Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309729.1

Orthogroup ID

OG0002212

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 798

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 797 bp

atgggtttcgattcgtatgttcacattgctaatgctttgatgtctatgtactgcaaatgcggcgctgttaaggatgcgctttacatatttgaaagtctggatggcaaagacaatgtgtcttggaactccatgattgcagggtatgcccagcacggccttgtgctgcaggccattgatctttttgaagaaatgaagaatcgaggcgtgaaacccgacaccattactttactcggggtgctctcttcgtgtcgccacgcgggtcttgtgaaagaaggctggcattacttcaattcgatggtcgaagaacatggcattcagcctgaactagatcattattcgtgcattgtggatctccttggtcgggcaggtttattggacgaggctcgagattttattgaaaagatgcctattcgtcccaacgccgttatttggggctcgcttctttcttcttgtagggttcatgggggcgtctggattggcattgaggctgcagagagcaggctgttgatggagccagggtgtgcttctacccatgtgcaattggcaaacctgtacgctagtttgggttgttgggatgaagcagcaagagtaagaaaactgatgaaagacaagggaatcaagacaagtcctgggttcagctggattgagatcagtaacgaagttcacagatttagagcagaagacagttcaaaccccagaatgattcaaataattggagtcttggatagtttggcagaccacatggtccgcctcaaaacttcaggttgtgagcttcaaatgcaagaggaagaggatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

266

Amino Acids

29.62

Weight (kDa)

