Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Reverse (-)

11209569 .. 11210542

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAGGAACCGTAATGACAGACGGAAAGAGCAAAAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGTCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCAGATCACTGGTTTAGCCAAACAGGTAACCAATATCCGCCATGACTATCTGCACATAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

119

Amino Acids

12.64

Weight (kDa)

6.17

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	7 - 107	6.3e-41	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	354
AcvI	CACGTG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	75
AjnI	CCWGG	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	190, 233, 278, 292
ApoI	RAATTY	1 cut(s)	354
AsuHPI	GGTGA	3 cut(s)	266, 277, 296
BaeGI	GKGCMC	2 cut(s)	66, 96
BauI	CACGAG	1 cut(s)	126
BbrPI	CACGTG	1 cut(s)	140
BbvI	GCAGC	4 cut(s)	202, 245, 290, 304
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	90
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	4 cut(s)	191, 234, 279, 293
BlsI	GCNGC	4 cut(s)	192, 235, 280, 294
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	90
BpmI	CTGGAG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	307
BseSI	GKGCMC	2 cut(s)	66, 96
BseXI	GCAGC	4 cut(s)	202, 245, 290, 304
BsgI	GTGCAG	2 cut(s)	297, 329
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	66, 96
Bsp143I	GATC	4 cut(s)	169, 180, 246, 297
BspACI	CCGC	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	4 cut(s)	169, 180, 246, 297
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	319
BstKTI	GATC	4 cut(s)	172, 183, 249, 300
BstMBI	GATC	4 cut(s)	169, 180, 246, 297
BstNI	CCWGG	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	2 cut(s)	66, 96
BstV1I	GCAGC	4 cut(s)	202, 245, 290, 304
BstXI	CCANNNNNNTGG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	66
CviAII	CATG	2 cut(s)	150, 335
CviJI	RGCY	4 cut(s)	220, 259, 281, 311
CviKI_1	RGCY	4 cut(s)	220, 259, 281, 311
DpnI	GATC	4 cut(s)	171, 182, 248, 299
DpnII	GATC	4 cut(s)	169, 180, 246, 297
EciI	GGCGGA	1 cut(s)	320
Eco72I	CACGTG	1 cut(s)	140
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	153, 338
FaiI	YATR	4 cut(s)	49, 151, 336, 350
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	149, 334
Fnu4HI	GCNGC	4 cut(s)	191, 234, 279, 293
Fsp4HI	GCNGC	4 cut(s)	191, 234, 279, 293
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	4 cut(s)	191, 234, 279, 293
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	153, 338
HinfI	GANTC	1 cut(s)	85
HphI	GGTGA	3 cut(s)	266, 277, 296
Hpy188I	TCNGA	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	164, 203, 278, 292, 346
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	153, 338
Kzo9I	GATC	4 cut(s)	169, 180, 246, 297
LpnPI	CCDG	9 cut(s)	26, 75, 102, 174, 258, 267, 273, 288, 302
Lsp1109I	GCAGC	4 cut(s)	202, 245, 290, 304
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	112, 265, 319
MalI	GATC	4 cut(s)	171, 182, 248, 299
MboI	GATC	4 cut(s)	169, 180, 246, 297
MhlI	GDGCHC	2 cut(s)	66, 96
MluCI	AATT	2 cut(s)	207, 354
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	122, 232, 256
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	169, 180, 246, 297
NlaIII	CATG	2 cut(s)	153, 338
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	2 cut(s)	112, 265
PkrI	GCNGC	4 cut(s)	192, 235, 280, 294
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	88
PspCI	CACGTG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	4 cut(s)	191, 234, 279, 293
Sau3AI	GATC	4 cut(s)	169, 180, 246, 297
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	66, 96
SetI	ASST	7 cut(s)	133, 142, 179, 267, 277, 283, 321
SfcI	CTRYAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	207, 354
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	142
TasI	AATT	2 cut(s)	207, 354
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	2 cut(s)	112, 265
TseI	GCWGC	4 cut(s)	190, 233, 278, 292
Tsp45I	GTSAC	2 cut(s)	112, 265
TspDTI	ATGAA	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	354
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.