s)	362, 714, 890, 961
DdeI	CTNAG	6 cut(s)	48, 177, 652, 886, 1039, 1127
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	4 cut(s)	274, 333, 1051, 1275
EagI	CGGCCG	2 cut(s)	274, 333
EclXI	CGGCCG	2 cut(s)	274, 333
Eco130I	CCWWGG	2 cut(s)	846, 1026
Eco31I	GGTCTC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	1350
Eco52I	CGGCCG	2 cut(s)	274, 333
Eco57I	CTGAAG	1 cut(s)	1272
Eco88I	CYCGRG	2 cut(s)	226, 1383
EcoRII	CCWGG	1 cut(s)	761
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	2 cut(s)	846, 1026
ErhI	CCWWGG	2 cut(s)	846, 1026
FauI	CCCGC	1 cut(s)	1340
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	3 cut(s)	336, 339, 1275
FokI	GGATG	5 cut(s)	467, 608, 965, 1273, 1340
Fsp4HI	GCNGC	3 cut(s)	336, 339, 1275
FspBI	CTAG	4 cut(s)	767, 821, 827, 1415
GlaI	GCGC	2 cut(s)	124, 328
GluI	GCNGC	3 cut(s)	336, 339, 1275
GsaI	CCCAGC	1 cut(s)	835
HaeIII	GGCC	6 cut(s)	248, 257, 276, 335, 1053, 1277
HapII	CCGG	2 cut(s)	277, 593
HhaI	GCGC	2 cut(s)	125, 329
Hin6I	GCGC	2 cut(s)	123, 327
HinP1I	GCGC	2 cut(s)	123, 327
HincII	GTYRAC	2 cut(s)	727, 1447
HindII	GTYRAC	2 cut(s)	727, 1447
HinfI	GANTC	4 cut(s)	179, 817, 1222, 1379
HpaI	GTTAAC	1 cut(s)	1447
HpaII	CCGG	2 cut(s)	277, 593
HphI	GGTGA	3 cut(s)	177, 496, 1321
Hpy166II	GTNNAC	4 cut(s)	667, 727, 801, 1447
Hpy188I	TCNGA	6 cut(s)	178, 215, 315, 411, 634, 1059
Hpy188III	TCNNGA	4 cut(s)	167, 974, 1081, 1383
Hpy8I	GTNNAC	4 cut(s)	667, 727, 801, 1447
HpyAV	CCTTC	5 cut(s)	173, 201, 344, 1157, 1282
HpyCH4III	ACNGT	2 cut(s)	395, 493
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	9 cut(s)	266, 458, 719, 737, 812, 991, 1133, 1137, 1432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 263, 335, 851
HpyF3I	CTNAG	6 cut(s)	48, 177, 652, 886, 1039, 1127
HpySE526I	ACGT	1 cut(s)	399
HspAI	GCGC	2 cut(s)	123, 327
KpnI	GGTACC	1 cut(s)	964
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	1447
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	634, 1204
LweI	GCATC	2 cut(s)	445, 1138
MaeI	CTAG	4 cut(s)	767, 821, 827, 1415
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	395, 904, 1410
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	5 cut(s)	174, 186, 457, 1324, 1327
MfeI	CAATTG	1 cut(s)	707
MluCI	AATT	8 cut(s)	532, 678, 700, 707, 898, 1199, 1279, 1361
MluI	ACGCGT	1 cut(s)	1142
MlyI	GAGTC	1 cut(s)	188
MseI	TTAA	4 cut(s)	345, 450, 999, 1446
MslI	CAYNNNNRTG	4 cut(s)	429, 990, 1020, 1085
MspI	CCGG	2 cut(s)	277, 593
MspR9I	CCNGG	2 cut(s)	278, 763
MunI	CAATTG	1 cut(s)	707
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	763
MvnI	CGCG	1 cut(s)	1144
MwoI	GCNNNNNNNGC	4 cut(s)	254, 263, 335, 851
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	1026
NdeII	GATC	1 cut(s)	315
NlaIV	GGNNCC	4 cut(s)	962, 1024, 1206, 1351
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	395, 904
NspI	RCATGY	7 cut(s)	368, 733, 989, 1090, 1137, 1246, 1453
OliI	CACNNNNGTG	1 cut(s)	1020
PaeI	GCATGC	2 cut(s)	1090, 1137
PaeR7I	CTCGAG	2 cut(s)	226, 1383
PagI	TCATGA	1 cut(s)	1080
PciI	ACATGT	5 cut(s)	364, 729, 985, 1242, 1449
PcsI	WCGNNNNNNNCGW	1 cut(s)	1051
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	817, 1222, 1379
PflMI	CCANNNNNTGG	1 cut(s)	1113
PkrI	GCNGC	3 cut(s)	337, 340, 1276
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PscI	ACATGT	5 cut(s)	364, 729, 985, 1242, 1449
Psp6I	CCWGG	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	761
PspN4I	GGNNCC	4 cut(s)	962, 1024, 1206, 1351
PspPI	GGNCC	2 cut(s)	255, 1350
PspXI	VCTCGAGB	1 cut(s)	226
RsaI	GTAC	4 cut(s)	363, 715, 891, 962
RsaNI	GTAC	4 cut(s)	362, 714, 890, 961
RseI	CAYNNNNRTG	4 cut(s)	429, 990, 1020, 1085
SaqAI	TTAA	4 cut(s)	345, 450, 999, 1446
SatI	GCNGC	3 cut(s)	336, 339, 1275
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	255, 1350
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	278, 763
SfaNI	GCATC	2 cut(s)	445, 1138
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
Sfr274I	CTCGAG	2 cut(s)	226, 1383
SinI	GGWCC	1 cut(s)	1350
SlaI	CTCGAG	2 cut(s)	226, 1383
SmiMI	CAYNNNNRTG	4 cut(s)	429, 990, 1020, 1085
SmlI	CTYRAG	3 cut(s)	226, 646, 1383
SmoI	CTYRAG	3 cut(s)	226, 646, 1383
SphI	GCATGC	2 cut(s)	1090, 1137
Sse9I	AATT	8 cut(s)	532, 678, 700, 707, 898, 1199, 1279, 1361
SsiI	CCGC	7 cut(s)	336, 339, 384, 509, 790, 1274, 1347
SspMI	CTAG	4 cut(s)	767, 821, 827, 1415
StyD4I	CCNGG	2 cut(s)	276, 761
StyI	CCWWGG	2 cut(s)	846, 1026
TaaI	ACNGT	2 cut(s)	395, 493
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	5 cut(s)	157, 168, 227, 471, 1384
TasI	AATT	8 cut(s)	532, 678, 700, 707, 898, 1199, 1279, 1361
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	3 cut(s)	338, 341, 1277
TfiI	GAWTC	3 cut(s)	817, 1222, 1379
Tru1I	TTAA	4 cut(s)	345, 450, 999, 1446
Tru9I	TTAA	4 cut(s)	345, 450, 999, 1446
TseFI	GTSAC	2 cut(s)	395, 904
Tsp45I	GTSAC	2 cut(s)	395, 904
TspDTI	ATGAA	5 cut(s)	44, 413, 1066, 1176, 1310
Van91I	CCANNNNNTGG	1 cut(s)	1113
VpaK11BI	GGWCC	1 cut(s)	1350
XapI	RAATTY	2 cut(s)	532, 1361
XceI	RCATGY	7 cut(s)	368, 733, 989, 1090, 1137, 1246, 1453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XhoI	CTCGAG	2 cut(s)	226, 1383
XspI	CTAG	4 cut(s)	767, 821, 827, 1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.