Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

60978915 .. 60980225

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGCAGATATTCTTGACTCTGCCTTGTTGAGGCCTGACCGGTTTGACAGGCAGGTGTCTGTTGATGTTCCAGACGTACGTGGCAGAACAGATATCTTGAAGGTTCATGCTAGCAATAAAAAGTTTGAGGGAAATGTTTCCCTTGATGTAGTTGCTATGAGGACACCTGGTTTTAGTGGAGCAGATCTTGCCAACCTCCTAAATGAGGCAGCTATATTGGCTGGTCGGCGTGGGAAGTCAGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGAATAGTGGCTGGAATGGAAGGAACCGTAATGACAGACGGAAAGAGCAAAAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTTCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGATTTGCAGCAGATCACTGGTTTAGCCAAACAGGTAACCAATATCCGCCATGACTATCTGCACATAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

233

Amino Acids

24.74

Weight (kDa)

5.86

Isoelectric Point (pI)

20.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	1 - 39	2e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	62 - 105	3.5e-13	AAA+ lid domain
Peptidase_M41	PF01434	121 - 220	1e-37	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AciI	CCGC	1 cut(s)	670
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	693
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	151, 321, 529
AjnI	CCWGG	2 cut(s)	217, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	2 cut(s)	263, 623
AluI	AGCT	2 cut(s)	263, 623
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	6 cut(s)	41, 260, 532, 575, 620, 631
ApoI	RAATTY	1 cut(s)	693
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	608, 619
AsuNHI	GCTAGC	1 cut(s)	161
BaeGI	GKGCMC	2 cut(s)	408, 438
BaeI	ACNNNNGTAYC	2 cut(s)	10, 43
BauI	CACGAG	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	482
BbvI	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 643
BccI	CCATC	1 cut(s)	419
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	2 cut(s)	219, 432
BfaI	CTAG	2 cut(s)	162, 461
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 632
BlsI	GCNGC	6 cut(s)	43, 262, 534, 577, 622, 633
Bme1390I	CCNGG	2 cut(s)	219, 432
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	219, 432
BmsI	GCATC	1 cut(s)	430
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	414
BsaAI	YACGTR	2 cut(s)	131, 482
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 256, 417
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	2 cut(s)	28, 646
BseBI	CCWGG	2 cut(s)	219, 432
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
BseNI	ACTGG	2 cut(s)	28, 646
BseSI	GKGCMC	2 cut(s)	408, 438
BseXI	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 643
BsgI	GTGCAG	2 cut(s)	639, 668
BshFI	GGCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	91
BsiWI	CGTACG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	81, 256, 417
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	408, 438
Bsp143I	GATC	5 cut(s)	235, 511, 522, 588, 636
BspACI	CCGC	1 cut(s)	670
BspANI	GGCC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	28, 646
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	235, 511, 522, 588, 636
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	219, 432
Bst4CI	ACNGT	1 cut(s)	355
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	131, 482
BstC8I	GCNNGC	2 cut(s)	163, 408
BstEII	GGTNACC	1 cut(s)	658
BstENI	CCTNNNNNAGG	2 cut(s)	79, 254
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	238, 514, 525, 591, 639
BstMBI	GATC	5 cut(s)	235, 511, 522, 588, 636
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 269
BstNI	CCWGG	2 cut(s)	219, 432
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	217, 430
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	2 cut(s)	408, 438
BstV1I	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 643
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	21, 639
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	163, 408
Cfr10I	RCCGGY	1 cut(s)	90
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	128
CspAI	ACCGGT	1 cut(s)	90
CviAII	CATG	3 cut(s)	158, 492, 674
