Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000524.1

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

149664 .. 151679

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000524.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atggacggaaaatcagacccgttcgactgcacccacaaagcaccactgaggccaatgacgagaccgaggcggagaaccgccggacgagtgcaaacacggctaggatctaagatcactcgacctcctaacatgacatctctcattaccttaaacctccaagacaattcgaatggctgcgattctaaagtgcaagtcatttacctcggcgagtatgggtgctcacgcatgagttttccacccccctcattctccatcgttcttgttcttgttctacatgctggttcttggttccatctatgcagccatggttctttcttgagatgtgtctctgtgaacctgcagccactttgcatgtctgcaaatttcttctctcttcttgaattaccggaacatggatcaaagatgctcagattcatcttcagatgctgcgaatggatcaaagatgctcagattcatcttcagattcatcttccacgaggtcaagcacgtggtcttacatggttcattcctgcagatgatcctaccttgatctccaagcggcaactatttgcaagaattgttggtgggcttggtggtagagcagcagaggaagtgatctttggtgagccagaggtgacaacaggagcagctggtgatttgcagcagatcactggtttagccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

221

Amino Acids

24.51

Weight (kDa)

9.3

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AciI	CCGC	3 cut(s)	70, 78, 538
AclWI	GGATC	4 cut(s)	112, 403, 443, 512
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	403, 443
AcvI	CACGTG	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	380
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	1 cut(s)	629
AluI	AGCT	1 cut(s)	629
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	55, 331
AlwI	GGATC	4 cut(s)	112, 403, 443, 512
AlwNI	CAGNNNCTG	1 cut(s)	426
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	7 cut(s)	174, 300, 340, 426, 581, 626, 640
ApoI	RAATTY	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	614, 625, 644
AsuII	TTCGAA	1 cut(s)	167
BauI	CACGAG	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	7 cut(s)	161, 312, 352, 413, 593, 638, 652
BccI	CCATC	2 cut(s)	260, 300
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	55, 331
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	338, 510
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	8 cut(s)	175, 301, 341, 427, 539, 582, 627, 641
BlsI	GCNGC	8 cut(s)	176, 302, 342, 428, 540, 583, 628, 642
BmiI	GGNNCC	1 cut(s)	290
BmsI	GCATC	3 cut(s)	393, 413, 433
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	65, 202, 304
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	655
BseDI	CCNNGG	3 cut(s)	65, 202, 304
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	38, 421, 461
BseNI	ACTGG	1 cut(s)	655
BseXI	GCAGC	7 cut(s)	161, 312, 352, 413, 593, 638, 652
BsgI	GTGCAG	1 cut(s)	13
BshFI	GGCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	81, 386
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	55, 331
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	3 cut(s)	70, 78, 538
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	39, 420, 460
BspLI	GGNNCC	1 cut(s)	290
BspMAI	CTGCAG	2 cut(s)	342, 514
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	4 cut(s)	112, 403, 443, 512
BspT104I	TTCGAA	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	65, 202, 304
BssMI	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	167
BstDEI	CTNAG	4 cut(s)	47, 108, 407, 447
BstDSI	CCRYGG	1 cut(s)	304
BstKTI	GATC	8 cut(s)	107, 114, 398, 438, 520, 531, 597, 648
BstMAI	GTCTC	2 cut(s)	55, 331
BstMBI	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	278, 355
BstSFI	CTRYAG	2 cut(s)	338, 510
BstV1I	GCAGC	7 cut(s)	161, 312, 352, 413, 593, 638, 652
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	44, 648
BveI	ACCTGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	426
CviAII	CATG	7 cut(s)	130, 226, 275, 305, 352, 392, 498
CviJI	RGCY	9 cut(s)	52, 100, 174, 303, 343, 568, 607, 629, 659
CviKI_1	RGCY	9 cut(s)	52, 100, 174, 303, 343, 568, 607, 629, 659
DdeI	CTNAG	4 cut(s)	47, 108, 407, 447
DpnI	GATC	8 cut(s)	106, 113, 397, 437, 519, 530, 596, 647
DpnII	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	304
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	403, 443
Eco72I	CACGTG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	7 cut(s)	133, 229, 278, 308, 355, 395, 501
FaiI	YATR	9 cut(s)	131, 213, 227, 276, 298, 306, 353, 393, 499
FatI	CATG	7 cut(s)	129, 225, 274, 304, 351, 391, 497
Fnu4HI	GCNGC	8 cut(s)	175, 301, 341, 427, 539, 582, 627, 641
Fsp4HI	GCNGC	8 cut(s)	175, 301, 341, 427, 539, 582, 627, 641
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	8 cut(s)	175, 301, 341, 427, 539, 582, 627, 641
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	2 cut(s)	81, 386
Hin1II	CATG	7 cut(s)	133, 229, 278, 308, 355, 395, 501
HinfI	GANTC	4 cut(s)	179, 411, 451, 463
HpaII	CCGG	2 cut(s)	81, 386
HphI	GGTGA	3 cut(s)	614, 625, 644
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	16, 410, 422, 450, 462
Hpy188III	TCNNGA	2 cut(s)	316, 377
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	4 cut(s)	47, 108, 407, 447
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	7 cut(s)	133, 229, 278, 308, 355, 395, 501
Kzo9I	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
LmnI	GCTCC	1 cut(s)	623
LpnPI	CCDG	9 cut(s)	94, 264, 350, 399, 522, 606, 615, 621, 636
Lsp1109I	GCAGC	7 cut(s)	161, 312, 352, 413, 593, 638, 652
LweI	GCATC	3 cut(s)	393, 413, 433
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	8 cut(s)	106, 113, 397, 437, 519, 530, 596, 647
MboI	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
MboII	GAAGA	5 cut(s)	358, 365, 409, 449, 461
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	4 cut(s)	163, 361, 380, 555
MnlI	CCTC	9 cut(s)	42, 60, 132, 164, 212, 253, 470, 580, 604
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	81, 386
MwoI	GCNNNNNNNGC	1 cut(s)	97
NcoI	CCATGG	1 cut(s)	304
NdeII	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
NlaIII	CATG	7 cut(s)	133, 229, 278, 308, 355, 395, 501
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	2 cut(s)	278, 355
NspV	TTCGAA	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	179, 411, 451, 463
PkrI	GCNGC	8 cut(s)	176, 302, 342, 428, 540, 583, 628, 642
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	488
PspCI	CACGTG	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	290
PstI	CTGCAG	2 cut(s)	342, 514
PstNI	CAGNNNCTG	1 cut(s)	426
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	8 cut(s)	175, 301, 341, 427, 539, 582, 627, 641
Sau3AI	GATC	8 cut(s)	104, 111, 395, 435, 517, 528, 594, 645
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	3 cut(s)	393, 413, 433
SfcI	CTRYAG	2 cut(s)	338, 510
SfuI	TTCGAA	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	4 cut(s)	163, 361, 380, 555
SsiI	CCGC	3 cut(s)	70, 78, 538
SspMI	CTAG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	3 cut(s)	24, 118, 167
TaqII	GACCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	163, 361, 380, 555
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	4 cut(s)	179, 411, 451, 463
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	2 cut(s)	51, 655
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	7 cut(s)	174, 300, 340, 426, 581, 626, 640
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	4 cut(s)	403, 443, 455, 493
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	51, 655
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	278, 355
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.