Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

11725519 .. 11728415

Gene Structure 2897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGCAGATATTCTTGACTCTGCCTTGTTGAGGCCTGGCCGGTTTGATAGGCAGGTGTCTGTTGATGTTCCAGACGTACGTGGCAGAACAGATATCTTGAAGGTTCATGCTAGCAATAAAAAGTTTGAGGGAAATGTTTCCCTTGATGTAGTTGCTATGAGGACACCTGGTTTTAGTGGAGCAGATCTTGCCAACCTCCTAAATGAGGCAGCTATATTGGCTGGTCGGCGTGGGAAGTCAGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGAATAGTGGCTGGAATGGAAGGAACCGTAATGACATACGGAAAGAGCAAAAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGCTGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGTTCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCTGATCACTGGTTTAGCCAAACAGAAACGATGTCTAATAATATTTTACACATCGGTTCCTGAAGAAGAACGATGTCCAATACTATGTTGGACATCGGTTCCTTGGTCTATATTGATGTCCATATTTATGTTAGACATCGGTTTTTATTTAGTAACTGATGTATTTTCGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

270

Amino Acids

29.01

Weight (kDa)

5.85

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	1 - 39	2e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	62 - 105	4.5e-13	AAA+ lid domain
Peptidase_M41	PF01434	123 - 220	1.7e-37	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	717
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
AgsI	TTSAA	2 cut(s)	151, 321
AjnI	CCWGG	3 cut(s)	85, 217, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	3 cut(s)	263, 623, 637
AluI	AGCT	3 cut(s)	263, 623, 637
AoxI	GGCC	2 cut(s)	83, 88
ApeKI	GCWGC	6 cut(s)	41, 260, 532, 575, 620, 634
Asp700I	GAANNNNTTC	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	608, 619, 638
AsuNHI	GCTAGC	1 cut(s)	161
BaeGI	GKGCMC	2 cut(s)	408, 438
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BauI	CACGAG	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	482
BbvI	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 646
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	87, 219, 432
BclI	TGATCA	1 cut(s)	639
BfaI	CTAG	2 cut(s)	162, 461
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 635
BlsI	GCNGC	6 cut(s)	43, 262, 534, 577, 622, 636
Bme1390I	CCNGG	3 cut(s)	87, 219, 432
BmiI	GGNNCC	3 cut(s)	352, 693, 735
BmrFI	CCNGG	3 cut(s)	87, 219, 432
BmsI	GCATC	1 cut(s)	430
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	414
BsaAI	YACGTR	2 cut(s)	131, 482
BsaJI	CCNNGG	2 cut(s)	431, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 256, 417
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	28, 649
BseBI	CCWGG	3 cut(s)	87, 219, 432
BseDI	CCNNGG	2 cut(s)	431, 737
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
BseNI	ACTGG	2 cut(s)	28, 649
BseSI	GKGCMC	2 cut(s)	408, 438
BseXI	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 646
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	2 cut(s)	85, 90
BsiSI	CCGG	1 cut(s)	91
BsiWI	CGTACG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	85, 90
Bsp1286I	GDGCHC	2 cut(s)	408, 438
Bsp143I	GATC	4 cut(s)	235, 522, 588, 639
BspANI	GGCC	2 cut(s)	85, 90
BspLI	GGNNCC	3 cut(s)	352, 693, 735
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	28, 649
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	431, 737
BssMI	GATC	4 cut(s)	235, 522, 588, 639
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	87, 219, 432
Bst4CI	ACNGT	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	131, 482
BstC8I	GCNNGC	2 cut(s)	163, 408
BstENI	CCTNNNNNAGG	2 cut(s)	79, 254
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	238, 525, 591, 642
BstMBI	GATC	4 cut(s)	235, 522, 588, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 269
BstNI	CCWGG	3 cut(s)	87, 219, 432
BstSCI	CCNGG	3 cut(s)	85, 217, 430
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	2 cut(s)	408, 438
BstV1I	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 646
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	85, 90
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	21, 642
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	163, 408
Cfr10I	RCCGGY	1 cut(s)	90
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	158, 492