CviJI	RGCY	8 cut(s)	85, 263, 272, 338, 562, 601, 623, 650
CviKI_1	RGCY	8 cut(s)	85, 263, 272, 338, 562, 601, 623, 650
CviQI	GTAC	1 cut(s)	128
DpnI	GATC	5 cut(s)	237, 513, 524, 590, 638
DpnII	GATC	5 cut(s)	235, 511, 522, 588, 636
EciI	GGCGGA	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	482
Eco91I	GGTNACC	1 cut(s)	658
EcoNI	CCTNNNNNAGG	2 cut(s)	79, 254
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	2 cut(s)	217, 430
EcoRV	GATATC	1 cut(s)	145
FaeI	CATG	3 cut(s)	161, 495, 677
FaiI	YATR	7 cut(s)	159, 209, 266, 391, 493, 675, 689
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	157, 491, 673
Fnu4HI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 632
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 632
FspBI	CTAG	2 cut(s)	162, 461
GluI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 632
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	3 cut(s)	161, 495, 677
HinfI	GANTC	3 cut(s)	68, 317, 427
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	2 cut(s)	608, 619
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	65, 122, 148
HpyAV	CCTTC	2 cut(s)	145, 341
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	3 cut(s)	126, 130, 481
HpyCH4V	TGCA	6 cut(s)	41, 506, 545, 620, 631, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 269
HpySE526I	ACGT	3 cut(s)	126, 130, 481
Hsp92II	CATG	3 cut(s)	161, 495, 677
Kzo9I	GATC	5 cut(s)	235, 511, 522, 588, 636
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	6 cut(s)	53, 272, 544, 587, 632, 643
LweI	GCATC	1 cut(s)	430
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	2 cut(s)	162, 461
MaeII	ACGT	3 cut(s)	126, 130, 481
MaeIII	GTNAC	4 cut(s)	17, 454, 607, 658
MalI	GATC	5 cut(s)	237, 513, 524, 590, 638
MboI	GATC	5 cut(s)	235, 511, 522, 588, 636
MboII	GAAGA	1 cut(s)	517
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	408, 438
MluCI	AATT	4 cut(s)	294, 321, 549, 693
MlyI	GAGTC	2 cut(s)	62, 421
MnlI	CCTC	9 cut(s)	7, 75, 172, 204, 250, 257, 464, 574, 598
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	697
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	2 cut(s)	219, 432
MunI	CAATTG	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	219, 432
MwoI	GCNNNNNNNGC	2 cut(s)	239, 269
NdeII	GATC	5 cut(s)	235, 511, 522, 588, 636
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	161, 495, 677
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	454, 607
PaqCI	CACCTGC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	317
Pfl23II	CGTACG	1 cut(s)	127
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	43, 262, 534, 577, 622, 633
PleI	GAGTC	2 cut(s)	62, 421
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	62, 421
Ppu21I	YACGTR	2 cut(s)	131, 482
Psp6I	CCWGG	2 cut(s)	217, 430
PspCI	CACGTG	1 cut(s)	482
PspEI	GGTNACC	1 cut(s)	658
PspGI	CCWGG	2 cut(s)	217, 430
PspLI	CGTACG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	6 cut(s)	42, 261, 533, 576, 621, 632
Sau3AI	GATC	5 cut(s)	235, 511, 522, 588, 636
SchI	GAGTC	2 cut(s)	62, 421
ScrFI	CCNGG	2 cut(s)	219, 432
SduI	GDGCHC	2 cut(s)	408, 438
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	504
Sse9I	AATT	4 cut(s)	294, 321, 549, 693
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	670
SspMI	CTAG	2 cut(s)	162, 461
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	217, 430
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	3 cut(s)	129, 133, 484
TasI	AATT	4 cut(s)	294, 321, 549, 693
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TscAI	CASTG	2 cut(s)	28, 646
TseFI	GTSAC	2 cut(s)	454, 607
TseI	GCWGC	6 cut(s)	41, 260, 532, 575, 620, 631
Tsp45I	GTSAC	2 cut(s)	454, 607
TspDTI	ATGAA	3 cut(s)	146, 288, 487
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	2 cut(s)	28, 646
XagI	CCTNNNNNAGG	2 cut(s)	79, 254
XapI	RAATTY	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	162, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.