AT2G37320

repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
15667139 .. 15668851
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37320.1

Sequence Viewer

Length: 1503 bp
ATGTCTTGTCTGAGAAATTATTATTGTCGAGCTTTCGGTTATAAACAGTCTCGATCTTGCTACAGTCGATCACTGAATCGTGAAATAGCTAACGAGTCATCTGAAGTTGAGAGACGAGCTCGTTCTCTGAGAGTTTTGGATATCATATCTTCGAAATCTGGTGGAGTTTCGAATCGTCAGGACCATTTTGGTTTCGTTCAGGAATTTCGACAAACAGATTCGTGGCGATTCAGAGGTCAGGCAATTTCCGAGGATTTTGATCTCTCAAGAACCAAAAATGGAGTTTCAAGCGTGCTCGAAGAAGTTATGCTGGAGGATTCTTCAAGCTCTGTCAAGCGAGATGGATGGAGTTTCGATGCTTATGGTTTATCATCCGCCGTGAGATCTTGTGGGTTGAATCGAGACTTTAGAACCGGTTCTGGGTTTCATTGTTTAGCGTTGAAAGGTGGGTTTATCTCAGATGTCTACTTAGGAAGTTCTCTGGTCGTTTTGTACAGAGATTCTGGTGAAGTAGAGAATGCATATAAAGTGTTTGAAGAAATGCCTGAGAGGAATGTGGTTTCATGGACGGCTATGATTTCAGGGTTTGCGCAAGAATGGCGAGTTGATATCTGCTTGAAGCTTTATTCAAAGATGAGAAAGTCAACCTCTGATCCGAATGATTACACATTCACGGCTCTCTTGAGCGCTTGCACGGGAAGCGGAGCCCTAGGGCAAGGAAGAAGTGTTCATTGTCAGACACTCCACATGGGATTGAAGTCGTATCTACATATCTCAAACTCTCTCATCTCGATGTACTGCAAATGCGGTGATTTGAAGGATGCTTTTCGTATCTTTGACCAGTTTTCAAACAAAGACGTTGTTTCTTGGAACTCTATGATTGCTGGTTACGCGCAGCACGGCCTTGCAATGCAAGCAATCGAGCTCTTTGAATTAATGATGCCTAAAAGCGGAACAAAGCCAGATGCAATCACATATCTAGGAGTTTTGTCATCGTGTAGACACGCAGGTCTTGTAAAAGAAGGAAGAAAGTTCTTCAATTTGATGGCGGAACACGGCCTGAAACCAGAACTCAACCATTACTCTTGTCTAGTCGATCTTCTCGGGAGATTTGGTCTGTTGCAAGAAGCCCTGGAACTGATCGAGAACATGCCAATGAAACCAAACTCAGTCATATGGGGATCTCTGCTATTCTCTTGCCGTGTTCACGGCGATGTCTGGACCGGAATCAGAGCTGCAGAGGAACGACTAATGCTTGAACCTGATTGCGCAGCCACGCATGTCCAGCTGGCAAATCTTTACGCCAGTGTAGGGTACTGGAAAGAAGCGGCGACAGTGAGGAAGCTGATGAAAGATAAAGGACTGAAGACGAATCCGGGTTGCAGTTGGATCGAGATCAATAACTATGTTTTCATGTTTAAAGCTGAAGATGGTAGCAACTGTAGAATGCTAGAGATTGTTCATGTTCTTCATTGTCTCATTGATCACATGGAGTTCCTCTAA

Protein Analysis

500

Amino Acids

56.34

Weight (kDa)