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	4 cut(s)	237, 524, 590, 641
DpnII	GATC	4 cut(s)	235, 522, 588, 639
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	737
Eco147I	AGGCCT	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	717
Eco72I	CACGTG	1 cut(s)	482
EcoNI	CCTNNNNNAGG	2 cut(s)	79, 254
EcoRII	CCWGG	3 cut(s)	85, 217, 430
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	2 cut(s)	161, 495
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	157, 491
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 635
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 635
FspBI	CTAG	2 cut(s)	162, 461
GluI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 635
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	85, 90
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	2 cut(s)	161, 495
HinfI	GANTC	3 cut(s)	68, 317, 427
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	3 cut(s)	608, 619, 638
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	5 cut(s)	65, 122, 148, 695, 810
HpyAV	CCTTC	2 cut(s)	145, 341
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	126, 130, 481
HpyCH4V	TGCA	5 cut(s)	41, 506, 545, 620, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 269
HpySE526I	ACGT	3 cut(s)	126, 130, 481
Hsp92II	CATG	2 cut(s)	161, 495
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	235, 522, 588, 639
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 646
LweI	GCATC	1 cut(s)	430
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	2 cut(s)	162, 461
MaeII	ACGT	3 cut(s)	126, 130, 481
MaeIII	GTNAC	4 cut(s)	17, 454, 607, 787
MalI	GATC	4 cut(s)	237, 524, 590, 641
MboI	GATC	4 cut(s)	235, 522, 588, 639
MboII	GAAGA	2 cut(s)	710, 713
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	408, 438
MluCI	AATT	3 cut(s)	294, 321, 549
MlyI	GAGTC	2 cut(s)	62, 421
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	9 cut(s)	7, 75, 172, 204, 250, 257, 464, 574, 598
MroXI	GAANNNNTTC	1 cut(s)	187
MslI	CAYNNNNRTG	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	623, 637
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	3 cut(s)	87, 219, 432
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	3 cut(s)	87, 219, 432
MwoI	GCNNNNNNNGC	2 cut(s)	239, 269
NdeII	GATC	4 cut(s)	235, 522, 588, 639
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	161, 495
NlaIV	GGNNCC	3 cut(s)	352, 693, 735
NmuCI	GTSAC	2 cut(s)	454, 607
PaqCI	CACCTGC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	317
Pfl23II	CGTACG	1 cut(s)	127
PkrI	GCNGC	6 cut(s)	43, 262, 534, 577, 622, 636
PleI	GAGTC	2 cut(s)	62, 421
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	62, 421
Ppu21I	YACGTR	2 cut(s)	131, 482
Psp6I	CCWGG	3 cut(s)	85, 217, 430
PspCI	CACGTG	1 cut(s)	482
PspGI	CCWGG	3 cut(s)	85, 217, 430
PspLI	CGTACG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	352, 693, 735
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	623, 637
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	761
SatI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 635
Sau3AI	GATC	4 cut(s)	235, 522, 588, 639
SchI	GAGTC	2 cut(s)	62, 421
ScrFI	CCNGG	3 cut(s)	87, 219, 432
SduI	GDGCHC	2 cut(s)	408, 438
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	3 cut(s)	294, 321, 549
SseBI	AGGCCT	1 cut(s)	85
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	2 cut(s)	162, 461
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	3 cut(s)	85, 217, 430
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	129, 133, 484
TasI	AATT	3 cut(s)	294, 321, 549
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	2 cut(s)	28, 649
TseFI	GTSAC	2 cut(s)	454, 607
TseI	GCWGC	6 cut(s)	41, 260, 532, 575, 620, 634
Tsp45I	GTSAC	2 cut(s)	454, 607
TspDTI	ATGAA	3 cut(s)	146, 288, 487
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	28, 649
XagI	CCTNNNNNAGG	2 cut(s)	79, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	162, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.