Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004576

Physical Location & Seq

Genomic Coordinates Forward (+)

36639074 .. 36640163

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAAAGATGCAGGCTGATTTATCATTTGCGGATGAAGCATGACCAAACGTTTCACAGTTTACCAAAAGAGCAGCACAGAGACAGAAAGAGCAAAAGTCTGGTAGCATACCATGAAGTTGGGCACGCCATCTGTGGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATTCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCAGATTGTTGCTATCAAATTCAAGCTGTTTCTGTTTGTTGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

133

Amino Acids

14.76

Weight (kDa)

9.64

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	28 - 123	5.8e-39	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36730
fragaria_vesca	FvH4_6g48480
malus_domestica	MD00G1130700.v1.1 MD09G1051700.v1.1
prunus_persica	Prupe.3G267000_v2.0.a1
pyrus_communis	pycom111g04300 pycom17g04660 pycom17g04690
rosa_chinensis	RchiOBHm_Chr2g0168371 RchiOBHm_Chr5g0064681 RchiOBHm_Chr5g0064691
rosa_laevigata	RLG00000004634 RLG00000011887 RLG00000021772 RLG00000024779 RLG00000034413
rosa_multiflora	Rmu_sc0000524.1_g000031 Rmu_sc0003354.1_g000021 Rmu_sc0039228.1_g000001 Rmu_ssc0000002.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113250
rosa_rugosa	Rorug02G0533700
rosa_samantha	Rh1AG067000 Rh2BG616000 Rh2CG583800 Rh2DG626100 Rh4BG210500 Rh5AG077100
rosa_wichuraiana	Rw5G007110 Rw5G029530 Rw6G007180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AclI	AACGTT	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	371
AcvI	CACGTG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	341, 379
AluI	AGCT	2 cut(s)	341, 379
Alw26I	GTCTC	1 cut(s)	75
ApeKI	GCWGC	5 cut(s)	73, 250, 293, 338, 352
ApoI	RAATTY	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	326, 337, 356
BaeGI	GKGCMC	2 cut(s)	126, 156
BauI	CACGAG	1 cut(s)	186
BbrPI	CACGTG	1 cut(s)	200
BbvI	GCAGC	5 cut(s)	85, 262, 305, 350, 364
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	179, 396
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	5 cut(s)	74, 251, 294, 339, 353
BlsI	GCNGC	5 cut(s)	75, 252, 295, 340, 354
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseSI	GKGCMC	2 cut(s)	126, 156
BseXI	GCAGC	5 cut(s)	85, 262, 305, 350, 364
BsgI	GTGCAG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	126, 156
Bsp143I	GATC	2 cut(s)	240, 306
BspACI	CCGC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	240, 306
BssSI	CACGAG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	14, 126
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	243, 309
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	240, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	126, 156
BstV1I	GCAGC	5 cut(s)	85, 262, 305, 350, 364
BstXI	CCANNNNNNTGG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	14, 126
CviAII	CATG	3 cut(s)	41, 113, 210
CviJI	RGCY	5 cut(s)	16, 280, 319, 341, 379
CviKI_1	RGCY	5 cut(s)	16, 280, 319, 341, 379
DpnI	GATC	2 cut(s)	242, 308
DpnII	GATC	2 cut(s)	240, 306
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	44, 116, 213
FaiI	YATR	4 cut(s)	42, 109, 114, 211
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	3 cut(s)	40, 112, 209
Fnu4HI	GCNGC	5 cut(s)	74, 251, 294, 339, 353
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	5 cut(s)	74, 251, 294, 339, 353
FspBI	CTAG	2 cut(s)	179, 396
GluI	GCNGC	5 cut(s)	74, 251, 294, 339, 353
GsuI	CTGGAG	1 cut(s)	132
Hin1II	CATG	3 cut(s)	44, 116, 213
HinfI	GANTC	2 cut(s)	145, 230
HphI	GGTGA	3 cut(s)	326, 337, 356
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	50, 199
HpyCH4V	TGCA	5 cut(s)	12, 224, 263, 338, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpySE526I	ACGT	2 cut(s)	50, 199
Hsp92II	CATG	3 cut(s)	44, 116, 213
Kzo9I	GATC	2 cut(s)	240, 306
LpnPI	CCDG	7 cut(s)	86, 135, 162, 234, 318, 327, 333
Lsp1109I	GCAGC	5 cut(s)	85, 262, 305, 350, 364
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	179, 396
MaeII	ACGT	2 cut(s)	50, 199
MaeIII	GTNAC	2 cut(s)	172, 325
MalI	GATC	2 cut(s)	242, 308
MboI	GATC	2 cut(s)	240, 306
MhlI	GDGCHC	2 cut(s)	126, 156
MluCI	AATT	2 cut(s)	267, 371
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	182, 292, 316
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	240, 306
NlaIII	CATG	3 cut(s)	44, 116, 213
NmuCI	GTSAC	2 cut(s)	172, 325
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	75, 252, 295, 340, 354
PleI	GAGTC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	341
SatI	GCNGC	5 cut(s)	74, 251, 294, 339, 353
Sau3AI	GATC	2 cut(s)	240, 306
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	126, 156
SetI	ASST	8 cut(s)	53, 193, 202, 239, 327, 337, 343, 381
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	267, 371
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	179, 396
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	53, 202
TasI	AATT	2 cut(s)	267, 371
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	172, 325
TseI	GCWGC	5 cut(s)	73, 250, 293, 338, 352
Tsp45I	GTSAC	2 cut(s)	172, 325
TspDTI	ATGAA	4 cut(s)	17, 50, 129, 205
XapI	RAATTY	1 cut(s)	371
XspI	CTAG	2 cut(s)	179, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.