7.51

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 184 - 231 2.2e-12 PPR repeat family
PPR_1 PF12854 260 - 281 4.1e-06 PPR repeat
PPR_2 PF13041 285 - 333 8.1e-10 PPR repeat family
PPR PF01535 288 - 313 1.8e-06 PPR repeat
E_motif PF20431 405 - 465 5.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 1008
Acc16I TGCGCA 2 cut(s) 591, 1270
Acc36I ACCTGC 1 cut(s) 998
AccI GTMKAC 2 cut(s) 465, 1000
AccII CGCG 1 cut(s) 893
AciI CCGC 6 cut(s) 375, 702, 807, 951, 1049, 1328
AclWI GGATC 3 cut(s) 647, 1189, 1397
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 3 cut(s) 123, 1385, 1446
AfaI GTAC 3 cut(s) 494, 797, 1316
AfeI AGCGCT 1 cut(s) 688
AfiI CCNNNNNNNGG 3 cut(s) 420, 950, 1311
AgeI ACCGGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 1131
AloI GAACNNNNNNTCC 2 cut(s) 711, 743
Alw21I GWGCWC 3 cut(s) 121, 297, 927
Alw26I GTCTC 4 cut(s) 54, 106, 396, 1481
AlwI GGATC 3 cut(s) 647, 1189, 1397
Ama87I CYCGRG 1 cut(s) 1103
Aor51HI AGCGCT 1 cut(s) 688
AoxI GGCC 2 cut(s) 901, 1057
ApeKI GCWGC 3 cut(s) 895, 1235, 1271
ApoI RAATTY 1 cut(s) 203
AseI ATTAAT 1 cut(s) 935
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 415
AspA2I CCTAGG 1 cut(s) 709
AspLEI GCGC 4 cut(s) 592, 689, 895, 1271
AspS9I GGNCC 2 cut(s) 181, 1221
AsuC2I CCSGG 1 cut(s) 1377
AsuHPI GGTGA 2 cut(s) 518, 821
AsuII TTCGAA 2 cut(s) 152, 170
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 2 cut(s) 181, 1221
AvrII CCTAGG 1 cut(s) 709
BanII GRGCYC 3 cut(s) 121, 709, 927
BbsI GAAGAC 1 cut(s) 1373
Bbv12I GWGCWC 3 cut(s) 121, 297, 927
BbvI GCAGC 3 cut(s) 907, 1222, 1283
BccI CCATC 4 cut(s) 335, 339, 1039, 1424
BceAI ACGGC 7 cut(s) 362, 585, 690, 916, 1072, 1185, 1225
BcgI CGANNNNNNTGC 2 cut(s) 1372, 1406
BciT130I CCWGG 1 cut(s) 1133
BclI TGATCA 1 cut(s) 1483
BcnI CCSGG 1 cut(s) 1377
BcoDI GTCTC 4 cut(s) 54, 106, 396, 1481
BfaI CTAG 4 cut(s) 710, 980, 1091, 1451
BfmI CTRYAG 3 cut(s) 61, 1236, 1441
BfoI RGCGCY 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 998
BglII AGATCT 1 cut(s) 383
BisI GCNGC 4 cut(s) 896, 1236, 1272, 1329
BlnI CCTAGG 1 cut(s) 709
BlsI GCNGC 4 cut(s) 897, 1237, 1273, 1330
Bme1390I CCNGG 2 cut(s) 1133, 1377
Bme18I GGWCC 2 cut(s) 181, 1221
BmeT110I CYCGRG 1 cut(s) 1103
BmgT120I GGNCC 2 cut(s) 181, 1221
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 1133, 1377
BmsI GCATC 4 cut(s) 346, 811, 930, 955
BpiI GAAGAC 1 cut(s) 1373
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 332
Bpu14I TTCGAA 2 cut(s) 152, 170
BpuEI CTTGAG 2 cut(s) 250, 703
BpuMI CCSGG 1 cut(s) 1377
BsaBI GATNNNNATC 2 cut(s) 258, 1394
BsaJI CCNNGG 3 cut(s) 249, 709, 1131
BsaWI WCCGGW 2 cut(s) 413, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 1099, 1129
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 950, 1311
