Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039228.1

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

1848 .. 2204

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039228.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggatcaaagatgctcagattcatcttcagatgctgcgaatggatcaaagatgctcagattcatcttcagatgctgcgaatggatcaaagatgctcagattcatcttcagattcatcttccacgaggtcaagcacgtggtcttacatggttcattcctgcagatgatcctaccttgatctccaagcggcaactatttgcaagaattgttggtgggcttggtggtagagcagcagaggaagtgatctttggtgagccagaggtgacaacaggagcagctggtgatttgcagcagatcactggtttagccaaacaggtaaccaatatccgccatgactatctgcacataggaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

6.89

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	187, 328
AclWI	GGATC	4 cut(s)	12, 52, 92, 161
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	3 cut(s)	12, 52, 92
AcvI	CACGTG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	4 cut(s)	12, 52, 92, 161
AlwNI	CAGNNNCTG	2 cut(s)	35, 75
ApeKI	GCWGC	5 cut(s)	35, 75, 230, 275, 289
ApoI	RAATTY	1 cut(s)	351
AsuHPI	GGTGA	3 cut(s)	263, 274, 293
BauI	CACGAG	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	137
BbvI	GCAGC	5 cut(s)	22, 62, 242, 287, 301
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	6 cut(s)	36, 76, 188, 231, 276, 290
BlsI	GCNGC	6 cut(s)	37, 77, 189, 232, 277, 291
BmsI	GCATC	5 cut(s)	2, 22, 42, 62, 82
BsaAI	YACGTR	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	304
BseMII	CTCAG	3 cut(s)	30, 70, 110
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	5 cut(s)	22, 62, 242, 287, 301
BsgI	GTGCAG	1 cut(s)	326
Bsp143I	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
BspACI	CCGC	2 cut(s)	187, 328
BspCNI	CTCAG	3 cut(s)	29, 69, 109
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	4 cut(s)	12, 52, 92, 161
BsrI	ACTGG	1 cut(s)	304
BssMI	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
BssSI	CACGAG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	16, 56, 96
BstEII	GGTNACC	1 cut(s)	316
BstKTI	GATC	7 cut(s)	7, 47, 87, 169, 180, 246, 297
BstMBI	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
BstPI	GGTNACC	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	5 cut(s)	22, 62, 242, 287, 301
BtsIMutI	CAGTG	1 cut(s)	297
CaiI	CAGNNNCTG	2 cut(s)	35, 75
CviAII	CATG	2 cut(s)	147, 332
CviJI	RGCY	4 cut(s)	217, 256, 278, 308
CviKI_1	RGCY	4 cut(s)	217, 256, 278, 308
DdeI	CTNAG	3 cut(s)	16, 56, 96
DpnI	GATC	7 cut(s)	6, 46, 86, 168, 179, 245, 296
DpnII	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
EciI	GGCGGA	1 cut(s)	317
Eco57I	CTGAAG	3 cut(s)	12, 52, 92
Eco72I	CACGTG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	316
FaeI	CATG	2 cut(s)	150, 335
FaiI	YATR	3 cut(s)	148, 333, 347
FatI	CATG	2 cut(s)	146, 331
Fnu4HI	GCNGC	6 cut(s)	36, 76, 188, 231, 276, 290
Fsp4HI	GCNGC	6 cut(s)	36, 76, 188, 231, 276, 290
GluI	GCNGC	6 cut(s)	36, 76, 188, 231, 276, 290
Hin1II	CATG	2 cut(s)	150, 335
HinfI	GANTC	4 cut(s)	20, 60, 100, 112
HphI	GGTGA	3 cut(s)	263, 274, 293
Hpy188I	TCNGA	6 cut(s)	19, 31, 59, 71, 99, 111
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	161, 200, 289, 343
HpyF3I	CTNAG	3 cut(s)	16, 56, 96
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	150, 335
Kzo9I	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	6 cut(s)	171, 255, 264, 270, 285, 299
Lsp1109I	GCAGC	5 cut(s)	22, 62, 242, 287, 301
LweI	GCATC	5 cut(s)	2, 22, 42, 62, 82
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	2 cut(s)	262, 316
MalI	GATC	7 cut(s)	6, 46, 86, 168, 179, 245, 296
MboI	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
MboII	GAAGA	4 cut(s)	18, 58, 98, 110
MluCI	AATT	2 cut(s)	204, 351
MnlI	CCTC	3 cut(s)	119, 229, 253
MseI	TTAA	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	278
NdeII	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
NlaIII	CATG	2 cut(s)	150, 335
NmuCI	GTSAC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	20, 60, 100, 112
PkrI	GCNGC	6 cut(s)	37, 77, 189, 232, 277, 291
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
PspCI	CACGTG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	35, 75
PvuII	CAGCTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	355
SatI	GCNGC	6 cut(s)	36, 76, 188, 231, 276, 290
Sau3AI	GATC	7 cut(s)	4, 44, 84, 166, 177, 243, 294
SetI	ASST	6 cut(s)	130, 139, 176, 264, 280, 318
SfaNI	GCATC	5 cut(s)	2, 22, 42, 62, 82
SfcI	CTRYAG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	204, 351
SsiI	CCGC	2 cut(s)	187, 328
TaiI	ACGT	1 cut(s)	139
TasI	AATT	2 cut(s)	204, 351
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	4 cut(s)	20, 60, 100, 112
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	5 cut(s)	35, 75, 230, 275, 289
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	12, 52, 92, 104, 142
TspRI	CASTG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.