5.36

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37320
fragaria_vesca	FvH4_6g14840 FvH4_6g14850 FvH4_6g14860 FvH4_6g14860 FvH4_6g14860
malus_domestica	MD12G1130300.v1.1
prunus_persica	Prupe.6G245300_v2.0.a1 Prupe.6G245400_v2.0.a1 Prupe.6G245400_v2.0.a1
pyrus_communis	pycom12g12640
rosa_chinensis	RchiOBHm_Chr3g0468071
rosa_laevigata	RLG00000024452 RLG00000024453 RLG00000024454
rosa_multiflora	Rmu_co8076902.1_g000001 Rmu_co8076904.1_g000001 Rmu_co8172106.1_g000001 Rmu_co8309729.1_g000001 Rmu_sc0005326.1_g000004 Rmu_sc0012651.1_g000004 Rmu_sc0012651.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413080 Rroxscaffold_6G00413090 Rroxscaffold_6G00413100
rosa_rugosa	Rorug03G0092100 Rorug03G0092200 Rorug03G0092300
rosa_samantha	Rh3AG140600 Rh3AG140700 Rh3AG140800 Rh3BG161900 Rh3BG162000 Rh3BG162100 Rh3BG162200 Rh3CG161900 Rh3CG162000 Rh3DG162400 Rh3DG162500 Rh3DG162600
rosa_wichuraiana	Rw3G013280 Rw3G013290 Rw3G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	356
AccII	CGCG	1 cut(s)	257
AciI	CCGC	3 cut(s)	60, 257, 748
AclWI	GGATC	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	744
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	50, 554
AfiI	CCNNNNNNNGG	2 cut(s)	361, 429
AgsI	TTSAA	7 cut(s)	92, 185, 289, 398, 690, 707, 776
AhdI	GACNNNNNGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	514, 628
AluBI	AGCT	2 cut(s)	639, 772
AluI	AGCT	2 cut(s)	639, 772
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	357
Ama87I	CYCGRG	2 cut(s)	230, 384
AoxI	GGCC	2 cut(s)	154, 168
ApeKI	GCWGC	3 cut(s)	163, 488, 581
AspLEI	GCGC	2 cut(s)	65, 79
AspS9I	GGNCC	1 cut(s)	745
AvaI	CYCGRG	2 cut(s)	230, 384
AvaII	GGWCC	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	150, 475, 593
BccI	CCATC	3 cut(s)	95, 289, 502
BceAI	ACGGC	2 cut(s)	169, 407
BciT130I	CCWGG	2 cut(s)	516, 630
BfaI	CTAG	2 cut(s)	326, 558
BfmI	CTRYAG	2 cut(s)	164, 489
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	4 cut(s)	61, 164, 489, 582
BlsI	GCNGC	4 cut(s)	62, 165, 490, 583
Bme1390I	CCNGG	2 cut(s)	516, 630
Bme18I	GGWCC	1 cut(s)	745
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmeT110I	CYCGRG	2 cut(s)	230, 384
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	516, 630
BmsI	GCATC	3 cut(s)	64, 393, 784
BpiI	GAAGAC	1 cut(s)	687
BsaBI	GATNNNNATC	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	3 cut(s)	355, 515, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 429
Bse3DI	GCAATG	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	516, 630
BseDI	CCNNGG	3 cut(s)	355, 515, 629
BseGI	GGATG	3 cut(s)	79, 106, 580
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	2 cut(s)	361, 429
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	150, 475, 593
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	156, 170
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	230, 384
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	361, 429
BsmFI	GGGAC	1 cut(s)	399
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	156, 170
BsoBI	CYCGRG	2 cut(s)	230, 384
Bsp1286I	GDGCHC	2 cut(s)	240, 437
Bsp143I	GATC	4 cut(s)	175, 328, 349, 648
BspACI	CCGC	3 cut(s)	60, 257, 748
BspANI	GGCC	2 cut(s)	156, 170
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	2 cut(s)	168, 493
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	355, 515, 629
BssMI	GATC	4 cut(s)	175, 328, 349, 648
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	516, 630
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	2 cut(s)	247, 783
BstACI	GRCGYC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	4 cut(s)	168, 278, 437, 500
BstF5I	GGATG	3 cut(s)	79, 106, 580
BstFNI	CGCG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 79
BstKTI	GATC	4 cut(s)	178, 331, 352, 651
BstMBI	GATC	4 cut(s)	175, 328, 349, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 143, 778
BstNI	CCWGG	2 cut(s)	516, 630
BstSCI	CCNGG	2 cut(s)	514, 628
BstSFI	CTRYAG	2 cut(s)	164, 489
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	150, 475, 593
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	156, 170
BtsCI	GGATG	3 cut(s)	79, 106, 580
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	4 cut(s)	168, 278, 437, 500
CfoI	GCGC	2 cut(s)	65, 79
Cfr13I	GGNCC	1 cut(s)	745
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	49, 553
CviAII	CATG	5 cut(s)	130, 308, 461, 533, 742
CviQI	GTAC	2 cut(s)	49, 553
DpnI	GATC	4 cut(s)	177, 330, 351, 650
DpnII	GATC	4 cut(s)	175, 328, 349, 648
DrdI	GACNNNNNNGTC	1 cut(s)	743
DriI	GACNNNNNGTC	1 cut(s)	115
DseDI	GACNNNNNNGTC	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	247, 783
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EarI	CTCTTC	2 cut(s)	247, 783
EciI	GGCGGA	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	744
Eco88I	CYCGRG	2 cut(s)	230, 384
EcoRII	CCWGG	2 cut(s)	514, 628
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	5 cut(s)	133, 311, 464, 536, 745
FaiI	YATR	9 cut(s)	18, 47, 86, 131, 144, 309, 462, 534, 743
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	5 cut(s)	129, 307, 460, 532, 741
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	4 cut(s)	61, 164, 489, 582
FokI	GGATG	3 cut(s)	86, 113, 587
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	61, 164, 489, 582
FspBI	CTAG	2 cut(s)	326, 558
GlaI	GCGC	2 cut(s)	64, 78
GluI	GCNGC	4 cut(s)	61, 164, 489, 582
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	156, 170
HgaI	GACGC	1 cut(s)	457
HhaI	GCGC	2 cut(s)	65, 79
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	133, 311, 464, 536, 745
Hin6I	GCGC	2 cut(s)	63, 77
HinP1I	GCGC	2 cut(s)	63, 77
HinfI	GANTC	5 cut(s)	11, 196, 615, 703, 717
Hpy166II	GTNNAC	2 cut(s)	22, 664
Hpy188III	TCNNGA	4 cut(s)	98, 386, 472, 619
Hpy8I	GTNNAC	2 cut(s)	22, 664
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4V	TGCA	7 cut(s)	54, 137, 166, 342, 491, 538, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 143, 778
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	133, 311, 464, 536, 745
HspAI	GCGC	2 cut(s)	63, 77
Kzo9I	GATC	4 cut(s)	175, 328, 349, 648
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	3 cut(s)	150, 475, 593
LweI	GCATC	3 cut(s)	64, 393, 784
MaeI	CTAG	2 cut(s)	326, 558
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	4 cut(s)	177, 330, 351, 650
MboI	GATC	4 cut(s)	175, 328, 349, 648
MboII	GAAGA	6 cut(s)	197, 205, 234, 314, 438, 692
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	240, 437
MluCI	AATT	3 cut(s)	289, 539, 711
MlyI	GAGTC	1 cut(s)	726
MnlI	CCTC	6 cut(s)	194, 373, 478, 761, 778, 784
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	516, 630
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	2 cut(s)	516, 630
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	60, 143, 778
NdeII	GATC	4 cut(s)	175, 328, 349, 648
NlaIII	CATG	5 cut(s)	133, 311, 464, 536, 745
NlaIV	GGNNCC	1 cut(s)	513
PaeR7I	CTCGAG	1 cut(s)	384
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	11, 196, 615, 703
PkrI	GCNGC	4 cut(s)	62, 165, 490, 583
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	514, 628
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	514, 628
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	2 cut(s)	168, 493
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	639
RsaI	GTAC	2 cut(s)	50, 554
RsaNI	GTAC	2 cut(s)	49, 553
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	4 cut(s)	61, 164, 489, 582
Sau3AI	GATC	4 cut(s)	175, 328, 349, 648
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	2 cut(s)	516, 630
SduI	GDGCHC	2 cut(s)	240, 437
SetI	ASST	5 cut(s)	370, 552, 641, 766, 774
SfaNI	GCATC	3 cut(s)	64, 393, 784
SfcI	CTRYAG	2 cut(s)	164, 489
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	745
SlaI	CTCGAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	289, 539, 711
SsiI	CCGC	3 cut(s)	60, 257, 748
SspMI	CTAG	2 cut(s)	326, 558
StyD4I	CCNGG	2 cut(s)	514, 628
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	686
TaqI	TCGA	5 cut(s)	9, 199, 293, 300, 385
TasI	AATT	3 cut(s)	289, 539, 711
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	4 cut(s)	11, 196, 615, 703
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	3 cut(s)	163, 488, 581
TspDTI	ATGAA	4 cut(s)	206, 449, 591, 617
VpaK11BI	GGWCC	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	384
XspI	CTAG	2 cut(s)	326, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.