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 3 cut(s) 841, 1305, 1322
Bse3DI GCAATG 1 cut(s) 915
Bse8I GATNNNNATC 2 cut(s) 258, 1394
BseBI CCWGG 1 cut(s) 1133
BseDI CCNNGG 3 cut(s) 249, 709, 1131
BseGI GGATG 3 cut(s) 350, 371, 826
BseJI GATNNNNATC 2 cut(s) 258, 1394
BseLI CCNNNNNNNGG 3 cut(s) 420, 950, 1311
BseMI GCAATG 1 cut(s) 915
BseMII CTCAG 4 cut(s) 119, 471, 537, 1182
BseNI ACTGG 3 cut(s) 841, 1305, 1322
BseXI GCAGC 3 cut(s) 907, 1222, 1283
Bsh1236I CGCG 1 cut(s) 893
BshFI GGCC 2 cut(s) 903, 1059
BshTI ACCGGT 1 cut(s) 413
BsiHKAI GWGCWC 3 cut(s) 121, 297, 927
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 3 cut(s) 414, 1224, 1376
BslI CCNNNNNNNGG 3 cut(s) 420, 950, 1311
BsmAI GTCTC 4 cut(s) 54, 106, 396, 1481
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 2 cut(s) 523, 1452
BsnI GGCC 2 cut(s) 903, 1059
BsoBI CYCGRG 1 cut(s) 1103
Bsp119I TTCGAA 2 cut(s) 152, 170
Bsp1286I GDGCHC 4 cut(s) 121, 297, 709, 927
Bsp1407I TGTACA 1 cut(s) 492
BspACI CCGC 6 cut(s) 375, 702, 807, 951, 1049, 1328
BspANI GGCC 2 cut(s) 903, 1059
BspCNI CTCAG 4 cut(s) 120, 470, 538, 1181
BspFNI CGCG 1 cut(s) 893
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 1240
BspMI ACCTGC 1 cut(s) 998
BspPI GGATC 3 cut(s) 647, 1189, 1397
BspT104I TTCGAA 2 cut(s) 152, 170
BsrDI GCAATG 1 cut(s) 915
BsrFI RCCGGY 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 3 cut(s) 841, 1305, 1322
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 3 cut(s) 249, 709, 1131
BssT1I CCWWGG 1 cut(s) 709
Bst2UI CCWGG 1 cut(s) 1133
Bst4CI ACNGT 4 cut(s) 48, 65, 1336, 1442
BstAUI TGTACA 1 cut(s) 492
BstBI TTCGAA 2 cut(s) 152, 170
BstC8I GCNNGC 4 cut(s) 293, 691, 915, 1290
BstDEI CTNAG 6 cut(s) 11, 128, 457, 469, 546, 1168
BstF5I GGATG 3 cut(s) 350, 371, 826
BstFNI CGCG 1 cut(s) 893
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 4 cut(s) 592, 689, 895, 1271
BstMAI GTCTC 4 cut(s) 54, 106, 396, 1481
BstMWI GCNNNNNNNGC 5 cut(s) 598, 699, 890, 914, 1285
BstNI CCWGG 1 cut(s) 1133
BstNSI RCATGY 2 cut(s) 1153, 1283
BstSCI CCNGG 2 cut(s) 1131, 1375
BstSFI CTRYAG 3 cut(s) 61, 1236, 1441
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 3 cut(s) 907, 1222, 1283
BstV2I GAAGAC 1 cut(s) 1373
BstX2I RGATCY 2 cut(s) 383, 1181
BstYI RGATCY 2 cut(s) 383, 1181
BsuRI GGCC 2 cut(s) 903, 1059
BtgZI GCGATG 1 cut(s) 1227
BtsCI GGATG 3 cut(s) 350, 371, 826
BtsIMutI CAGTG 3 cut(s) 71, 1312, 1341
BveI ACCTGC 1 cut(s) 998
Cac8I GCNNGC 4 cut(s) 293, 691, 915, 1290
CfoI GCGC 4 cut(s) 592, 689, 895, 1271
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 181, 1221
Csp6I GTAC 3 cut(s) 493, 796, 1315
CspAI ACCGGT 1 cut(s) 413
CviAII CATG 7 cut(s) 564, 748, 1150, 1280, 1414, 1463, 1489
