Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

7372831 .. 7373681

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTGCAAATTTCTTCTCTCTTCTTGAATTACCGGAACATGGATCAAAGATGCTCAGATTCATCTTCAGATGCTGCGAATGGATCAGAGATGCTCAGATTCATCTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTATTGGTAGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGTTGGTGATTTGCAGCAGATCACTGGTTTAGCCAAACAGATGGTAACCACATTTGGAATGTCCGACATTGGCCCATGGTCATTGATGGATTCAGCTCAGAGTGGTGATGTCATAATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGATCGGGTTGCTGCTGCGGCCCCTACTCCAGTCGCTGAGTGTAAGTCATACTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

160

Amino Acids

17.65

Weight (kDa)

5.91

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	36 - 141	2.6e-34	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	3 cut(s)	52, 92, 149
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	2 cut(s)	52, 441
AcvI	CACGTG	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	29
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	2 cut(s)	359, 415
AluI	AGCT	2 cut(s)	359, 415
AlwI	GGATC	3 cut(s)	52, 92, 149
AlwNI	CAGNNNCTG	2 cut(s)	75, 458
AoxI	GGCC	2 cut(s)	334, 441
ApeKI	GCWGC	6 cut(s)	75, 175, 218, 277, 434, 437
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	335, 442
AsuHPI	GGTGA	4 cut(s)	251, 262, 281, 380
BauI	CACGAG	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	125
BbvI	GCAGC	6 cut(s)	62, 187, 230, 289, 421, 424
BccI	CCATC	3 cut(s)	298, 343, 382
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	7 cut(s)	76, 176, 219, 278, 435, 438, 441
BlsI	GCNGC	7 cut(s)	77, 177, 220, 279, 436, 439, 442
BmgT120I	GGNCC	2 cut(s)	335, 442
BmiI	GGNNCC	1 cut(s)	444
BmsI	GCATC	3 cut(s)	42, 62, 82
BpmI	CTGGAG	1 cut(s)	435
BsaAI	YACGTR	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	292, 452
BseDI	CCNNGG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	4 cut(s)	70, 110, 374, 450
BseNI	ACTGG	2 cut(s)	292, 452
BseXI	GCAGC	6 cut(s)	62, 187, 230, 289, 421, 424
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	336, 443
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	2 cut(s)	336, 443
Bsp143I	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	2 cut(s)	336, 443
BspCNI	CTCAG	4 cut(s)	69, 109, 373, 451
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	3 cut(s)	52, 92, 149
BsrI	ACTGG	2 cut(s)	292, 452
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	56, 96, 360, 459
BstDSI	CCRYGG	1 cut(s)	338
BstEII	GGTNACC	1 cut(s)	307
BstKTI	GATC	7 cut(s)	47, 87, 157, 168, 234, 285, 427
BstMBI	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	6 cut(s)	62, 187, 230, 289, 421, 424
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	336, 443
BtgI	CCRYGG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	2 cut(s)	75, 458
Cfr13I	GGNCC	2 cut(s)	335, 442
CviAII	CATG	3 cut(s)	41, 135, 339
CviJI	RGCY	7 cut(s)	205, 244, 296, 336, 359, 415, 443
CviKI_1	RGCY	7 cut(s)	205, 244, 296, 336, 359, 415, 443
DdeI	CTNAG	4 cut(s)	56, 96, 360, 459
DpnI	GATC	7 cut(s)	46, 86, 156, 167, 233, 284, 426
DpnII	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	338
Eco57I	CTGAAG	2 cut(s)	52, 441
Eco72I	CACGTG	1 cut(s)	125
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	44, 138, 342
FaiI	YATR	5 cut(s)	42, 136, 340, 377, 472
FatI	CATG	3 cut(s)	40, 134, 338
Fnu4HI	GCNGC	7 cut(s)	76, 176, 219, 278, 435, 438, 441
Fsp4HI	GCNGC	7 cut(s)	76, 176, 219, 278, 435, 438, 441
GluI	GCNGC	7 cut(s)	76, 176, 219, 278, 435, 438, 441
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	336, 443
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	44, 138, 342
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	60, 100, 353
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	4 cut(s)	251, 262, 281, 380
Hpy188I	TCNGA	7 cut(s)	59, 71, 89, 99, 328, 363, 409
Hpy188III	TCNNGA	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	5 cut(s)	8, 149, 188, 263, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	4 cut(s)	56, 96, 360, 459
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	44, 138, 342
Kzo9I	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
LpnPI	CCDG	6 cut(s)	48, 159, 243, 258, 273, 465
Lsp1109I	GCAGC	6 cut(s)	62, 187, 230, 289, 421, 424
LweI	GCATC	3 cut(s)	42, 62, 82
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	250, 307
MalI	GATC	7 cut(s)	46, 86, 156, 167, 233, 284, 426
MboI	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
MboII	GAAGA	5 cut(s)	7, 14, 58, 98, 434
MluCI	AATT	3 cut(s)	10, 29, 192
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	3 cut(s)	107, 217, 241
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
NlaIII	CATG	3 cut(s)	44, 138, 342
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	60, 100, 353
PkrI	GCNGC	7 cut(s)	77, 177, 220, 279, 436, 439, 442
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	125
PspCI	CACGTG	1 cut(s)	125
PspEI	GGTNACC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	2 cut(s)	335, 442
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	2 cut(s)	75, 458
SatI	GCNGC	7 cut(s)	76, 176, 219, 278, 435, 438, 441
Sau3AI	GATC	7 cut(s)	44, 84, 154, 165, 231, 282, 424
Sau96I	GGNCC	2 cut(s)	335, 442
SetI	ASST	7 cut(s)	118, 127, 164, 252, 262, 361, 417
SfaNI	GCATC	3 cut(s)	42, 62, 82
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	10, 29, 192
SsiI	CCGC	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	127
TasI	AATT	3 cut(s)	10, 29, 192
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	60, 100, 353
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	6 cut(s)	75, 175, 218, 277, 434, 437
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	52, 92, 130
TspRI	CASTG	1 cut(s)	292
XapI	RAATTY	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.