CviQI GTAC 3 cut(s) 493, 796, 1315
DdeI CTNAG 6 cut(s) 11, 128, 457, 469, 546, 1168
DraI TTTAAA 1 cut(s) 1420
DrdI GACNNNNNNGTC 1 cut(s) 1008
DseDI GACNNNNNNGTC 1 cut(s) 1008
EciI GGCGGA 2 cut(s) 364, 1064
Ecl136II GAGCTC 2 cut(s) 119, 925
Eco130I CCWWGG 1 cut(s) 709
Eco24I GRGCYC 3 cut(s) 121, 709, 927
Eco32I GATATC 2 cut(s) 142, 610
Eco47I GGWCC 2 cut(s) 181, 1221
Eco47III AGCGCT 1 cut(s) 688
Eco53kI GAGCTC 2 cut(s) 119, 925
Eco57I CTGAAG 3 cut(s) 123, 1385, 1446
Eco88I CYCGRG 1 cut(s) 1103
EcoICRI GAGCTC 2 cut(s) 119, 925
EcoRII CCWGG 1 cut(s) 1131
EcoRV GATATC 2 cut(s) 142, 610
EcoT14I CCWWGG 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 3 cut(s) 121, 709, 927
ErhI CCWWGG 1 cut(s) 709
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 7 cut(s) 567, 751, 1153, 1283, 1417, 1466, 1492
FatI CATG 7 cut(s) 563, 747, 1149, 1279, 1413, 1462, 1488
FauNDI CATATG 1 cut(s) 1175
FbaI TGATCA 1 cut(s) 1483
FblI GTMKAC 2 cut(s) 465, 1000
Fnu4HI GCNGC 4 cut(s) 896, 1236, 1272, 1329
FokI GGATG 3 cut(s) 357, 358, 833
FriOI GRGCYC 3 cut(s) 121, 709, 927
Fsp4HI GCNGC 4 cut(s) 896, 1236, 1272, 1329
FspBI CTAG 4 cut(s) 710, 980, 1091, 1451
FspI TGCGCA 2 cut(s) 591, 1270
GlaI GCGC 4 cut(s) 591, 688, 894, 1270
GluI GCNGC 4 cut(s) 896, 1236, 1272, 1329
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 2 cut(s) 903, 1059
HapII CCGG 3 cut(s) 414, 1224, 1376
HhaI GCGC 4 cut(s) 592, 689, 895, 1271
Hin1II CATG 7 cut(s) 567, 751, 1153, 1283, 1417, 1466, 1492
Hin6I GCGC 4 cut(s) 590, 687, 893, 1269
HinP1I GCGC 4 cut(s) 590, 687, 893, 1269
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 620
HpaII CCGG 3 cut(s) 414, 1224, 1376
HphI GGTGA 2 cut(s) 518, 821
Hpy166II GTNNAC 4 cut(s) 466, 645, 1001, 1207
Hpy8I GTNNAC 4 cut(s) 466, 645, 1001, 1207
HpyAV CCTTC 2 cut(s) 811, 1016
HpyCH4III ACNGT 4 cut(s) 48, 65, 1336, 1442
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 9 cut(s) 521, 693, 801, 908, 913, 968, 1123, 1238, 1383
HpyF10VI GCNNNNNNNGC 5 cut(s) 598, 699, 890, 914, 1285
HpyF3I CTNAG 6 cut(s) 11, 128, 457, 469, 546, 1168
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 7 cut(s) 567, 751, 1153, 1283, 1417, 1466, 1492
HspAI GCGC 4 cut(s) 590, 687, 893, 1269
Ksp22I TGATCA 1 cut(s) 1483
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 3 cut(s) 907, 1222, 1283
LweI GCATC 4 cut(s) 346, 811, 930, 955
MaeI CTAG 4 cut(s) 710, 980, 1091, 1451
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 1 cut(s) 887
MflI RGATCY 2 cut(s) 383, 1181
MhlI GDGCHC 4 cut(s) 121, 297, 709, 927
MluCI AATT 5 cut(s) 16, 203, 243, 932, 1039
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 1367
MnlI CCTC 7 cut(s) 227, 244, 307, 543, 658, 1234, 1332
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 2 cut(s) 935, 1419
MslI CAYNNNNRTG 3 cut(s) 791, 1154, 1212
MspA1I CMGCKG 1 cut(s) 1288
MspI CCGG 3 cut(s) 414, 1224, 1376
MspR9I CCNGG 2 cut(s) 1133, 1377
Mva1269I GAATGC 2 cut(s) 523, 1452
MvaI CCWGG 1 cut(s) 1133
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 5 cut(s) 598, 699, 890, 914, 1285
NciI CCSGG 1 cut(s) 1377
NdeI CATATG 1 cut(s) 1175
NlaIII CATG 7 cut(s) 567, 751, 1153, 1283, 1417, 1466, 1492
NlaIV GGNNCC 1 cut(s) 706
NsbI TGCGCA 2 cut(s) 591, 1270
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 2 cut(s) 1153, 1283
NspV TTCGAA 2 cut(s) 152, 170
PctI GAATGC 2 cut(s) 523, 1452
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 9 cut(s) 76, 172, 218, 228, 317, 397, 500, 1227, 1372
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 4 cut(s) 897, 1237, 1273, 1330
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 935
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 2 cut(s) 121, 927
Psp6I CCWGG 1 cut(s) 1131
PspGI CCWGG 1 cut(s) 1131
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 181, 1221
PstI CTGCAG 1 cut(s) 1240
PsuI RGATCY 2 cut(s) 383, 1181
PvuII CAGCTG 1 cut(s) 1288
RsaI GTAC 3 cut(s) 494, 797, 1316
RsaNI GTAC 3 cut(s) 493, 796, 1315
RseI CAYNNNNRTG 3 cut(s) 791, 1154, 1212
SacI GAGCTC 2 cut(s) 121, 927
SaqAI TTAA 2 cut(s) 935, 1419
SatI GCNGC 4 cut(s) 896, 1236, 1272, 1329
Sau96I GGNCC 2 cut(s) 181, 1221
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 1133, 1377
SduI GDGCHC 4 cut(s) 121, 297, 709, 927
SfaNI GCATC 4 cut(s) 346, 811, 930, 955
SfcI CTRYAG 3 cut(s) 61, 1236, 1441
SfuI TTCGAA 2 cut(s) 152, 170
SinI GGWCC 2 cut(s) 181, 1221
SmiMI CAYNNNNRTG 3 cut(s) 791, 1154, 1212
SmlI CTYRAG 2 cut(s) 265, 682
SmoI CTYRAG 2 cut(s) 265, 682
Sse9I AATT 5 cut(s) 16, 203, 243, 932, 1039
SsiI CCGC 6 cut(s) 375, 702, 807, 951, 1049, 1328
SspMI CTAG 4 cut(s) 710, 980, 1091, 1451
SstI GAGCTC 2 cut(s) 121, 927
StyD4I CCNGG 2 cut(s) 1131, 1375
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 4 cut(s) 48, 65, 1336, 1442
TaiI ACGT 1 cut(s) 861
TasI AATT 5 cut(s) 16, 203, 243, 932, 1039
TatI WGTACW 2 cut(s) 492, 795
TauI GCSGC 1 cut(s) 1331
TfiI GAWTC 9 cut(s) 76, 172, 218, 228, 317, 397, 500, 1227, 1372
Tru1I TTAA 2 cut(s) 935, 1419
Tru9I TTAA 2 cut(s) 935, 1419
TscAI CASTG 3 cut(s) 78, 1312, 1341
TseI GCWGC 3 cut(s) 895, 1235, 1271
TspDTI ATGAA 8 cut(s) 416, 552, 719, 1172, 1364, 1402, 1451, 1460
TspRI CASTG 3 cut(s) 78, 1312, 1341
VpaK11BI GGWCC 2 cut(s) 181, 1221
VspI ATTAAT 1 cut(s) 935
XapI RAATTY 1 cut(s) 203
XceI RCATGY 2 cut(s) 1153, 1283
XmaJI CCTAGG 1 cut(s) 709
XmiI GTMKAC 2 cut(s) 465, 1000
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 4 cut(s) 710, 980, 1091, 1451
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.